Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

2584126 .. 2586347

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1035800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCCGCAATCCCACACAGACGACGCCGTCTTCGCTTCACTCTACTCCGCCATTTTTGATCGCAAGGCTTCGGTCAGTCAATACGACGTCGAATCGGACCACAGCTCGTCTTCAGCTCACCGCCACCGCCAACTCTACAATTCGCTCCTCGTTCAAGATCATCAGGAGATGGTGAACCGCCACAGCCGCTGCCTCAAGCGCCTCCAAGAAACCTCCGAGGAAGCCGACGCTCTCCGCCGCGAGAACGTTCATCTCCGCTCTCTCAATCTCGAGCTCAACAAGCACCTCAGTCTGCTCGTCCACGCCTCCGTGCAGAAACAATTCGGTTCCCCCTCCTCTGTTCAGACGACCGCGCCGTTTGGGATCGTTAACGGACTTCGTGACATGAAAATTGATGACAAGCGAGCAGAGCAGGACATGTCCGACGAGAGCCCTATGAGTGTGATTGAGAGCGAAGGCGGTGACGCGGAGAATATTGATGTGGAGAGGTTTTCGCTGCCTAAGAGCATATCTGTGAGGTCTGATGGATACGTGAAGGCTGCTCAGGCCGCTCAAGCCGGTGCTAGCACTGCCTCTCGGACTCGGACCACCTCTCGACCTCGTGCCGCCACTACATTCAATGCTTCGCAAAAGGTGTTTGTTCCGAGAGGGGTGAAAGAGGAGGAGGCGCCGCTGGAATTGGAGGTGTACAACCAAGGCATGTACAAGACAGAGCTGTGCAACAAGTGGCAGGAGGTTGGAGAGTGTCCTTACGGCGATCACTGCCAGTTTGCACATGGGATTGAGGAGCTCCGCCCTGTGATCCGCCACCCACGCTACAAGACCGAGGTCTGTAGGATGGTGCTTTCCGGCGTTGTCTGCCCATACGGTCACCGCTGCCATTTCCGCCACGCCCTCACCGAGAATGAAAAGCTGATGGTTCCAAACAAGCCCAGGCAAAGGCAGTTCAATCTGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

321

Amino Acids

36.28

Weight (kDa)

6.95

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	235 - 260	1.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	240 - 259	4.3e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	667
AccBSI	CCGCTC	2 cut(s)	258, 551
AccII	CGCG	3 cut(s)	240, 353, 467
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	2 cut(s)	371, 796
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	3 cut(s)	24, 87, 668
AfaI	GTAC	2 cut(s)	689, 704
AfiI	CCNNNNNNNGG	1 cut(s)	939
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	155, 619, 949
AjnI	CCWGG	1 cut(s)	932
AluBI	AGCT	6 cut(s)	105, 116, 274, 715, 790, 913
AluI	AGCT	6 cut(s)	105, 116, 274, 715, 790, 913
Alw21I	GWGCWC	2 cut(s)	276, 792
AlwI	GGATC	2 cut(s)	371, 796
AlwNI	CAGNNNCTG	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	4 cut(s)	189, 496, 539, 876
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	201, 355, 670
AspS9I	GGNCC	2 cut(s)	97, 585
AsuHPI	GGTGA	6 cut(s)	110, 184, 473, 664, 863, 889
AsuNHI	GCTAGC	1 cut(s)	563
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	97, 585
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	3 cut(s)	276, 434, 792
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	22, 102
Bbv12I	GWGCWC	2 cut(s)	276, 792
BbvI	GCAGC	4 cut(s)	176, 483, 526, 863
BccI	CCATC	4 cut(s)	163, 518, 832, 910
BceAI	ACGGC	3 cut(s)	11, 340, 769
BciT130I	CCWGG	1 cut(s)	934
BciVI	GTATCC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	2 cut(s)	202, 671
BfuI	GTATCC	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	934
Bme18I	GGWCC	2 cut(s)	97, 585
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	97, 585
BmiI	GGNNCC	3 cut(s)	328, 669, 921
BmrFI	CCNGG	1 cut(s)	934
BmtI	GCTAGC	1 cut(s)	567
BoxI	GACNNNNGTC	1 cut(s)	827
BpiI	GAAGAC	2 cut(s)	22, 102
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	2 cut(s)	179, 537
BsaAI	YACGTR	1 cut(s)	532
BsaHI	GRCGYC	3 cut(s)	24, 87, 668
BsaJI	CCNNGG	4 cut(s)	216, 694, 825, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	939
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	934
BseDI	CCNNGG	4 cut(s)	216, 694, 825, 932
BseGI	GGATG	1 cut(s)	843
BseLI	CCNNNNNNNGG	1 cut(s)	939
BseMII	CTCAG	2 cut(s)	301, 557
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	5 cut(s)	137, 325, 674, 677, 800
BseXI	GCAGC	4 cut(s)	176, 483, 526, 863
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	3 cut(s)	240, 353, 467
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	667
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	276, 792
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	558, 849
BslI	CCNNNNNNNGG	1 cut(s)	939
BsnI	GGCC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	276, 434, 792
Bsp1407I	TGTACA	2 cut(s)	687, 702
Bsp143I	GATC	5 cut(s)	58, 157, 363, 757, 801
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	300, 556
BspFNI	CGCG	3 cut(s)	240, 353, 467
BspLI	GGNNCC	3 cut(s)	328, 669, 921
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	371, 796
BspT107I	GGYRCC	1 cut(s)	667
BsrBI	CCGCTC	2 cut(s)	258, 551
BsrFI	RCCGGY	1 cut(s)	557
BsrGI	TGTACA	2 cut(s)	687, 702
BsrI	ACTGG	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	4 cut(s)	216, 694, 825, 932
BssMI	GATC	5 cut(s)	58, 157, 363, 757, 801
BssNI	GRCGYC	3 cut(s)	24, 87, 668
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	694
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	934
Bst4CI	ACNGT	1 cut(s)	869
BstACI	GRCGYC	3 cut(s)	24, 87, 668
BstAUI	TGTACA	2 cut(s)	687, 702
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	405, 565
BstDEI	CTNAG	3 cut(s)	287, 501, 543
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	1 cut(s)	843
BstFNI	CGCG	3 cut(s)	240, 353, 467
BstH2I	RGCGCY	2 cut(s)	202, 671
BstHHI	GCGC	3 cut(s)	201, 355, 670
BstKTI	GATC	5 cut(s)	61, 160, 366, 760, 804
BstMBI	GATC	5 cut(s)	58, 157, 363, 757, 801
BstMCI	CGRYCG	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	934
BstNSI	RCATGY	2 cut(s)	421, 703
BstPAI	GACNNNNGTC	1 cut(s)	827
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	1 cut(s)	932
BstSFI	CTRYAG	1 cut(s)	832
BstUI	CGCG	3 cut(s)	240, 353, 467
BstV1I	GCAGC	4 cut(s)	176, 483, 526, 863
BstV2I	GAAGAC	2 cut(s)	22, 102
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	2 cut(s)	567, 760
BtsIMutI	CAGTG	2 cut(s)	567, 760
Cac8I	GCNNGC	2 cut(s)	405, 565
CaiI	CAGNNNCTG	1 cut(s)	189
CfoI	GCGC	3 cut(s)	201, 355, 670
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	97, 585
CseI	GACGC	3 cut(s)	32, 236, 473
Csp6I	GTAC	2 cut(s)	688, 703
CviAII	CATG	4 cut(s)	385, 418, 700, 776
CviQI	GTAC	2 cut(s)	688, 703
DdeI	CTNAG	3 cut(s)	287, 501, 543
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	5 cut(s)	60, 159, 365, 759, 803
DpnII	GATC	5 cut(s)	58, 157, 363, 757, 801
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EciI	GGCGGA	5 cut(s)	37, 224, 782, 794, 875
Ecl136II	GAGCTC	2 cut(s)	274, 790
Eco130I	CCWWGG	1 cut(s)	694
Eco24I	GRGCYC	3 cut(s)	276, 434, 792
Eco47I	GGWCC	2 cut(s)	97, 585
Eco53kI	GAGCTC	2 cut(s)	274, 790
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	869
EcoICRI	GAGCTC	2 cut(s)	274, 790
EcoO65I	GGTNACC	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	932
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	3 cut(s)	276, 434, 792
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	4 cut(s)	388, 421, 703, 779
FaiI	YATR	7 cut(s)	386, 419, 437, 509, 701, 777, 865
FatI	CATG	4 cut(s)	384, 417, 699, 775
FokI	GGATG	1 cut(s)	850
FriOI	GRGCYC	3 cut(s)	276, 434, 792
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	3 cut(s)	200, 354, 669
HaeII	RGCGCY	2 cut(s)	202, 671
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	558, 849
HgaI	GACGC	3 cut(s)	32, 236, 473
HhaI	GCGC	3 cut(s)	201, 355, 670
Hin1I	GRCGYC	3 cut(s)	24, 87, 668
Hin1II	CATG	4 cut(s)	388, 421, 703, 779
Hin6I	GCGC	3 cut(s)	199, 353, 668
HinP1I	GCGC	3 cut(s)	199, 353, 668
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	92, 580
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	558, 849
HphI	GGTGA	6 cut(s)	110, 184, 473, 664, 863, 889
Hpy166II	GTNNAC	4 cut(s)	175, 301, 370, 688
Hpy188I	TCNGA	8 cut(s)	97, 217, 345, 424, 523, 579, 585, 645
Hpy188III	TCNNGA	6 cut(s)	155, 164, 269, 380, 594, 953
Hpy8I	GTNNAC	4 cut(s)	175, 301, 370, 688
Hpy99I	CGWCG	5 cut(s)	26, 89, 92, 230, 428
HpyAV	CCTTC	2 cut(s)	449, 529
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	3 cut(s)	87, 246, 531
HpyCH4V	TGCA	3 cut(s)	313, 720, 773
HpyF3I	CTNAG	3 cut(s)	287, 501, 543
HpySE526I	ACGT	3 cut(s)	87, 246, 531
Hsp92I	GRCGYC	3 cut(s)	24, 87, 668
Hsp92II	CATG	4 cut(s)	388, 421, 703, 779
HspAI	GCGC	3 cut(s)	199, 353, 668
KasI	GGCGCC	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	58, 157, 363, 757, 801
LmnI	GCTCC	3 cut(s)	150, 787, 795
Lsp1109I	GCAGC	4 cut(s)	176, 483, 526, 863
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	3 cut(s)	87, 246, 531
MaeIII	GTNAC	3 cut(s)	380, 461, 869
MalI	GATC	5 cut(s)	60, 159, 365, 759, 803
MbiI	CCGCTC	2 cut(s)	258, 551
MboI	GATC	5 cut(s)	58, 157, 363, 757, 801
MboII	GAAGA	2 cut(s)	22, 102
MhlI	GDGCHC	3 cut(s)	276, 434, 792
MluCI	AATT	4 cut(s)	139, 320, 390, 677
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	2 cut(s)	447, 718
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	3 cut(s)	189, 673, 876
MspI	CCGG	2 cut(s)	558, 849
MspR9I	CCNGG	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	934
MvnI	CGCG	3 cut(s)	240, 353, 467
NarI	GGCGCC	1 cut(s)	668
NdeII	GATC	5 cut(s)	58, 157, 363, 757, 801
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	4 cut(s)	388, 421, 703, 779
NlaIV	GGNNCC	3 cut(s)	328, 669, 921
NmuCI	GTSAC	3 cut(s)	380, 461, 869
NspI	RCATGY	2 cut(s)	421, 703
PaeR7I	CTCGAG	1 cut(s)	269
PciI	ACATGT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	2 cut(s)	353, 897
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	574
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	532
PscI	ACATGT	1 cut(s)	417
PshAI	GACNNNNGTC	1 cut(s)	827
Psp124BI	GAGCTC	2 cut(s)	276, 792
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	932
PspEI	GGTNACC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	932
PspN4I	GGNNCC	3 cut(s)	328, 669, 921
PspPI	GGNCC	2 cut(s)	97, 585
PstNI	CAGNNNCTG	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	689, 704
RsaNI	GTAC	2 cut(s)	688, 703
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	2 cut(s)	276, 792
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	5 cut(s)	58, 157, 363, 757, 801
Sau96I	GGNCC	2 cut(s)	97, 585
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	934
SduI	GDGCHC	3 cut(s)	276, 434, 792
SfcI	CTRYAG	1 cut(s)	832
SfoI	GGCGCC	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	97, 585
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	3 cut(s)	194, 269, 552
SmoI	CTYRAG	3 cut(s)	194, 269, 552
Sse9I	AATT	4 cut(s)	139, 320, 390, 677
SspDI	GGCGCC	1 cut(s)	667
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	2 cut(s)	276, 792
StyD4I	CCNGG	1 cut(s)	932
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	3 cut(s)	90, 249, 534
TaqI	TCGA	3 cut(s)	90, 270, 595
TaqII	GACCGA	2 cut(s)	61, 839
TasI	AATT	4 cut(s)	139, 320, 390, 677
TatI	WGTACW	2 cut(s)	687, 702
TauI	GCSGC	6 cut(s)	7, 189, 240, 551, 608, 673
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	574, 767
TseFI	GTSAC	3 cut(s)	380, 461, 869
TseI	GCWGC	4 cut(s)	189, 496, 539, 876
Tsp45I	GTSAC	3 cut(s)	380, 461, 869
TspDTI	ATGAA	3 cut(s)	239, 401, 921
TspGWI	ACGGA	2 cut(s)	298, 387
TspRI	CASTG	2 cut(s)	574, 767
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	97, 585
XceI	RCATGY	2 cut(s)	421, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	773
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	564
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.