RLG00000005059

SPIRAL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003119
Physical Location & Seq
Reverse (-)
64758111 .. 64758869
759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005059

Sequence Viewer

Length: 336 bp
ATGCGTCGTGGAGTTAGTAGTGGAGGGGGAGGGAGTTCTTTGGGCTATCTTTTTGGAGGCAGTGAAGGTCAGAATCCCACCCCAAAAAAGGTTGAAACTCCTAAGGTTCAGGTGGAGGTTGAACCTACTCAGAAGCCTACTGCTGTGGCACCACCTGCAGAAGTGATCAATAAGGAGACTCCAGCAGGCGTTCCTGGGAACACTTCAAACAACTACTTCCGAGCTGATGGCCAGAACCGTGGAAACTTCCTCACGGATCGTCCATCCACAAAGGTCCATTCAGCTCCTGGTGGGGGTTCATCTCTAGATTACCTGTTTGGAGGTGGTGGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.36

Weight (kDa)

9.1

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 163
Acc36I ACCTGC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 148
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 88, 293
AgsI TTSAA 3 cut(s) 95, 122, 207
AjnI CCWGG 2 cut(s) 193, 286
AluBI AGCT 2 cut(s) 224, 284
AluI AGCT 2 cut(s) 224, 284
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 148
BccI CCATC 2 cut(s) 221, 271
BciT130I CCWGG 2 cut(s) 195, 288
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 195, 288
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 195, 288
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 194, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 293
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 195, 288
BseDI CCNNGG 2 cut(s) 194, 238
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 88, 293
BseMII CTCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 88, 293
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 165, 256
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 194, 238
BssMI GATC 2 cut(s) 165, 256
Bst2UI CCWGG 2 cut(s) 195, 288
Bst4CI ACNGT 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 102, 129
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 2 cut(s) 168, 259
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 165, 256
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 195, 288
BstSCI CCNGG 2 cut(s) 193, 286
BstSFI CTRYAG 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 274
CviJI RGCY 5 cut(s) 45, 136, 224, 231, 284
CviKI_1 RGCY 5 cut(s) 45, 136, 224, 231, 284
DdeI CTNAG 2 cut(s) 102, 129
DpnI GATC 2 cut(s) 167, 258
DpnII GATC 2 cut(s) 165, 256
EaeI YGGCCR 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 193, 286
FbaI TGATCA 1 cut(s) 165
FokI GGATG 1 cut(s) 250
FspBI CTAG 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 231
HinfI GANTC 2 cut(s) 73, 178
Hpy188I TCNGA 3 cut(s) 72, 132, 221
Hpy188III TCNNGA 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 102, 129
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 165, 256
LmnI GCTCC 1 cut(s) 289
MaeI CTAG 1 cut(s) 305
MalI GATC 2 cut(s) 167, 258
MboI GATC 2 cut(s) 165, 256
MlsI TGGCCA 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 6 cut(s) 17, 23, 50, 109, 260, 314
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 195, 288
MvaI CCWGG 2 cut(s) 195, 288
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 165, 256
NlaIV GGNNCC 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 73
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 193, 286
PspGI CCWGG 2 cut(s) 193, 286
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 287
Sau3AI GATC 2 cut(s) 165, 256
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 195, 288
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 274
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 193, 286
TaaI ACNGT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.