Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1945868 .. 1947648

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCAACGAAGCTGGTCTGATAGTGAGGGCAGATCAGGCAAAACAAGGTTAAGCCCGAAACAACAACAGCGCAGATGCAAAACGACACCGCGTATGGCGGCCACGCCACATCTGCAATGCCGCAATCCCACACAGACGACGCCGTCTTCGCTTCACTCTACTCCGCCATTTTCGATCGCAAGGCTTCGACCAGTCAATACGACGTCGAATCGGACCACAGCTCGTCTTCAGCCCACCGCCACCGCCAACTCTACAATTCGCTCCTCGTTCAAGATCGATCAGGAGATGGTGAACCGCCACAGCCGTTGCCTCAAGCGCCTCCAAGAAACCTCCGAGGAAGCCGATGCTCTCCGCCGCGAGAACGTTCATCTCCGCTCTCTCAATCTCGAGCTCAACAAGCACCTCAGTCTGCTCATCCATGCCTCCGTGCAGAAACAATTCGGTTCCCCCTCCTCTGTTCAGACGACCGCGCCGTTTGGGATCGTTAACGGACTTCGCGACATGACAATTGATGACAAGCGAGCAGAGCAGGACATGTCCGACGAGAGCCCTATGAGTGTGATTGAGAGCGAAGGCGGCGATGCCGAGAATATTGATGTGGAGAGGTTTTCGCTGCCTAAGAGCATATCTGTGAGGTCTGATGGATACGTGAAGGCTGCTCCTCAAGCCGGTGCTAGCACTGCCGCTCGGACTCGGACCGCCTCTCGACCTCGCGCCGCCACTACATTCAATGCTTCGCAAAAGGTGTTCGTTCCGAGAGGGGTGAAAGAGGAGGAGCCACCGCTGGAATTGGAGGTGTACAACCAAGGCATGTTCAAGACAGAGCTGTGCAACAAGTGGCAGGAGGTTGGAGAGTGTCCTTACGGCGATCGATCACTGCCAGTTTGCACATGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

9.31

Isoelectric Point (pI)

69.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AatII	GACGTC	1 cut(s)	206
AccBSI	CCGCTC	2 cut(s)	375, 686
AccII	CGCG	5 cut(s)	91, 357, 470, 498, 714
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	140, 203
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	271, 730, 817
AluBI	AGCT	4 cut(s)	12, 221, 391, 826
AluI	AGCT	4 cut(s)	12, 221, 391, 826
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	613, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	4 cut(s)	72, 318, 472, 716
AspS9I	GGNCC	2 cut(s)	213, 696
AsuHPI	GGTGA	2 cut(s)	301, 775
AsuNHI	GCTAGC	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	213, 696
BanII	GRGCYC	2 cut(s)	393, 551
BbsI	GAAGAC	2 cut(s)	138, 218
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	600, 643
BccI	CCATC	2 cut(s)	280, 635
BceAI	ACGGC	4 cut(s)	127, 288, 457, 880
BciVI	GTATCC	1 cut(s)	638
BfaI	CTAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	638
BisI	GCNGC	8 cut(s)	99, 121, 355, 577, 614, 657, 684, 717
BlsI	GCNGC	8 cut(s)	100, 122, 356, 578, 615, 658, 685, 718
Bme18I	GGWCC	2 cut(s)	213, 696
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	213, 696
BmiI	GGNNCC	2 cut(s)	445, 777
BmsI	GCATC	3 cut(s)	65, 334, 571
BmtI	GCTAGC	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	138, 218
BpuEI	CTTGAG	2 cut(s)	296, 648
Bsa29I	ATCGAT	2 cut(s)	276, 871
BsaAI	YACGTR	1 cut(s)	649
BsaHI	GRCGYC	2 cut(s)	140, 203
BsaJI	CCNNGG	2 cut(s)	333, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	191, 881
Bse3DI	GCAATG	1 cut(s)	122
BseCI	ATCGAT	2 cut(s)	276, 871
BseDI	CCNNGG	2 cut(s)	333, 805
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	191, 881
BseRI	GAGGAG	5 cut(s)	253, 442, 651, 785, 788
BseXI	GCAGC	2 cut(s)	600, 643
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	5 cut(s)	91, 357, 470, 498, 714
Bsh1285I	CGRYCG	3 cut(s)	177, 468, 871
BshFI	GGCC	1 cut(s)	101
BshVI	ATCGAT	2 cut(s)	276, 871
BsiEI	CGRYCG	3 cut(s)	177, 468, 871
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	668
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	393, 551
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
Bsp68I	TCGCGA	1 cut(s)	498
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	417
BspDI	ATCGAT	2 cut(s)	276, 871
BspFNI	CGCG	5 cut(s)	91, 357, 470, 498, 714
BspLI	GGNNCC	2 cut(s)	445, 777
BspOI	GCTAGC	1 cut(s)	678
BspPI	GGATC	1 cut(s)	488
BsrBI	CCGCTC	2 cut(s)	375, 686
BsrDI	GCAATG	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	668
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	191, 881
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	333, 805
BssMI	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
BssNI	GRCGYC	2 cut(s)	140, 203
BssT1I	CCWWGG	1 cut(s)	805
BstACI	GRCGYC	2 cut(s)	140, 203
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	522, 676
BstDEI	CTNAG	2 cut(s)	404, 618
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	5 cut(s)	91, 357, 470, 498, 714
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	4 cut(s)	72, 318, 472, 716
BstKTI	GATC	7 cut(s)	35, 177, 276, 280, 483, 871, 875
BstMBI	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
BstMCI	CGRYCG	3 cut(s)	177, 468, 871
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 112, 148, 315, 397, 526, 576, 665, 680
BstNSI	RCATGY	2 cut(s)	538, 814
BstUI	CGCG	5 cut(s)	91, 357, 470, 498, 714
BstV1I	GCAGC	2 cut(s)	600, 643
BstV2I	GAAGAC	2 cut(s)	138, 218
Bsu15I	ATCGAT	2 cut(s)	276, 871
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	2 cut(s)	276, 871
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	2 cut(s)	678, 875
BtsIMutI	CAGTG	2 cut(s)	678, 875
BtuMI	TCGCGA	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	522, 676
CfoI	GCGC	4 cut(s)	72, 318, 472, 716
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	213, 696
ClaI	ATCGAT	2 cut(s)	276, 871
CpoI	CGGWCCG	1 cut(s)	696
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	799
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CspI	CGGWCCG	1 cut(s)	696
CviAII	CATG	5 cut(s)	419, 502, 535, 811, 891
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	2 cut(s)	404, 618
DpnI	GATC	7 cut(s)	34, 176, 275, 279, 482, 870, 874
DpnII	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	99
EciI	GGCGGA	2 cut(s)	153, 341
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	2 cut(s)	393, 551
Eco47I	GGWCC	2 cut(s)	213, 696
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	2 cut(s)	393, 551
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	5 cut(s)	422, 505, 538, 814, 894
FaiI	YATR	8 cut(s)	95, 420, 503, 536, 554, 626, 812, 892
FatI	CATG	5 cut(s)	418, 501, 534, 810, 890
Fnu4HI	GCNGC	8 cut(s)	99, 121, 355, 577, 614, 657, 684, 717
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	393, 551
Fsp4HI	GCNGC	8 cut(s)	99, 121, 355, 577, 614, 657, 684, 717
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	4 cut(s)	71, 317, 471, 715
GluI	GCNGC	8 cut(s)	99, 121, 355, 577, 614, 657, 684, 717
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	669
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	4 cut(s)	72, 318, 472, 716
Hin1I	GRCGYC	2 cut(s)	140, 203
Hin1II	CATG	5 cut(s)	422, 505, 538, 814, 894
Hin6I	GCGC	4 cut(s)	70, 316, 470, 714
HinP1I	GCGC	4 cut(s)	70, 316, 470, 714
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	2 cut(s)	208, 691
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	2 cut(s)	301, 775
Hpy166II	GTNNAC	3 cut(s)	292, 487, 799
Hpy188I	TCNGA	9 cut(s)	19, 213, 334, 462, 541, 640, 690, 696, 756
Hpy188III	TCNNGA	6 cut(s)	271, 281, 386, 497, 705, 817
Hpy8I	GTNNAC	3 cut(s)	292, 487, 799
Hpy99I	CGWCG	4 cut(s)	142, 205, 208, 545
HpyAV	CCTTC	2 cut(s)	566, 646
HpyCH4IV	ACGT	3 cut(s)	203, 363, 648
HpyCH4V	TGCA	6 cut(s)	4, 78, 115, 430, 831, 888
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 112, 148, 315, 397, 526, 576, 665, 680
HpyF3I	CTNAG	2 cut(s)	404, 618
HpySE526I	ACGT	3 cut(s)	203, 363, 648
Hsp92I	GRCGYC	2 cut(s)	140, 203
Hsp92II	CATG	5 cut(s)	422, 505, 538, 814, 894
HspAI	GCGC	4 cut(s)	70, 316, 470, 714
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
LmnI	GCTCC	3 cut(s)	266, 664, 775
LpnPI	CCDG	8 cut(s)	21, 204, 266, 515, 682, 770, 827, 894
Lsp1109I	GCAGC	2 cut(s)	600, 643
LweI	GCATC	3 cut(s)	65, 334, 571
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	3 cut(s)	203, 363, 648
MalI	GATC	7 cut(s)	34, 176, 275, 279, 482, 870, 874
MbiI	CCGCTC	2 cut(s)	375, 686
MboI	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
MboII	GAAGA	2 cut(s)	138, 218
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	393, 551
MluCI	AATT	4 cut(s)	255, 437, 507, 788
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	2 cut(s)	564, 829
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	50, 486
MslI	CAYNNNNRTG	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	1 cut(s)	669
MunI	CAATTG	1 cut(s)	507
MvnI	CGCG	5 cut(s)	91, 357, 470, 498, 714
MwoI	GCNNNNNNNGC	9 cut(s)	36, 112, 148, 315, 397, 526, 576, 665, 680
NdeII	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
NheI	GCTAGC	1 cut(s)	674
NlaIII	CATG	5 cut(s)	422, 505, 538, 814, 894
NlaIV	GGNNCC	2 cut(s)	445, 777
NmeAIII	GCCGAG	1 cut(s)	610
NruI	TCGCGA	1 cut(s)	498
NspI	RCATGY	2 cut(s)	538, 814
PaeR7I	CTCGAG	1 cut(s)	386
PciI	ACATGT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	470, 495
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	8 cut(s)	100, 122, 356, 578, 615, 658, 685, 718
Ple19I	CGATCG	2 cut(s)	177, 871
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
Ppu21I	YACGTR	1 cut(s)	649
PscI	ACATGT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	445, 777
PspPI	GGNCC	2 cut(s)	213, 696
PsyI	GACNNNGTC	1 cut(s)	142
PvuI	CGATCG	2 cut(s)	177, 871
RruI	TCGCGA	1 cut(s)	498
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	629
Rsr2I	CGGWCCG	1 cut(s)	696
RsrII	CGGWCCG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	50, 486
SatI	GCNGC	8 cut(s)	99, 121, 355, 577, 614, 657, 684, 717
Sau3AI	GATC	7 cut(s)	32, 174, 273, 277, 480, 868, 872
Sau96I	GGNCC	2 cut(s)	213, 696
SchI	GAGTC	1 cut(s)	685
SduI	GDGCHC	2 cut(s)	393, 551
SfaNI	GCATC	3 cut(s)	65, 334, 571
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	213, 696
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	3 cut(s)	311, 386, 663
SmoI	CTYRAG	3 cut(s)	311, 386, 663
Sse9I	AATT	4 cut(s)	255, 437, 507, 788
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	805
TaiI	ACGT	3 cut(s)	206, 366, 651
TaqI	TCGA	7 cut(s)	173, 187, 206, 276, 387, 706, 871
TasI	AATT	4 cut(s)	255, 437, 507, 788
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	6 cut(s)	101, 123, 357, 579, 686, 719
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	50, 486
Tru9I	TTAA	2 cut(s)	50, 486
TscAI	CASTG	2 cut(s)	685, 882
TseI	GCWGC	2 cut(s)	613, 656
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	415, 504
TspRI	CASTG	2 cut(s)	685, 882
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	213, 696
XceI	RCATGY	2 cut(s)	538, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	888
XhoI	CTCGAG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	675
ZraI	GACGTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.