Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

3839570 .. 3841402

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCGTCGTGGAGTCAGTAGTGGAGGGGGAGGGAGTTCTTTGGGCTATCTTTTTGGAGGCGGTGAAGAAGGTCAGAATCCCGCCCCAAAAAAGGTTGAAACTCCTAAGGTTCAGGTGGAGGTTGAACCTACTCAGAAGCCTGCTGCTGCGGCACCACCTGCGGAAGTGATCAATAAGGAGACTCCAGCAGGCGTTCCTGGGAACACTTCAAACAACTACTTCCGAGCTGATGGCCAGAACCGTGGAAACTTCCTCACGGATCGTCCATCCACAAAGGTCCATTCAGCTCCTGGTGGGGGTTCATCTCTAGATTACCTGTTTGGAGGTGGTGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.37

Weight (kDa)

8.03

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	151
AciI	CCGC	4 cut(s)	60, 81, 149, 161
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	232, 331
AfiI	CCNNNNNNNGG	2 cut(s)	91, 296
AgsI	TTSAA	3 cut(s)	98, 125, 210
AjnI	CCWGG	2 cut(s)	196, 289
AluBI	AGCT	2 cut(s)	227, 287
AluI	AGCT	2 cut(s)	227, 287
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	232, 331
ApeKI	GCWGC	2 cut(s)	143, 146
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	105
BalI	TGGCCA	2 cut(s)	234, 333
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	130, 133
BccI	CCATC	2 cut(s)	224, 274
BciT130I	CCWGG	2 cut(s)	198, 291
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	144, 147, 150
BlsI	GCNGC	3 cut(s)	145, 148, 151
Bme1390I	CCNGG	2 cut(s)	198, 291
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	198, 291
BpmI	CTGGAG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	197, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 296
Bse1I	ACTGG	1 cut(s)	334
Bse21I	CCTNAGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	198, 291
BseDI	CCNNGG	2 cut(s)	197, 241
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	91, 296
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	130, 133
BshFI	GGCC	2 cut(s)	234, 333
BshNI	GGYRCC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	91, 296
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	234, 333
Bsp143I	GATC	2 cut(s)	168, 259
BspACI	CCGC	4 cut(s)	60, 81, 149, 161
BspANI	GGCC	2 cut(s)	234, 333
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	197, 241
BssMI	GATC	2 cut(s)	168, 259
Bst2UI	CCWGG	2 cut(s)	198, 291
Bst4CI	ACNGT	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	141, 190
BstDEI	CTNAG	2 cut(s)	105, 132
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	171, 262
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	168, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNI	CCWGG	2 cut(s)	198, 291
BstSCI	CCNGG	2 cut(s)	196, 289
BstV1I	GCAGC	2 cut(s)	130, 133
BstXI	CCANNNNNNTGG	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	234, 333
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	141, 190
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	277
CviJI	RGCY	6 cut(s)	45, 139, 227, 234, 287, 333
CviKI_1	RGCY	6 cut(s)	45, 139, 227, 234, 287, 333
DdeI	CTNAG	2 cut(s)	105, 132
DpnI	GATC	2 cut(s)	170, 261
DpnII	GATC	2 cut(s)	168, 259
EaeI	YGGCCR	2 cut(s)	232, 331
Eco47I	GGWCC	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	196, 289
FauI	CCCGC	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	144, 147, 150
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	144, 147, 150
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	144, 147, 150
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	234, 333
HinfI	GANTC	3 cut(s)	12, 76, 181
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	75, 135, 224
Hpy188III	TCNNGA	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	2 cut(s)	105, 132
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 259
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	130, 133
MaeI	CTAG	1 cut(s)	308
MalI	GATC	2 cut(s)	170, 261
MboI	GATC	2 cut(s)	168, 259
MboII	GAAGA	1 cut(s)	77
MlsI	TGGCCA	2 cut(s)	234, 333
MluNI	TGGCCA	2 cut(s)	234, 333
MlyI	GAGTC	2 cut(s)	21, 175
MnlI	CCTC	6 cut(s)	17, 23, 50, 112, 263, 317
Mox20I	TGGCCA	2 cut(s)	234, 333
MscI	TGGCCA	2 cut(s)	234, 333
Msp20I	TGGCCA	2 cut(s)	234, 333
MspR9I	CCNGG	2 cut(s)	198, 291
MvaI	CCWGG	2 cut(s)	198, 291
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	2 cut(s)	168, 259
NlaIV	GGNNCC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	145, 148, 151
PleI	GAGTC	2 cut(s)	20, 175
PpsI	GAGTC	2 cut(s)	20, 175
Psp6I	CCWGG	2 cut(s)	196, 289
PspGI	CCWGG	2 cut(s)	196, 289
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	290
SatI	GCNGC	3 cut(s)	144, 147, 150
Sau3AI	GATC	2 cut(s)	168, 259
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	21, 175
ScrFI	CCNGG	2 cut(s)	198, 291
SinI	GGWCC	1 cut(s)	277
SsiI	CCGC	4 cut(s)	60, 81, 149, 161
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	196, 289
TaaI	ACNGT	1 cut(s)	242
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	143, 146
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	277
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.