Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Reverse (-)

26026253 .. 26027771

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGGCGTGGAGTTAGTGCAGGTGGAGGACAAAGTTCTTTGGGATATCTTTTTGGGAGCGGAGAGGCTCCAAAGCTAGCAGCCGTTAACAAAACTCCAGCTGAAACTGAGTCTTCTGCTCATGCTCCACCTACTCAAGCTGCTGCTGCAAACGCTGTTGATAGCATCAAACAAGTTCCTGCTGGTCTCAATAGCAACTCTGCAAACAATTACATGCGTGCAGAAGGACAAAACACAGGCAATTTCATCACGGACCGACCATCGACCAAGGTTCACTCAGCTCCAGGAGGTGGCTCGTCTCTTGATTACCTCTTTGGTGGTGGTAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

10.88

Weight (kDa)

6.71

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	76, 101, 140, 281
AluI	AGCT	4 cut(s)	76, 101, 140, 281
Alw26I	GTCTC	2 cut(s)	191, 303
ApeKI	GCWGC	4 cut(s)	80, 140, 143, 146
AspS9I	GGNCC	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	92, 127, 130, 133
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	191, 303
BfaI	CTAG	2 cut(s)	77, 331
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	4 cut(s)	81, 141, 144, 147
BlsI	GCNGC	4 cut(s)	82, 142, 145, 148
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	2 cut(s)	81, 267
BpuEI	CTTGAG	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	99, 291
BseXI	GCAGC	4 cut(s)	92, 127, 130, 133
BsgI	GTGCAG	2 cut(s)	39, 240
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	191, 303
BsmBI	CGTCTC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	100, 290
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	78, 219
BstDEI	CTNAG	2 cut(s)	108, 277
BstMAI	GTCTC	2 cut(s)	191, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 152
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	4 cut(s)	92, 127, 130, 133
BstV2I	GAAGAC	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	78, 219
Cfr13I	GGNCC	1 cut(s)	253
CpoI	CGGWCCG	1 cut(s)	253
CspI	CGGWCCG	1 cut(s)	253
CviAII	CATG	2 cut(s)	122, 214
CviJI	RGCY	7 cut(s)	68, 76, 83, 101, 140, 281, 294
CviKI_1	RGCY	7 cut(s)	68, 76, 83, 101, 140, 281, 294
DdeI	CTNAG	2 cut(s)	108, 277
Eco130I	CCWWGG	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	125, 217
FaiI	YATR	2 cut(s)	123, 215
FatI	CATG	2 cut(s)	121, 213
Fnu4HI	GCNGC	4 cut(s)	81, 141, 144, 147
Fsp4HI	GCNGC	4 cut(s)	81, 141, 144, 147
FspBI	CTAG	2 cut(s)	77, 331
GluI	GCNGC	4 cut(s)	81, 141, 144, 147
GsuI	CTGGAG	2 cut(s)	81, 267
Hin1II	CATG	2 cut(s)	125, 217
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	110
HpaI	GTTAAC	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	88, 274
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	2 cut(s)	88, 274
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	20, 149, 203, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 152
HpyF3I	CTNAG	2 cut(s)	108, 277
Hsp92II	CATG	2 cut(s)	125, 217
KspAI	GTTAAC	1 cut(s)	88
LmnI	GCTCC	4 cut(s)	57, 73, 130, 286
LpnPI	CCDG	7 cut(s)	6, 111, 168, 192, 222, 270, 297
Lsp1109I	GCAGC	4 cut(s)	92, 127, 130, 133
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	77, 331
MbiI	CCGCTC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	105
MluCI	AATT	2 cut(s)	208, 241
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	20, 58, 281, 320
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	146, 152
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	125, 217
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	82, 142, 145, 148
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	101
Rsr2I	CGGWCCG	1 cut(s)	253
RsrII	CGGWCCG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	4 cut(s)	81, 141, 144, 147
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	9 cut(s)	25, 78, 103, 133, 142, 273, 283, 292, 312
SfaNI	GCATC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	208, 241
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	2 cut(s)	77, 331
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	208, 241
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	4 cut(s)	80, 140, 143, 146
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	77, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.