Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

21977520 .. 21978132

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTCGCGGAGTCAGCAGTGGAGGTGGGGAGAGTTCTTTGGGCTACCTGTTTGGGGGTGGAGAAGAAACTCAGACTCCTGCCCCGAAAAAGGTTACAGCTCCTCAGAACCAGGCCCCGGTTCCAACCACTGAATCACCTGCTCAGAAGCCTACTGCTTCCGCACCACCTGCAGAAGTCAGTAAGGAGATTCCTGCTGGCGTTCCTGGGAACACCTCGAACAACTATTTCCGAGCTGATGGCCAGAACTGCGGGAACTTCATCACAGATCGCCCATCAACAAAAGTGCATGCAGCTCCGGGTGGTGGATCATCCCTAGACTACCTGTTTGGAGCTGGTGGTGGCGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

11.61

Weight (kDa)

6.55

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	148, 178
Acc36I	ACCTGC	2 cut(s)	148, 178
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	9, 162, 252, 345
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	55, 91, 118, 305
AjnI	CCWGG	2 cut(s)	111, 205
AluBI	AGCT	4 cut(s)	101, 236, 296, 335
AluI	AGCT	4 cut(s)	101, 236, 296, 335
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	114, 241
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	119, 300
AsuHPI	GGTGA	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	233, 283
BciT130I	CCWGG	2 cut(s)	113, 207
BcnI	CCSGG	2 cut(s)	119, 300
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	2 cut(s)	148, 178
BisI	GCNGC	2 cut(s)	294, 346
BlsI	GCNGC	2 cut(s)	295, 347
Bme1390I	CCNGG	4 cut(s)	113, 119, 207, 300
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	117, 123
BmrFI	CCNGG	4 cut(s)	113, 119, 207, 300
BpuMI	CCSGG	2 cut(s)	119, 300
BsaJI	CCNNGG	2 cut(s)	117, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 91, 118, 305
BseBI	CCWGG	2 cut(s)	113, 207
BseDI	CCNNGG	2 cut(s)	117, 206
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	4 cut(s)	55, 91, 118, 305
BseMII	CTCAG	3 cut(s)	86, 119, 158
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	116, 243
BsiSI	CCGG	2 cut(s)	119, 299
BslI	CCNNNNNNNGG	4 cut(s)	55, 91, 118, 305
BsnI	GGCC	2 cut(s)	116, 243
Bsp143I	GATC	2 cut(s)	268, 308
BspACI	CCGC	4 cut(s)	9, 162, 252, 345
BspANI	GGCC	2 cut(s)	116, 243
BspCNI	CTCAG	3 cut(s)	85, 118, 157
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	117, 123
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	2 cut(s)	148, 178
BspPI	GGATC	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	117, 206
BssMI	GATC	2 cut(s)	268, 308
Bst2UI	CCWGG	2 cut(s)	113, 207
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	199, 291
BstDEI	CTNAG	3 cut(s)	72, 105, 144
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	271, 311
BstMBI	GATC	2 cut(s)	268, 308
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 170, 249
BstNI	CCWGG	2 cut(s)	113, 207
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	111, 117, 205, 298
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	116, 243
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 129
BveI	ACCTGC	2 cut(s)	148, 178
Cac8I	GCNNGC	2 cut(s)	199, 291
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	8 cut(s)	45, 101, 116, 151, 236, 243, 296, 335
CviKI_1	RGCY	8 cut(s)	45, 101, 116, 151, 236, 243, 296, 335
DdeI	CTNAG	3 cut(s)	72, 105, 144
DpnI	GATC	2 cut(s)	270, 310
DpnII	GATC	2 cut(s)	268, 308
EaeI	YGGCCR	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	111, 205
FaeI	CATG	1 cut(s)	293
FaiI	YATR	1 cut(s)	291
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	294, 346
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	294, 346
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	294, 346
HaeIII	GGCC	2 cut(s)	116, 243
HapII	CCGG	2 cut(s)	119, 299
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	4 cut(s)	12, 76, 134, 190
HpaII	CCGG	2 cut(s)	119, 299
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	4 cut(s)	75, 108, 147, 233
HpyCH4V	TGCA	3 cut(s)	173, 289, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 170, 249
HpyF3I	CTNAG	3 cut(s)	72, 105, 144
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	268, 308
LmnI	GCTCC	3 cut(s)	106, 301, 332
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	270, 310
MboI	GATC	2 cut(s)	268, 308
MboII	GAAGA	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	21, 70
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	17, 114, 226
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	2 cut(s)	119, 299
MspR9I	CCNGG	4 cut(s)	113, 119, 207, 300
MvaI	CCWGG	2 cut(s)	113, 207
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	15, 170, 249
NciI	CCSGG	2 cut(s)	119, 300
NdeII	GATC	2 cut(s)	268, 308
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	117, 123
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PaqCI	CACCTGC	2 cut(s)	148, 178
PfeI	GAWTC	2 cut(s)	134, 190
PkrI	GCNGC	2 cut(s)	295, 347
PleI	GAGTC	2 cut(s)	20, 70
PpsI	GAGTC	2 cut(s)	20, 70
Psp6I	CCWGG	2 cut(s)	111, 205
PspGI	CCWGG	2 cut(s)	111, 205
PspN4I	GGNNCC	2 cut(s)	117, 123
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	175
SatI	GCNGC	2 cut(s)	294, 346
Sau3AI	GATC	2 cut(s)	268, 308
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	21, 70
ScrFI	CCNGG	4 cut(s)	113, 119, 207, 300
SfcI	CTRYAG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	293
SsiI	CCGC	4 cut(s)	9, 162, 252, 345
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	111, 117, 205, 298
TaqI	TCGA	1 cut(s)	218
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	134, 190
TscAI	CASTG	2 cut(s)	25, 136
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	25, 136
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.