Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

4994159 .. 4994922

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1061700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGCGTGGACGTGGAGTCAGCTGTGGTGGTGGACAAAGCTCTTTGGGGTATTTGTTCGGAGGTGGAGAGACAGCTAATGCTAACAAAACCCCAAAAACTACTAACAACACACCACCACCACCACCTCGGAATGCTAACCCAGCTCCTGCTCCAGCTCCAGCTCCTGCTTCATCACCGATTGATAAGCAGCTTCCAGCCGGCATTCACAGCAAGCGTACGAACAATTACTTCCGAGTTGATGGCCAGAACTGCGGAAATTTCATCACGGATCGTCCATCGACCAAGGTTCACTCCGCTCCCGGCGGCGGATCATCCCTTGGCTACTTGTTTGGTGGTGGGAGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

11.73

Weight (kDa)

10.02

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	4 cut(s)	255, 297, 306, 309
AclWI	GGATC	2 cut(s)	279, 319
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	308
AhdI	GACNNNNNGTC	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	7 cut(s)	24, 42, 77, 146, 158, 164, 193
AluI	AGCT	7 cut(s)	24, 42, 77, 146, 158, 164, 193
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	279, 319
AlwNI	CAGNNNCTG	2 cut(s)	149, 167
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	236, 286
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	191, 307
BlsI	GCNGC	2 cut(s)	192, 308
Bme1390I	CCNGG	1 cut(s)	303
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	303
BpmI	CTGGAG	2 cut(s)	138, 144
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	128, 285, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	128, 285, 319
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	201, 303
BsiWI	CGTACG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	139, 204
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	271, 311
BspACI	CCGC	4 cut(s)	255, 297, 306, 309
BspANI	GGCC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	279, 319
BsrBI	CCGCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	128, 285, 319
BssMI	GATC	2 cut(s)	271, 311
BssT1I	CCWWGG	2 cut(s)	285, 319
BstC8I	GCNNGC	2 cut(s)	202, 215
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	274, 314
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	271, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 210, 252
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	202, 215
CaiI	CAGNNNCTG	2 cut(s)	149, 167
Cfr10I	RCCGGY	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	219
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	2 cut(s)	273, 313
DpnII	GATC	2 cut(s)	271, 311
DriI	GACNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	285, 319
EcoT14I	CCWWGG	2 cut(s)	285, 319
ErhI	CCWWGG	2 cut(s)	285, 319
Fnu4HI	GCNGC	2 cut(s)	191, 307
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	191, 307
GluI	GCNGC	2 cut(s)	191, 307
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	138, 144
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	201, 303
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	2 cut(s)	201, 303
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	3 cut(s)	11, 35, 292
Hpy188I	TCNGA	3 cut(s)	62, 132, 236
Hpy8I	GTNNAC	3 cut(s)	11, 35, 292
HpyCH4IV	ACGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 210, 252
HpySE526I	ACGT	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	271, 311
LmnI	GCTCC	5 cut(s)	151, 157, 163, 169, 304
LpnPI	CCDG	9 cut(s)	156, 162, 168, 174, 180, 210, 214, 260, 316
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	13
MalI	GATC	2 cut(s)	273, 313
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	271, 311
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	2 cut(s)	226, 259
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	56, 138
Mox20I	TGGCCA	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	201, 303
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	139, 204
MwoI	GCNNNNNNNGC	3 cut(s)	143, 210, 252
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	271, 311
NgoMIV	GCCGGC	1 cut(s)	200
PctI	GAATGC	2 cut(s)	139, 204
PdiI	GCCGGC	1 cut(s)	202
Pfl23II	CGTACG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	192, 308
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	142
PspLI	CGTACG	1 cut(s)	218
PstNI	CAGNNNCTG	2 cut(s)	149, 167
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	191, 307
Sau3AI	GATC	2 cut(s)	271, 311
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	226, 259
SsiI	CCGC	4 cut(s)	255, 297, 306, 309
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	285, 319
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	226, 259
TauI	GCSGC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	162, 253
TspGWI	ACGGA	1 cut(s)	284
XapI	RAATTY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.