Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Reverse (-)

74544306 .. 74545352

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG564200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCCGCGGAGTCAGCTGTGGTGGTGGACAAAGTTCATTGGGATACTTGTTTGGAGGTGGAGCAGAGGCTGTTCCAAACAACACTCGTTCTCTGAATAGGACTTCTTCTGCTAGCTCGATACCAATTGAAATGCAACCTCCAGCAGGCATTCCCACAAAAAGGGATGCAGTTGATAAGCAAATCCCAGCTGCAAACAATCCCACAAACACAATACCGTCTCCGAATAAGACGAGTGCTCCTGCTACAAATCCAATTGACAAGAATGTTCCAGCAGGCATTCAGAGCAATCCCACAAATAATTACTTGCGTTTGGATGGCCAGAACTGTGGCAACTTCATCACGGATCGACCATCTAGGAAGGTTCATTCAGCTCCGGGAGGTGGATCGTCCCTCGGATACTTGTTTGGCGGTAGTGATGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

14.48

Weight (kDa)

9.56

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	7, 9, 411
AclWI	GGATC	2 cut(s)	354, 394
AcoI	YGGCCR	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	146, 162, 383
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	4 cut(s)	18, 117, 191, 374
AluI	AGCT	4 cut(s)	18, 117, 191, 374
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	354, 394
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	4, 319
ApeKI	GCWGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	378
AsuNHI	GCTAGC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	311, 361, 413
BciVI	GTATCC	2 cut(s)	38, 392
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	114, 357
BfuI	GTATCC	2 cut(s)	38, 392
BisI	GCNGC	2 cut(s)	7, 192
BlsI	GCNGC	2 cut(s)	8, 193
Bme1390I	CCNGG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	7, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 162, 383
BseDI	CCNNGG	2 cut(s)	7, 394
BseGI	GGATG	2 cut(s)	172, 322
BseLI	CCNNNNNNNGG	3 cut(s)	146, 162, 383
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	6, 321
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	146, 162, 383
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	150, 279
BsnI	GGCC	2 cut(s)	6, 321
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	346, 386
BspACI	CCGC	3 cut(s)	7, 9, 411
BspANI	GGCC	2 cut(s)	6, 321
BspFNI	CGCG	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	354, 394
BssECI	CCNNGG	2 cut(s)	7, 394
BssMI	GATC	2 cut(s)	346, 386
Bst4CI	ACNGT	2 cut(s)	219, 329
BstC8I	GCNNGC	3 cut(s)	115, 148, 277
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	172, 322
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	349, 389
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	346, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 285
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuI	GTATCC	2 cut(s)	38, 392
BsuRI	GGCC	2 cut(s)	6, 321
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	172, 322
Cac8I	GCNNGC	3 cut(s)	115, 148, 277
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	10
CviJI	RGCY	7 cut(s)	6, 18, 71, 117, 191, 321, 374
CviKI_1	RGCY	7 cut(s)	6, 18, 71, 117, 191, 321, 374
DpnI	GATC	2 cut(s)	348, 388
DpnII	GATC	2 cut(s)	346, 386
EaeI	YGGCCR	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	7, 192
FokI	GGATG	2 cut(s)	179, 329
Fsp4HI	GCNGC	2 cut(s)	7, 192
FspBI	CTAG	2 cut(s)	114, 357
GluI	GCNGC	2 cut(s)	7, 192
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	6, 321
HapII	CCGG	1 cut(s)	377
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	96, 225, 285, 398
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	219, 329
HpyCH4V	TGCA	3 cut(s)	136, 170, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 285
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	346, 386
LmnI	GCTCC	3 cut(s)	62, 244, 379
LpnPI	CCDG	8 cut(s)	132, 156, 201, 255, 261, 285, 335, 390
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	114, 357
MalI	GATC	2 cut(s)	348, 388
MboI	GATC	2 cut(s)	346, 386
MboII	GAAGA	1 cut(s)	99
MfeI	CAATTG	2 cut(s)	126, 255
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	3 cut(s)	126, 255, 301
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	5 cut(s)	50, 61, 150, 374, 404
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	3 cut(s)	9, 18, 191
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	2 cut(s)	126, 255
Mva1269I	GAATGC	2 cut(s)	150, 279
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	15, 285
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	346, 386
NheI	GCTAGC	1 cut(s)	113
PctI	GAATGC	2 cut(s)	150, 279
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	8, 193
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	18, 191
SacII	CCGCGG	1 cut(s)	10
SatI	GCNGC	2 cut(s)	7, 192
Sau3AI	GATC	2 cut(s)	346, 386
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	8 cut(s)	20, 61, 119, 142, 193, 366, 376, 385
SfaNI	GCATC	1 cut(s)	157
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	126, 255, 301
SsiI	CCGC	3 cut(s)	7, 9, 411
SspMI	CTAG	2 cut(s)	114, 357
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	219, 329
TaqI	TCGA	2 cut(s)	119, 349
TasI	AATT	3 cut(s)	126, 255, 301
TauI	GCSGC	1 cut(s)	9
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	27, 328, 356
TspGWI	ACGGA	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	144
XspI	CTAG	2 cut(s)	114, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.