SPIRAL1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69230 AT1G69230 |
| fragaria_vesca | FvH4_5g13660 FvH4_6g46690 |
| malus_domestica | MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1 |
| prunus_persica | Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1 |
| pyrus_communis | pycom06g18110 pycom17g06150 |
| rosa_chinensis | RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301 |
| rosa_laevigata | RLG00000005059 RLG00000021539 |
| rosa_multiflora | Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00270590 |
| rosa_rugosa | Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300 |
| rosa_samantha | Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500 |
| rosa_wichuraiana | Rw2G048400 Rw2G048550 Rw7G004750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 42 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 31, 96 |
| AgsI | TTSAA | 2 cut(s) | 31, 211 |
| AleI | CACNNNNGTG | 1 cut(s) | 248 |
| AluBI | AGCT | 1 cut(s) | 22 |
| AluI | AGCT | 1 cut(s) | 22 |
| Alw21I | GWGCWC | 1 cut(s) | 113 |
| AlwI | GGATC | 1 cut(s) | 42 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| AsuNHI | GCTAGC | 1 cut(s) | 224 |
| Bbv12I | GWGCWC | 1 cut(s) | 113 |
| BccI | CCATC | 1 cut(s) | 192 |
| BclI | TGATCA | 1 cut(s) | 252 |
| BfaI | CTAG | 1 cut(s) | 225 |
| BmiI | GGNNCC | 2 cut(s) | 119, 182 |
| BmsI | GCATC | 3 cut(s) | 60, 205, 220 |
| BmtI | GCTAGC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 2 cut(s) | 64, 127 |
| BsaJI | CCNNGG | 2 cut(s) | 95, 219 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 31, 96 |
| BseDI | CCNNGG | 2 cut(s) | 95, 219 |
| BseGI | GGATG | 2 cut(s) | 37, 165 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 31, 96 |
| BsiHKAI | GWGCWC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 31, 96 |
| Bsp1286I | GDGCHC | 1 cut(s) | 113 |
| Bsp143I | GATC | 2 cut(s) | 34, 252 |
| Bsp19I | CCATGG | 2 cut(s) | 95, 219 |
| BspLI | GGNNCC | 2 cut(s) | 119, 182 |
| BspOI | GCTAGC | 1 cut(s) | 228 |
| BspPI | GGATC | 1 cut(s) | 42 |
| BssECI | CCNNGG | 2 cut(s) | 95, 219 |
| BssMI | GATC | 2 cut(s) | 34, 252 |
| BssT1I | CCWWGG | 2 cut(s) | 95, 219 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 226 |
| BstDSI | CCRYGG | 2 cut(s) | 95, 219 |
| BstEII | GGTNACC | 1 cut(s) | 241 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 29 |
| BstF5I | GGATG | 2 cut(s) | 37, 165 |
| BstKTI | GATC | 2 cut(s) | 37, 255 |
| BstMBI | GATC | 2 cut(s) | 34, 252 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 230 |
| BstPI | GGTNACC | 1 cut(s) | 241 |
| BtgI | CCRYGG | 2 cut(s) | 95, 219 |
| BtgZI | GCGATG | 1 cut(s) | 243 |
| BtsCI | GGATG | 2 cut(s) | 37, 165 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 226 |
| CviAII | CATG | 2 cut(s) | 96, 220 |
| CviJI | RGCY | 5 cut(s) | 18, 22, 48, 190, 224 |
| CviKI_1 | RGCY | 5 cut(s) | 18, 22, 48, 190, 224 |
| DpnI | GATC | 2 cut(s) | 36, 254 |
| DpnII | GATC | 2 cut(s) | 34, 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| Eco130I | CCWWGG | 2 cut(s) | 95, 219 |
| Eco91I | GGTNACC | 1 cut(s) | 241 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 29 |
| EcoO65I | GGTNACC | 1 cut(s) | 241 |
| EcoT14I | CCWWGG | 2 cut(s) | 95, 219 |
| ErhI | CCWWGG | 2 cut(s) | 95, 219 |
| FaeI | CATG | 2 cut(s) | 99, 223 |
| FaiI | YATR | 2 cut(s) | 97, 221 |
| FatI | CATG | 2 cut(s) | 95, 219 |
| FbaI | TGATCA | 1 cut(s) | 252 |
| FokI | GGATG | 2 cut(s) | 24, 172 |
| FspBI | CTAG | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 99, 223 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 1 cut(s) | 281 |
| Hpy99I | CGWCG | 1 cut(s) | 263 |
| HpyAV | CCTTC | 1 cut(s) | 25 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 1 cut(s) | 267 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 230 |
| Hsp92II | CATG | 2 cut(s) | 99, 223 |
| Ksp22I | TGATCA | 1 cut(s) | 252 |
| Kzo9I | GATC | 2 cut(s) | 34, 252 |
| LmnI | GCTCC | 1 cut(s) | 27 |
| LpnPI | CCDG | 3 cut(s) | 32, 93, 259 |
| LweI | GCATC | 3 cut(s) | 60, 205, 220 |
| MaeI | CTAG | 1 cut(s) | 225 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 2 cut(s) | 36, 254 |
| MboI | GATC | 2 cut(s) | 34, 252 |
| MboII | GAAGA | 2 cut(s) | 49, 199 |
| MhlI | GDGCHC | 1 cut(s) | 113 |
| MseI | TTAA | 1 cut(s) | 62 |
| MslI | CAYNNNNRTG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 230 |
| NcoI | CCATGG | 2 cut(s) | 95, 219 |
| NdeII | GATC | 2 cut(s) | 34, 252 |
| NheI | GCTAGC | 1 cut(s) | 224 |
| NlaIII | CATG | 2 cut(s) | 99, 223 |
| NlaIV | GGNNCC | 2 cut(s) | 119, 182 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| OliI | CACNNNNGTG | 1 cut(s) | 248 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 96 |
| PspEI | GGTNACC | 1 cut(s) | 241 |
| PspN4I | GGNNCC | 2 cut(s) | 119, 182 |
| RseI | CAYNNNNRTG | 1 cut(s) | 248 |
| SaqAI | TTAA | 1 cut(s) | 62 |
| Sau3AI | GATC | 2 cut(s) | 34, 252 |
| SduI | GDGCHC | 1 cut(s) | 113 |
| SetI | ASST | 2 cut(s) | 12, 24 |
| SfaNI | GCATC | 3 cut(s) | 60, 205, 220 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 248 |
| SmlI | CTYRAG | 2 cut(s) | 43, 106 |
| SmoI | CTYRAG | 2 cut(s) | 43, 106 |
| SspMI | CTAG | 1 cut(s) | 225 |
| StyI | CCWWGG | 2 cut(s) | 95, 219 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TaqI | TCGA | 2 cut(s) | 75, 258 |
| Tru1I | TTAA | 1 cut(s) | 62 |
| Tru9I | TTAA | 1 cut(s) | 62 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 96 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 29 |
| XspI | CTAG | 1 cut(s) | 225 |