Rh4DG333200

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
55602986 .. 55609250
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG333200.1

Sequence Viewer

Length: 1053 bp
ATGTCACGTTACGACTTCAGTGCTTCTGGAGTGAAACTGAAACCGAGAATGCAAAACGACGTCGCCTACTCCACCGCCTCAGCTCGCATCGGAACCTCCGCAATGTCATCATCGCAGCCTCAACCGTACGGCGGTGTTTACAGCTCCGTTTACTCCTCCTCGATCTTCGGTCCAAAGCCTTCTTCCGTCGCACCTTACGGCGTCCAATCAAACTCCGACACGTCGCAGGCCTACCGCAACAAACTCTACCAGTCTCTGCTGGTCCAAAACCGGCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACGGCAAGTCGTCGGCTCAAGAGGAAGAGGAATTGAGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACCAACGCCGCCTCTCGGATTCAGACAGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCACAAAAGGTGTACGTTCAGGGAGGGAAGAAAGAGGAAGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGTGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Protein Analysis

350

Amino Acids

38.75

Weight (kDa)

8.72

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 267 - 292 9.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccII CGCG 3 cut(s) 492, 910, 989
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 2 cut(s) 690, 964
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 326
AcyI GRCGYC 2 cut(s) 60, 201
AdeI CACNNNGTG 1 cut(s) 877
AfaI GTAC 2 cut(s) 128, 737
AfiI CCNNNNNNNGG 4 cut(s) 131, 319, 322, 675
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 447, 773, 787, 802
AhdI GACNNNNNGTC 1 cut(s) 511
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 8 cut(s) 83, 144, 385, 440, 450, 640, 886, 1012
AluI AGCT 8 cut(s) 83, 144, 385, 440, 450, 640, 886, 1012
Alw26I GTCTC 2 cut(s) 258, 407
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 2 cut(s) 256, 300
AoxI GGCC 6 cut(s) 228, 493, 567, 690, 964, 1040
ApeKI GCWGC 5 cut(s) 115, 598, 656, 886, 972
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 4 cut(s) 312, 891, 912, 991
AspS9I GGNCC 3 cut(s) 170, 262, 621
AsuC2I CCSGG 1 cut(s) 893
AsuHPI GGTGA 5 cut(s) 628, 661, 848, 907, 959
AsuNHI GCTAGC 1 cut(s) 940
AvaII GGWCC 3 cut(s) 170, 262, 621
BalI TGGCCA 1 cut(s) 966
BauI CACGAG 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 127, 585, 643, 873, 959
BccI CCATC 3 cut(s) 274, 428, 975
BceAI ACGGC 6 cut(s) 145, 214, 333, 451, 523, 643
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 2 cut(s) 258, 407
BfaI CTAG 1 cut(s) 941
BfmI CTRYAG 1 cut(s) 928
BfoI RGCGCY 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 695
BisI GCNGC 9 cut(s) 116, 324, 493, 599, 657, 669, 690, 887, 973
BlsI GCNGC 9 cut(s) 117, 325, 494, 600, 658, 670, 691, 888, 974
Bme1390I CCNGG 2 cut(s) 791, 893
Bme18I GGWCC 3 cut(s) 170, 262, 621
BmeRI GACNNNNNGTC 1 cut(s) 511
BmgBI CACGTC 1 cut(s) 222
BmgT120I GGNCC 3 cut(s) 170, 262, 621
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 791, 893
BmsI GCATC 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 944
BoxI GACNNNNGTC 1 cut(s) 923
BpmI CTGGAG 2 cut(s) 48, 797
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 634
BsaHI GRCGYC 2 cut(s) 60, 201
BsaJI CCNNGG 3 cut(s) 708, 790, 921
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 319, 322, 675
Bse118I RCCGGY 2 cut(s) 270, 944
Bse1I ACTGG 2 cut(s) 250, 780
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 3 cut(s) 708, 790, 921
BseGI GGATG 2 cut(s) 408, 420
BseLI CCNNNNNNNGG 4 cut(s) 131, 319, 322, 675
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 93, 412, 987
BseNI ACTGG 2 cut(s) 250, 780
BseRI GAGGAG 6 cut(s) 145, 148, 395, 896, 1013, 1016
BseXI GCAGC 5 cut(s) 127, 585, 643, 873, 959
BseYI CCCAGC 1 cut(s) 1034
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 3 cut(s) 492, 910, 989
BshFI GGCC 6 cut(s) 230, 495, 569, 692, 966, 1042
BsiSI CCGG 4 cut(s) 271, 647, 893, 945
BsiWI CGTACG 1 cut(s) 126
BslI CCNNNNNNNGG 4 cut(s) 131, 319, 322, 675
BsmAI GTCTC 2 cut(s) 258, 407
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 6 cut(s) 230, 495, 569, 692, 966, 1042
Bsp143I GATC 5 cut(s) 162, 432, 474, 544, 695
BspANI GGCC 6 cut(s) 230, 495, 569, 692, 966, 1042
BspCNI CTCAG 3 cut(s) 92, 411, 988
BspFNI CGCG 3 cut(s) 492, 910, 989
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 932
BspOI GCTAGC 1 cut(s) 944
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 108
BsrFI RCCGGY 2 cut(s) 270, 944
BsrI ACTGG 2 cut(s) 250, 780
BssAI RCCGGY 2 cut(s) 270, 944
BssECI CCNNGG 3 cut(s) 708, 790, 921
BssMI GATC 5 cut(s) 162, 432, 474, 544, 695
BssNI GRCGYC 2 cut(s) 60, 201
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 2 cut(s) 126, 875
Bst6I CTCTTC 3 cut(s) 525, 558, 599
BstACI GRCGYC 2 cut(s) 60, 201
BstAPI GCANNNNNTGC 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 5 cut(s) 85, 228, 942, 1014, 1040
BstDEI CTNAG 3 cut(s) 79, 398, 996
BstEII GGTNACC 1 cut(s) 649
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 408, 420
BstFNI CGCG 3 cut(s) 492, 910, 989
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 4 cut(s) 312, 891, 912, 991
BstKTI GATC 5 cut(s) 165, 435, 477, 547, 698
BstMAI GTCTC 2 cut(s) 258, 407
BstMBI GATC 5 cut(s) 162, 432, 474, 544, 695
BstNI CCWGG 1 cut(s) 791
BstPAI GACNNNNGTC 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 2 cut(s) 789, 891
BstSFI CTRYAG 1 cut(s) 928
BstUI CGCG 3 cut(s) 492, 910, 989
BstV1I GCAGC 5 cut(s) 127, 585, 643, 873, 959
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
BsuRI GGCC 6 cut(s) 230, 495, 569, 692, 966, 1042
BtgZI GCGATG 2 cut(s) 96, 953
BtrI CACGTC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 408, 420
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 4 cut(s) 25, 724, 856, 993
Cac8I GCNNGC 5 cut(s) 85, 228, 942, 1014, 1040
CaiI CAGNNNCTG 2 cut(s) 256, 300
CfoI GCGC 4 cut(s) 312, 891, 912, 991
Cfr10I RCCGGY 2 cut(s) 270, 944
Cfr13I GGNCC 3 cut(s) 170, 262, 621
CseI GACGC 2 cut(s) 190, 347
Csp6I GTAC 2 cut(s) 127, 736
CviQI GTAC 2 cut(s) 127, 736
DdeI CTNAG 3 cut(s) 79, 398, 996
DpnI GATC 5 cut(s) 164, 434, 476, 546, 697
DpnII GATC 5 cut(s) 162, 432, 474, 544, 695
DraIII CACNNNGTG 1 cut(s) 877
DriI GACNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 690, 964
Eam1104I CTCTTC 3 cut(s) 525, 558, 599
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 3 cut(s) 525, 558, 599
EciI GGCGGA 2 cut(s) 335, 341
Eco130I CCWWGG 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 3 cut(s) 170, 262, 621
Eco57I CTGAAG 1 cut(s) 326
Eco91I GGTNACC 1 cut(s) 649
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 649
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaiI YATR 3 cut(s) 611, 961, 963
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FauI CCCGC 1 cut(s) 915
FauNDI CATATG 1 cut(s) 961
Fnu4HI GCNGC 9 cut(s) 116, 324, 493, 599, 657, 669, 690, 887, 973
FokI GGATG 2 cut(s) 395, 407
Fsp4HI GCNGC 9 cut(s) 116, 324, 493, 599, 657, 669, 690, 887, 973
FspBI CTAG 1 cut(s) 941
GlaI GCGC 4 cut(s) 311, 890, 911, 990
GluI GCNGC 9 cut(s) 116, 324, 493, 599, 657, 669, 690, 887, 973
GsaI CCCAGC 1 cut(s) 1038
GsuI CTGGAG 2 cut(s) 48, 797
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 6 cut(s) 230, 495, 569, 692, 966, 1042
HapII CCGG 4 cut(s) 271, 647, 893, 945
HgaI GACGC 2 cut(s) 190, 347
HhaI GCGC 4 cut(s) 312, 891, 912, 991
Hin1I GRCGYC 2 cut(s) 60, 201
Hin6I GCGC 4 cut(s) 310, 889, 910, 989
HinP1I GCGC 4 cut(s) 310, 889, 910, 989
HincII GTYRAC 3 cut(s) 286, 376, 481
HindII GTYRAC 3 cut(s) 286, 376, 481
HindIII AAGCTT 2 cut(s) 438, 638
HinfI GANTC 5 cut(s) 550, 679, 702, 830, 898
HpaII CCGG 4 cut(s) 271, 647, 893, 945
HphI GGTGA 5 cut(s) 628, 661, 848, 907, 959
Hpy166II GTNNAC 6 cut(s) 139, 151, 286, 376, 481, 736
Hpy188I TCNGA 6 cut(s) 92, 217, 549, 555, 678, 684
Hpy188III TCNNGA 5 cut(s) 27, 424, 524, 699, 802
Hpy8I GTNNAC 6 cut(s) 139, 151, 286, 376, 481, 736
Hpy99I CGWCG 8 cut(s) 62, 65, 191, 226, 341, 383, 520, 559
HpyAV CCTTC 2 cut(s) 189, 1000
HpyCH4III ACNGT 2 cut(s) 126, 875
HpyCH4IV ACGT 7 cut(s) 7, 60, 221, 372, 378, 633, 738
HpyCH4V TGCA 4 cut(s) 52, 457, 816, 930
HpyF3I CTNAG 3 cut(s) 79, 398, 996
HpySE526I ACGT 7 cut(s) 7, 60, 221, 372, 378, 633, 738
Hsp92I GRCGYC 2 cut(s) 60, 201
HspAI GCGC 4 cut(s) 310, 889, 910, 989
Kzo9I GATC 5 cut(s) 162, 432, 474, 544, 695
LguI GCTCTTC 1 cut(s) 599
LmnI GCTCC 3 cut(s) 149, 883, 1009
Lsp1109I GCAGC 5 cut(s) 127, 585, 643, 873, 959
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 941
MaeII ACGT 7 cut(s) 7, 60, 221, 372, 378, 633, 738
MaeIII GTNAC 4 cut(s) 3, 8, 649, 836
MalI GATC 5 cut(s) 164, 434, 476, 546, 697
MboI GATC 5 cut(s) 162, 432, 474, 544, 695
MboII GAAGA 7 cut(s) 157, 174, 435, 542, 575, 616, 763
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 695
MlsI TGGCCA 1 cut(s) 966
MluCI AATT 4 cut(s) 486, 501, 536, 863
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 2 cut(s) 559, 839
MmeI TCCRAC 3 cut(s) 240, 578, 648
Mox20I TGGCCA 1 cut(s) 966
MscI TGGCCA 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 966
MspA1I CMGCKG 2 cut(s) 656, 689
MspI CCGG 4 cut(s) 271, 647, 893, 945
MspR9I CCNGG 2 cut(s) 791, 893
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 1 cut(s) 791
MvnI CGCG 3 cut(s) 492, 910, 989
NciI CCSGG 1 cut(s) 893
NdeI CATATG 1 cut(s) 961
NdeII GATC 5 cut(s) 162, 432, 474, 544, 695
NheI GCTAGC 1 cut(s) 940
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 3 cut(s) 3, 649, 836
PceI AGGCCT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 679, 702, 898
Pfl23II CGTACG 1 cut(s) 126
PkrI GCNGC 9 cut(s) 117, 325, 494, 600, 658, 670, 691, 888, 974
PleI GAGTC 2 cut(s) 558, 838
PpsI GAGTC 2 cut(s) 558, 838
Ppu21I YACGTR 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 923
Psp6I CCWGG 1 cut(s) 789
PspEI GGTNACC 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 1034
PspGI CCWGG 1 cut(s) 789
PspLI CGTACG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 3 cut(s) 170, 262, 621
PstI CTGCAG 1 cut(s) 932
PstNI CAGNNNCTG 2 cut(s) 256, 300
PsuI RGATCY 1 cut(s) 695
RsaI GTAC 2 cut(s) 128, 737
RsaNI GTAC 2 cut(s) 127, 736
RseI CAYNNNNRTG 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 599
SatI GCNGC 9 cut(s) 116, 324, 493, 599, 657, 669, 690, 887, 973
Sau3AI GATC 5 cut(s) 162, 432, 474, 544, 695
Sau96I GGNCC 3 cut(s) 170, 262, 621
SchI GAGTC 2 cut(s) 559, 839
ScrFI CCNGG 2 cut(s) 791, 893
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 928
SinI GGWCC 3 cut(s) 170, 262, 621
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 4 cut(s) 486, 501, 536, 863
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 1 cut(s) 941
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 789, 891
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 126, 875
TaiI ACGT 7 cut(s) 10, 63, 224, 375, 381, 636, 741
TaqI TCGA 4 cut(s) 161, 381, 435, 700
TaqII GACCGA 2 cut(s) 158, 935
TasI AATT 4 cut(s) 486, 501, 536, 863
TauI GCSGC 4 cut(s) 326, 495, 671, 692
TfiI GAWTC 3 cut(s) 679, 702, 898
TscAI CASTG 4 cut(s) 25, 724, 863, 1000
TseFI GTSAC 3 cut(s) 3, 649, 836
TseI GCWGC 5 cut(s) 115, 598, 656, 886, 972
Tsp45I GTSAC 3 cut(s) 3, 649, 836
TspGWI ACGGA 3 cut(s) 136, 175, 498
TspRI CASTG 4 cut(s) 25, 724, 863, 1000
VpaK11BI GGWCC 3 cut(s) 170, 262, 621
XagI CCTNNNNNAGG 1 cut(s) 317
XapI RAATTY 1 cut(s) 486
XspI CTAG 1 cut(s) 941
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.