Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008602.1

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Reverse (-)

43468 .. 44229

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008602.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgcgtcgtggagtcagtagtggagggggagggagttctttgggctatctttttggaggcggtgaaggtcagaatcccgccccaaaaaaggttgaaactcctaaggttcaggtggaggttgaacctactcagaagcctactgctgcggcaccacctgcggaagtgatcagtaaggagactccagcaggcgttcctgggaacacttcaaacaactacttccgagctgatggccagaaccgtggaaacttcctcacggatcgtccatccacaaaggtccattcagctcctggtgggggttcatctctagattacctgtttggaggtggtggccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.25

Weight (kDa)

9.1

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	4 cut(s)	60, 78, 146, 158
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	229, 328
AfiI	CCNNNNNNNGG	2 cut(s)	88, 293
AgsI	TTSAA	3 cut(s)	95, 122, 207
AjnI	CCWGG	2 cut(s)	193, 286
AluBI	AGCT	2 cut(s)	224, 284
AluI	AGCT	2 cut(s)	224, 284
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	229, 328
ApeKI	GCWGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	102
BalI	TGGCCA	2 cut(s)	231, 330
BanI	GGYRCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	221, 271
BciT130I	CCWGG	2 cut(s)	195, 288
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
Bme1390I	CCNGG	2 cut(s)	195, 288
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	195, 288
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	194, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 293
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	195, 288
BseDI	CCNNGG	2 cut(s)	194, 238
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	88, 293
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	231, 330
BshNI	GGYRCC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	88, 293
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	231, 330
Bsp143I	GATC	2 cut(s)	165, 256
BspACI	CCGC	4 cut(s)	60, 78, 146, 158
BspANI	GGCC	2 cut(s)	231, 330
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	194, 238
BssMI	GATC	2 cut(s)	165, 256
Bst2UI	CCWGG	2 cut(s)	195, 288
Bst4CI	ACNGT	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	102, 129
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	2 cut(s)	168, 259
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	165, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	195, 288
BstSCI	CCNGG	2 cut(s)	193, 286
BstV1I	GCAGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	231, 330
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	274
CviJI	RGCY	6 cut(s)	45, 136, 224, 231, 284, 330
CviKI_1	RGCY	6 cut(s)	45, 136, 224, 231, 284, 330
DdeI	CTNAG	2 cut(s)	102, 129
DpnI	GATC	2 cut(s)	167, 258
DpnII	GATC	2 cut(s)	165, 256
EaeI	YGGCCR	2 cut(s)	229, 328
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	193, 286
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	144, 147
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	231, 330
HinfI	GANTC	3 cut(s)	12, 73, 178
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	72, 132, 221
Hpy188III	TCNNGA	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	102, 129
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 256
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	305
MalI	GATC	2 cut(s)	167, 258
MboI	GATC	2 cut(s)	165, 256
MlsI	TGGCCA	2 cut(s)	231, 330
MluNI	TGGCCA	2 cut(s)	231, 330
MlyI	GAGTC	2 cut(s)	21, 172
MnlI	CCTC	6 cut(s)	17, 23, 50, 109, 260, 314
Mox20I	TGGCCA	2 cut(s)	231, 330
MscI	TGGCCA	2 cut(s)	231, 330
Msp20I	TGGCCA	2 cut(s)	231, 330
MspR9I	CCNGG	2 cut(s)	195, 288
MvaI	CCWGG	2 cut(s)	195, 288
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	165, 256
NlaIV	GGNNCC	1 cut(s)	150
PaqCI	CACCTGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	145, 148
PleI	GAGTC	2 cut(s)	20, 172
PpsI	GAGTC	2 cut(s)	20, 172
Psp6I	CCWGG	2 cut(s)	193, 286
PspGI	CCWGG	2 cut(s)	193, 286
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	287
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	2 cut(s)	165, 256
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	21, 172
ScrFI	CCNGG	2 cut(s)	195, 288
SinI	GGWCC	1 cut(s)	274
SsiI	CCGC	4 cut(s)	60, 78, 146, 158
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	193, 286
TaaI	ACNGT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.