Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

16506390 .. 16508377

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTCGTGGAGTCAGCAGTGGAGGGGGAGAGAGTTCTTTGGGATATCTTTTTGGAGGTGGAGAAGAAATTAAAAAACCCGCCCCAAAGAAGGTTGATGCTCCTCAGAACCAGGCACCAGTTCCAAGCACTGAACCACCTTCTCAGAAGCCTACTGCTCCAACAACACCTGCAGAAGTCAATAAGCAGACTCCAGCAGGCGTTCCTGGGAACACTTCAAACAACTATTTCCGAGCTGATGGCCAGAACTGTGGCAACTTCCTCACGGATCGGCCATCGACAAAGGTGCATGCAGCTCCTGGTGGTGGATCATCCCTAGATTACCTTTTTGGAGGCGGTAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

11.62

Weight (kDa)

7.86

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	2 cut(s)	81, 336
AclWI	GGATC	2 cut(s)	276, 316
AcoI	YGGCCR	2 cut(s)	241, 272
AfiI	CCNNNNNNNGG	2 cut(s)	91, 305
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	3 cut(s)	111, 205, 298
AluBI	AGCT	2 cut(s)	236, 296
AluI	AGCT	2 cut(s)	236, 296
AlwI	GGATC	2 cut(s)	276, 316
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	241, 272
ApeKI	GCWGC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	233, 283
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	3 cut(s)	113, 207, 300
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	113, 207, 300
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	3 cut(s)	113, 207, 300
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 305
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	3 cut(s)	113, 207, 300
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	91, 305
BseMII	CTCAG	2 cut(s)	119, 158
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	2 cut(s)	243, 274
BshNI	GGYRCC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	91, 305
BsnI	GGCC	2 cut(s)	243, 274
Bsp143I	GATC	2 cut(s)	268, 308
BspACI	CCGC	2 cut(s)	81, 336
BspANI	GGCC	2 cut(s)	243, 274
BspCNI	CTCAG	2 cut(s)	118, 157
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	276, 316
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	268, 308
Bst2UI	CCWGG	3 cut(s)	113, 207, 300
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	199, 291
BstDEI	CTNAG	2 cut(s)	105, 144
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	271, 311
BstMBI	GATC	2 cut(s)	268, 308
BstNI	CCWGG	3 cut(s)	113, 207, 300
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	111, 205, 298
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	243, 274
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 129
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	199, 291
CaiI	CAGNNNCTG	1 cut(s)	299
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	5 cut(s)	151, 236, 243, 274, 296
CviKI_1	RGCY	5 cut(s)	151, 236, 243, 274, 296
DdeI	CTNAG	2 cut(s)	105, 144
DpnI	GATC	2 cut(s)	270, 310
DpnII	GATC	2 cut(s)	268, 308
EaeI	YGGCCR	2 cut(s)	241, 272
Eco32I	GATATC	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	111, 205, 298
EcoRV	GATATC	1 cut(s)	47
FaeI	CATG	1 cut(s)	293
FaiI	YATR	1 cut(s)	291
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	243, 274
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	2 cut(s)	12, 190
Hpy188I	TCNGA	3 cut(s)	108, 147, 233
HpyAV	CCTTC	2 cut(s)	85, 150
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	173, 289, 293
HpyF3I	CTNAG	2 cut(s)	105, 144
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	268, 308
LmnI	GCTCC	3 cut(s)	106, 163, 301
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	317
MalI	GATC	2 cut(s)	270, 310
MboI	GATC	2 cut(s)	268, 308
MboII	GAAGA	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	69, 343
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	21, 184
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	17, 50, 114, 272, 326
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	72, 346
Msp20I	TGGCCA	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	113, 207, 300
MvaI	CCWGG	3 cut(s)	113, 207, 300
NdeII	GATC	2 cut(s)	268, 308
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	20, 184
PpsI	GAGTC	2 cut(s)	20, 184
Psp6I	CCWGG	3 cut(s)	111, 205, 298
PspGI	CCWGG	3 cut(s)	111, 205, 298
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	72, 346
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	268, 308
SchI	GAGTC	2 cut(s)	21, 184
ScrFI	CCNGG	3 cut(s)	113, 207, 300
SetI	ASST	8 cut(s)	61, 96, 142, 172, 238, 288, 298, 327
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	69, 343
SsiI	CCGC	2 cut(s)	81, 336
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	111, 205, 298
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	69, 343
Tru1I	TTAA	2 cut(s)	72, 346
Tru9I	TTAA	2 cut(s)	72, 346
TscAI	CASTG	2 cut(s)	25, 136
TseI	GCWGC	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	25, 136
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.