FvH4_4g26520

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27891455 .. 27894127
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26520.t1

Sequence Viewer

Length: 1098 bp
ATGTCACGCTACGACTTCAATGCTTCTGAAGTGGAACTGAAACCGAGAATGCAAAACGACGTCGCATACGCCACCGCCTCAGCTCGCATCGGAACCTCCGCTATGTCATCACCGCAGCCTCAGCCTTACGGCGGTGGTTACAATTACGGCGGTGCTTACTCCTCCTCGATCTTCGGTCCGAAACCGTCGCAGTCTTCTTCCGTCGGAGTCGGACTTTACGGCGTCCAATCAGACTCCGACACGTCGCAGGCCTACCGCAACAAACTCTACCAGTCTCTGCTGGTCCAGAACCGCCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGTCGCGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTCAACAAGCAACTCAATCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGCGGCGAGCCAGCCGAGGTCGCCGTTTGGGATCGTCAACGGGATTCGTGGCCTGTCGATTGACGGCAAGTCGTCGACTCACGAGGAAGAGGATTTGAGCGATTACAGTCCGACGAGTGACGTCATGGACAACGAAGAGGCCGAGAATGTTAATGTGGAGAGGATTGCGCTGCCGAAGAGCATATCGGTGAGGTCCAGCGGCTATGTGAAGCTTCCTCCGCTGAGCGCTGCTACCAAAGCCGCCGCTCGGACTCGAATCGCTGCCAGATCTCGAACCGCCAAACCAGTCAGTGCTTCACAAAAGGTGTATGTTCAAGGAGGGAAGAAAGAGGAGGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGACTGGTGACTGCCCCTACAAAGACCACTGCCAATATGCTCACGGCGTGAAGGAGCTGCGCCCGGTGATTCGCCACCCACGCTACAAAACTGAAGTTTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCACCGCTGCCATTTTCGCCATGCACTCACTGAGGAGGAGAAGCAGCTTGCTGGTGGCAACAATAAGCTCAACAGGCCAATCAGGTAA

Protein Analysis

366

Amino Acids

40.42

Weight (kDa)

8.81

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 282 - 307 4.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 63, 597
AccB1I GGYRCC 1 cut(s) 808
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 372
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 1009
AcuI CTGAAG 3 cut(s) 48, 347, 987
AcyI GRCGYC 3 cut(s) 60, 222, 594
AdeI CACNNNGTG 1 cut(s) 922
AfeI AGCGCT 1 cut(s) 700
AfiI CCNNNNNNNGG 5 cut(s) 131, 301, 340, 343, 720
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 6 cut(s) 19, 468, 788, 818, 832, 847
AhdI GACNNNNNGTC 1 cut(s) 541
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 2 cut(s) 294, 834
AluBI AGCT 8 cut(s) 83, 406, 461, 471, 685, 931, 1057, 1078
AluI AGCT 8 cut(s) 83, 406, 461, 471, 685, 931, 1057, 1078
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 279, 869
AlwI GGATC 1 cut(s) 512
AlwNI CAGNNNCTG 2 cut(s) 277, 321
Aor51HI AGCGCT 1 cut(s) 700
AoxI GGCC 5 cut(s) 249, 523, 612, 1009, 1085
ApeKI GCWGC 7 cut(s) 115, 643, 701, 734, 931, 1017, 1054
AspLEI GCGC 4 cut(s) 333, 643, 701, 936
AspS9I GGNCC 3 cut(s) 176, 283, 666
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 5 cut(s) 102, 673, 893, 952, 1004
AsuNHI GCTAGC 1 cut(s) 985
AvaII GGWCC 3 cut(s) 176, 283, 666
BalI TGGCCA 1 cut(s) 1011
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 2 cut(s) 338, 554
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 2 cut(s) 79, 120
BbvI GCAGC 7 cut(s) 127, 630, 688, 721, 918, 1004, 1066
BccI CCATC 2 cut(s) 295, 449
BceAI ACGGC 6 cut(s) 145, 163, 235, 481, 553, 934
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 296, 836
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 2 cut(s) 279, 869
BfaI CTAG 1 cut(s) 986
BfoI RGCGCY 2 cut(s) 334, 702
BglII AGATCT 1 cut(s) 740
BlpI GCTNAGC 1 cut(s) 695
Bme1390I CCNGG 3 cut(s) 296, 836, 938
Bme18I GGWCC 3 cut(s) 176, 283, 666
BmeRI GACNNNNNGTC 1 cut(s) 541
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 176, 283, 666
BmiI GGNNCC 2 cut(s) 94, 810
BmrFI CCNGG 3 cut(s) 296, 836, 938
BmsI GCATC 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 989
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 842
Bpu10I CCTNAGC 2 cut(s) 79, 120
Bpu1102I GCTNAGC 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 938
BsaHI GRCGYC 3 cut(s) 60, 222, 594
BsaJI CCNNGG 2 cut(s) 488, 835
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 301, 340, 343, 720
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 4 cut(s) 271, 758, 825, 883
BseBI CCWGG 2 cut(s) 296, 836
BseDI CCNNGG 2 cut(s) 488, 835
BseGI GGATG 2 cut(s) 429, 441
BseLI CCNNNNNNNGG 5 cut(s) 131, 301, 340, 343, 720
BseMII CTCAG 4 cut(s) 93, 134, 686, 1032
BseNI ACTGG 4 cut(s) 271, 758, 825, 883
BseRI GAGGAG 6 cut(s) 151, 154, 416, 818, 1058, 1061
BseXI GCAGC 7 cut(s) 127, 630, 688, 721, 918, 1004, 1066
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 5 cut(s) 251, 525, 614, 1011, 1087
BshNI GGYRCC 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 2 cut(s) 938, 990
BslI CCNNNNNNNGG 5 cut(s) 131, 301, 340, 343, 720
BsmAI GTCTC 2 cut(s) 279, 869
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 5 cut(s) 251, 525, 614, 1011, 1087
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 4 cut(s) 168, 453, 504, 740
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp68I TCGCGA 1 cut(s) 372
BspANI GGCC 5 cut(s) 251, 525, 614, 1011, 1087
BspCNI CTCAG 4 cut(s) 92, 133, 687, 1033
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 94, 810
BspOI GCTAGC 1 cut(s) 989
BspPI GGATC 1 cut(s) 512
BspQI GCTCTTC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 808
BsrBI CCGCTC 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 4 cut(s) 271, 758, 825, 883
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 2 cut(s) 488, 835
BssMI GATC 4 cut(s) 168, 453, 504, 740
BssNI GRCGYC 3 cut(s) 60, 222, 594
BssSI CACGAG 2 cut(s) 338, 554
Bst2BI CACGAG 2 cut(s) 338, 554
Bst2UI CCWGG 2 cut(s) 296, 836
Bst4CI ACNGT 2 cut(s) 186, 581
Bst6I CTCTTC 3 cut(s) 555, 603, 644
BstACI GRCGYC 3 cut(s) 60, 222, 594
BstC8I GCNNGC 6 cut(s) 85, 249, 481, 485, 987, 1059
BstDEI CTNAG 4 cut(s) 79, 120, 695, 1041
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 429, 441
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 2 cut(s) 334, 702
BstHHI GCGC 4 cut(s) 333, 643, 701, 936
BstKTI GATC 4 cut(s) 171, 456, 507, 743
BstMAI GTCTC 2 cut(s) 279, 869
BstMBI GATC 4 cut(s) 168, 453, 504, 740
BstNI CCWGG 2 cut(s) 296, 836
BstSCI CCNGG 3 cut(s) 294, 834, 936
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 7 cut(s) 127, 630, 688, 721, 918, 1004, 1066
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 740
BstYI RGATCY 1 cut(s) 740
BsuRI GGCC 5 cut(s) 251, 525, 614, 1011, 1087
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 429, 441
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 3 cut(s) 769, 901, 1038
BtuMI TCGCGA 1 cut(s) 372
Cac8I GCNNGC 6 cut(s) 85, 249, 481, 485, 987, 1059
CaiI CAGNNNCTG 2 cut(s) 277, 321
CfoI GCGC 4 cut(s) 333, 643, 701, 936
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 3 cut(s) 176, 283, 666
CpoI CGGWCCG 1 cut(s) 176
CseI GACGC 2 cut(s) 211, 368
CspI CGGWCCG 1 cut(s) 176
CviAII CATG 2 cut(s) 598, 1031
DdeI CTNAG 4 cut(s) 79, 120, 695, 1041
DpnI GATC 4 cut(s) 170, 455, 506, 742
DpnII GATC 4 cut(s) 168, 453, 504, 740
DraIII CACNNNGTG 1 cut(s) 922
DriI GACNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 3 cut(s) 555, 603, 644
Eam1105I GACNNNNNGTC 1 cut(s) 541
EarI CTCTTC 3 cut(s) 555, 603, 644
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 406
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 3 cut(s) 176, 283, 666
Eco47III AGCGCT 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 3 cut(s) 48, 347, 987
EcoICRI GAGCTC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 294, 834
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 2 cut(s) 601, 1034
FatI CATG 2 cut(s) 597, 1030
FauNDI CATATG 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 548
FokI GGATG 2 cut(s) 416, 428
FriOI GRGCYC 1 cut(s) 408
FspBI CTAG 1 cut(s) 986
GlaI GCGC 4 cut(s) 332, 642, 700, 935
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 2 cut(s) 334, 702
HaeIII GGCC 5 cut(s) 251, 525, 614, 1011, 1087
HapII CCGG 2 cut(s) 938, 990
HgaI GACGC 2 cut(s) 211, 368
HhaI GCGC 4 cut(s) 333, 643, 701, 936
Hin1I GRCGYC 3 cut(s) 60, 222, 594
Hin1II CATG 2 cut(s) 601, 1034
Hin6I GCGC 4 cut(s) 331, 641, 699, 934
HinP1I GCGC 4 cut(s) 331, 641, 699, 934
HincII GTYRAC 4 cut(s) 307, 397, 511, 549
HindII GTYRAC 4 cut(s) 307, 397, 511, 549
HindIII AAGCTT 2 cut(s) 459, 683
HinfI GANTC 7 cut(s) 207, 233, 517, 550, 724, 729, 943
HpaII CCGG 2 cut(s) 938, 990
HphI GGTGA 5 cut(s) 102, 673, 893, 952, 1004
Hpy166II GTNNAC 4 cut(s) 307, 397, 511, 549
Hpy188I TCNGA 9 cut(s) 28, 92, 180, 206, 212, 232, 238, 585, 723
Hpy188III TCNNGA 6 cut(s) 286, 371, 445, 554, 744, 847
Hpy8I GTNNAC 4 cut(s) 307, 397, 511, 549
HpyAV CCTTC 1 cut(s) 919
HpyCH4III ACNGT 2 cut(s) 186, 581
HpyCH4IV ACGT 5 cut(s) 60, 242, 393, 399, 594
HpyCH4V TGCA 4 cut(s) 52, 861, 975, 1034
HpyF3I CTNAG 4 cut(s) 79, 120, 695, 1041
HpySE526I ACGT 5 cut(s) 60, 242, 393, 399, 594
Hsp92I GRCGYC 3 cut(s) 60, 222, 594
Hsp92II CATG 2 cut(s) 601, 1034
HspAI GCGC 4 cut(s) 331, 641, 699, 934
Kzo9I GATC 4 cut(s) 168, 453, 504, 740
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 7 cut(s) 127, 630, 688, 721, 918, 1004, 1066
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 986
MaeII ACGT 5 cut(s) 60, 242, 393, 399, 594
MaeIII GTNAC 4 cut(s) 3, 137, 590, 881
MalI GATC 4 cut(s) 170, 455, 506, 742
MbiI CCGCTC 1 cut(s) 719
MboI GATC 4 cut(s) 168, 453, 504, 740
MboII GAAGA 8 cut(s) 163, 186, 189, 456, 572, 620, 661, 808
MflI RGATCY 1 cut(s) 740
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 1011
MluCI AATT 1 cut(s) 142
MluNI TGGCCA 1 cut(s) 1011
MlyI GAGTC 4 cut(s) 216, 227, 544, 718
MmeI TCCRAC 4 cut(s) 184, 190, 261, 608
Mox20I TGGCCA 1 cut(s) 1011
MscI TGGCCA 1 cut(s) 1011
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 1011
MspA1I CMGCKG 3 cut(s) 672, 694, 1017
MspI CCGG 2 cut(s) 938, 990
MspR9I CCNGG 3 cut(s) 296, 836, 938
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 2 cut(s) 296, 836
MvnI CGCG 1 cut(s) 372
NciI CCSGG 1 cut(s) 938
NdeI CATATG 1 cut(s) 1006
NdeII GATC 4 cut(s) 168, 453, 504, 740
NheI GCTAGC 1 cut(s) 985
NlaIII CATG 2 cut(s) 601, 1034
NlaIV GGNNCC 2 cut(s) 94, 810
NmeAIII GCCGAG 2 cut(s) 513, 640
NmuCI GTSAC 3 cut(s) 3, 590, 881
NruI TCGCGA 1 cut(s) 372
PceI AGGCCT 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 612
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 517, 729, 943
PflMI CCANNNNNTGG 1 cut(s) 301
PleI GAGTC 4 cut(s) 215, 227, 544, 718
PpsI GAGTC 4 cut(s) 215, 227, 544, 718
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 294, 834
PspGI CCWGG 2 cut(s) 294, 834
PspN4I GGNNCC 2 cut(s) 94, 810
PspPI GGNCC 3 cut(s) 176, 283, 666
PstNI CAGNNNCTG 2 cut(s) 277, 321
PsuI RGATCY 1 cut(s) 740
RruI TCGCGA 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 659
Rsr2I CGGWCCG 1 cut(s) 176
RsrII CGGWCCG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 408
SalI GTCGAC 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 1 cut(s) 624
Sau3AI GATC 4 cut(s) 168, 453, 504, 740
Sau96I GGNCC 3 cut(s) 176, 283, 666
SchI GAGTC 4 cut(s) 216, 227, 544, 718
ScrFI CCNGG 3 cut(s) 296, 836, 938
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 3 cut(s) 176, 283, 666
SmiMI CAYNNNNRTG 1 cut(s) 659
Sse9I AATT 1 cut(s) 142
SseBI AGGCCT 1 cut(s) 251
SspMI CTAG 1 cut(s) 986
SstI GAGCTC 1 cut(s) 408
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 294, 834, 936
TaaI ACNGT 2 cut(s) 186, 581
TaiI ACGT 5 cut(s) 63, 245, 396, 402, 597
TaqI TCGA 7 cut(s) 167, 402, 456, 530, 548, 727, 745
TaqII GACCGA 1 cut(s) 164
TasI AATT 1 cut(s) 142
TauI GCSGC 5 cut(s) 347, 479, 675, 716, 719
TfiI GAWTC 3 cut(s) 517, 729, 943
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 3 cut(s) 769, 908, 1045
TseFI GTSAC 3 cut(s) 3, 590, 881
TseI GCWGC 7 cut(s) 115, 643, 701, 734, 931, 1017, 1054
Tsp45I GTSAC 3 cut(s) 3, 590, 881
TspGWI ACGGA 2 cut(s) 190, 356
TspRI CASTG 3 cut(s) 769, 908, 1045
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 3 cut(s) 176, 283, 666
XagI CCTNNNNNAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 1 cut(s) 986
ZraI GACGTC 2 cut(s) 61, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.