Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Reverse (-)

24182020 .. 24183457

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGCGTGGACGTGGAGTCAGTTGTGGTGGTGGGCAAAGTTCTTTGGGCTATTTGTTTGGAGGTGGAGAGACTGCTAATGTTAACAAGACCCTATCTAAAAGAACTCAAAACCCAGTGAGGGCAGCAGGGGAGGCTCCTTCTCAGAATGAGACTGCTCCTGCCCCTGCTTTTGCTCCAGCTTCAGCTTCGTCACCGATTGATAAGCAGCAGATAGCAGCAGGCCTCCATGGGAAGCCTACAAACAATTACCACCGAGCTGAGGGCCAGAATTGCGGCAACTTCATCACGGATCGTCCATCTACCAAGGTTCACTCTGCTCCTGGTGGCGGATCATCGCTTGGTTACTTGTTTGGTAGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

12.29

Weight (kDa)

9.62

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	276, 330
AclWI	GGATC	2 cut(s)	300, 340
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	121, 262, 329
AhdI	GACNNNNNGTC	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	3 cut(s)	182, 188, 260
AluI	AGCT	3 cut(s)	182, 188, 260
Alw26I	GTCTC	2 cut(s)	65, 146
AlwI	GGATC	2 cut(s)	300, 340
AoxI	GGCC	2 cut(s)	223, 265
ApeKI	GCWGC	3 cut(s)	125, 208, 218
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	137, 220, 230
BccI	CCATC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	65, 146
BisI	GCNGC	4 cut(s)	126, 209, 219, 277
BlsI	GCNGC	4 cut(s)	127, 210, 220, 278
Bme1390I	CCNGG	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	229, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 262, 329
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	229, 306
BseLI	CCNNNNNNNGG	3 cut(s)	121, 262, 329
BseMII	CTCAG	2 cut(s)	158, 252
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	137, 220, 230
BshFI	GGCC	2 cut(s)	225, 267
BslI	CCNNNNNNNGG	3 cut(s)	121, 262, 329
BsmAI	GTCTC	2 cut(s)	65, 146
BsnI	GGCC	2 cut(s)	225, 267
Bsp143I	GATC	2 cut(s)	292, 332
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	2 cut(s)	276, 330
BspANI	GGCC	2 cut(s)	225, 267
BspCNI	CTCAG	2 cut(s)	157, 253
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	300, 340
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	229, 306
BssMI	GATC	2 cut(s)	292, 332
BssT1I	CCWWGG	2 cut(s)	229, 306
Bst2UI	CCWGG	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	144, 261
BstDSI	CCRYGG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	295, 335
BstMAI	GTCTC	2 cut(s)	65, 146
BstMBI	GATC	2 cut(s)	292, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 273
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	137, 220, 230
BsuRI	GGCC	2 cut(s)	225, 267
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	8 cut(s)	51, 137, 182, 188, 225, 238, 260, 267
CviKI_1	RGCY	8 cut(s)	51, 137, 182, 188, 225, 238, 260, 267
DdeI	CTNAG	2 cut(s)	144, 261
DpnI	GATC	2 cut(s)	294, 334
DpnII	GATC	2 cut(s)	292, 332
DriI	GACNNNNNGTC	1 cut(s)	17
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	229, 306
Eco147I	AGGCCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	229, 306
ErhI	CCWWGG	2 cut(s)	229, 306
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	126, 209, 219, 277
Fsp4HI	GCNGC	4 cut(s)	126, 209, 219, 277
GluI	GCNGC	4 cut(s)	126, 209, 219, 277
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	225, 267
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	18
HpaI	GTTAAC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	3 cut(s)	11, 85, 313
Hpy188I	TCNGA	1 cut(s)	147
Hpy8I	GTNNAC	3 cut(s)	11, 85, 313
HpyAV	CCTTC	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 273
HpyF3I	CTNAG	2 cut(s)	144, 261
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	292, 332
LmnI	GCTCC	4 cut(s)	142, 163, 181, 325
LpnPI	CCDG	9 cut(s)	114, 129, 174, 180, 192, 207, 281, 309, 336
Lsp1109I	GCAGC	3 cut(s)	137, 220, 230
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	192, 344
MalI	GATC	2 cut(s)	294, 334
MboI	GATC	2 cut(s)	292, 332
MluCI	AATT	2 cut(s)	247, 271
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	56, 114, 127, 236, 256
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	134, 273
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	292, 332
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	127, 210, 220, 278
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	126, 209, 219, 277
Sau3AI	GATC	2 cut(s)	292, 332
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	6 cut(s)	16, 67, 184, 190, 262, 312
Sse9I	AATT	2 cut(s)	247, 271
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	276, 330
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	2 cut(s)	229, 306
TaiI	ACGT	1 cut(s)	16
TasI	AATT	2 cut(s)	247, 271
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	3 cut(s)	125, 208, 218
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.