Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

4695333 .. 4696747

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1068700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCTCTGGTTAGAAAAAAACAAATCCAAACGCGAACAAACCTCTCTGTTGCTTTTGCAGGGCTCCAAAATTCAGGCCCCAAGAGCAAGAGGAAGCAAAAACAACGAAAAGAAAACATGGGGCGTGGAGTCAGCTGCGGTGGTGGAAAAAGCTCTTTGGGGTATTTGTTTGGAGGTGGAGAGACTGCCACTGCTAACAAAACCCCAAAAACTACTAACAGCACACCACCTCCACCCCAGAATGCTAGCCCAGCTCCTGCTCCTGCTCCTGCTCCTTCTCCAGCTCCTGCTTCGTCACCGAGCGGTAAGCAGCTTCCAGCCGGAATTCACAGCAAGCCTACGAACAATTACCTCCGAGTTGATGGCCAGAACTGCGGAAATTTCATCACGGATCGTCCATCGACCAAGGTTCACGCGGCTCCCGGTGGCGGATCATCCCTTGGCTATTTGTTTGGTGGTGGGAGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

158

Amino Acids

15.96

Weight (kDa)

10.6

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	303
AccII	CGCG	2 cut(s)	34, 416
AciI	CCGC	5 cut(s)	138, 303, 375, 416, 429
AclWI	GGATC	2 cut(s)	399, 439
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	70, 324, 379
AfiI	CCNNNNNNNGG	1 cut(s)	428
AluBI	AGCT	5 cut(s)	135, 153, 254, 284, 313
AluI	AGCT	5 cut(s)	135, 153, 254, 284, 313
Alw26I	GTCTC	2 cut(s)	9, 176
AlwI	GGATC	2 cut(s)	399, 439
AlwNI	CAGNNNCTG	2 cut(s)	257, 287
AoxI	GGCC	2 cut(s)	76, 364
ApeKI	GCWGC	2 cut(s)	135, 310
ApoI	RAATTY	3 cut(s)	70, 324, 379
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	288
AsuNHI	GCTAGC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	122, 322
BccI	CCATC	2 cut(s)	356, 406
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	9, 176
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	3 cut(s)	136, 311, 417
BlsI	GCNGC	3 cut(s)	137, 312, 418
Bme1390I	CCNGG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	65, 79, 420
BmrFI	CCNGG	1 cut(s)	423
BmtI	GCTAGC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	405, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	405, 439
BseGI	GGATG	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	122, 322
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	2 cut(s)	34, 416
BshFI	GGCC	2 cut(s)	78, 366
BsiSI	CCGG	2 cut(s)	321, 423
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	9, 176
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	78, 366
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	391, 431
BspACI	CCGC	5 cut(s)	138, 303, 375, 416, 429
BspANI	GGCC	2 cut(s)	78, 366
BspFNI	CGCG	2 cut(s)	34, 416
BspLI	GGNNCC	3 cut(s)	65, 79, 420
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	399, 439
BsrBI	CCGCTC	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	405, 439
BssMI	GATC	2 cut(s)	391, 431
BssT1I	CCWWGG	2 cut(s)	405, 439
BstC8I	GCNNGC	2 cut(s)	247, 335
BstF5I	GGATG	1 cut(s)	434
BstFNI	CGCG	2 cut(s)	34, 416
BstKTI	GATC	2 cut(s)	394, 434
BstMAI	GTCTC	2 cut(s)	9, 176
BstMBI	GATC	2 cut(s)	391, 431
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 251, 372
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	2 cut(s)	34, 416
BstV1I	GCAGC	2 cut(s)	122, 322
BsuRI	GGCC	2 cut(s)	78, 366
BtsCI	GGATG	1 cut(s)	434
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	247, 335
CaiI	CAGNNNCTG	2 cut(s)	257, 287
Cfr13I	GGNCC	1 cut(s)	77
CviAII	CATG	1 cut(s)	118
DpnI	GATC	2 cut(s)	393, 433
DpnII	GATC	2 cut(s)	391, 431
EaeI	YGGCCR	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	444
Eco130I	CCWWGG	2 cut(s)	405, 439
Eco24I	GRGCYC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	405, 439
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	405, 439
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	136, 311, 417
FokI	GGATG	1 cut(s)	421
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	136, 311, 417
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	3 cut(s)	136, 311, 417
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	78, 366
HapII	CCGG	2 cut(s)	321, 423
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	321, 423
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 251, 372
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	391, 431
LmnI	GCTCC	7 cut(s)	69, 259, 265, 271, 277, 289, 424
Lsp1109I	GCAGC	2 cut(s)	122, 322
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	2 cut(s)	393, 433
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	2 cut(s)	391, 431
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	4 cut(s)	70, 324, 346, 379
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	53, 84, 167, 240, 362
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	321, 423
MspR9I	CCNGG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	247
MvnI	CGCG	2 cut(s)	34, 416
MwoI	GCNNNNNNNGC	3 cut(s)	84, 251, 372
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	391, 431
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	3 cut(s)	65, 79, 420
NmuCI	GTSAC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	137, 312, 418
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	65, 79, 420
PspPI	GGNCC	1 cut(s)	77
PstNI	CAGNNNCTG	2 cut(s)	257, 287
PvuII	CAGCTG	1 cut(s)	135
SatI	GCNGC	3 cut(s)	136, 311, 417
Sau3AI	GATC	2 cut(s)	391, 431
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	66
Sse9I	AATT	4 cut(s)	70, 324, 346, 379
SsiI	CCGC	5 cut(s)	138, 303, 375, 416, 429
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	405, 439
TaqI	TCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	70, 324, 346, 379
TauI	GCSGC	1 cut(s)	419
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	135, 310
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	3 cut(s)	70, 324, 379
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.