Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Reverse (-)

35534846 .. 35536347

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGCCGCGGAGTCAGCTGTGGTGGTGGACAAAGTTCCTTGGGATACTTGTTTGGAGGTGGAGCAGAGGCTGTTGCAAACAACACCCGTCCTCTGGATAGGAATGTCTCTACTAACTCTATACCAATTGAAATGCAACCTCCAGCAGGCATGCCCACAAAAAGGGATGGAGTAGATGCTAAGCAAGTCCCGGCTCCAAGCAAACCCACAAACACAACACCGTCTCCGAATAAGACTACTTCTCCTGCTACAAAACCAATTGACAAGAACATTCCGGCAGGCATTCATAGCAGTCCCACAAATAATTACTTGCGTTTGGATGGCCAGAACTGTGGCAACTTCATCACAGATCGACCATCTACGAAGGTTCATTCAGCTCCGGGAGGTGGATCTTCCCTCGGATACTTGTTTGGCGGTAGTGGTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

14.54

Weight (kDa)

9.64

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	7, 9, 414
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	322
AfiI	CCNNNNNNNGG	4 cut(s)	94, 146, 162, 386
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	2 cut(s)	18, 377
AluI	AGCT	2 cut(s)	18, 377
Alw26I	GTCTC	2 cut(s)	112, 228
AlwI	GGATC	1 cut(s)	397
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	4, 322
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	191, 381
BalI	TGGCCA	1 cut(s)	324
BccI	CCATC	3 cut(s)	161, 314, 364
BciVI	GTATCC	2 cut(s)	38, 395
BcnI	CCSGG	2 cut(s)	191, 381
BcoDI	GTCTC	2 cut(s)	112, 228
BfuI	GTATCC	2 cut(s)	38, 395
BisI	GCNGC	1 cut(s)	7
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	191, 381
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	191, 381
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	191, 381
BsaJI	CCNNGG	3 cut(s)	7, 39, 397
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 226, 238, 256
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 146, 162, 386
BseDI	CCNNGG	3 cut(s)	7, 39, 397
BseGI	GGATG	2 cut(s)	172, 325
BseLI	CCNNNNNNNGG	4 cut(s)	94, 146, 162, 386
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	6, 324
BsiSI	CCGG	3 cut(s)	191, 275, 380
BslFI	GGGAC	2 cut(s)	173, 279
BslI	CCNNNNNNNGG	4 cut(s)	94, 146, 162, 386
BsmAI	GTCTC	2 cut(s)	112, 228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	173, 279
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	6, 324
Bsp143I	GATC	2 cut(s)	349, 389
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	7, 9, 414
BspANI	GGCC	2 cut(s)	6, 324
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	7, 39, 397
BssMI	GATC	2 cut(s)	349, 389
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	222, 332
BstC8I	GCNNGC	3 cut(s)	148, 152, 280
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	172, 325
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	352, 392
BstMAI	GTCTC	2 cut(s)	112, 228
BstMBI	GATC	2 cut(s)	349, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 288
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	189, 379
BstUI	CGCG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	2 cut(s)	38, 395
BsuRI	GGCC	2 cut(s)	6, 324
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	172, 325
Cac8I	GCNNGC	3 cut(s)	148, 152, 280
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	10
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	6, 18, 71, 194, 324, 377
CviKI_1	RGCY	6 cut(s)	6, 18, 71, 194, 324, 377
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	351, 391
DpnII	GATC	2 cut(s)	349, 389
EaeI	YGGCCR	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	154
FaiI	YATR	3 cut(s)	122, 152, 288
FaqI	GGGAC	2 cut(s)	173, 279
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	179, 332
Fsp4HI	GCNGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	6, 324
HapII	CCGG	3 cut(s)	191, 275, 380
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	191, 275, 380
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	228, 401
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	222, 332
HpyCH4V	TGCA	2 cut(s)	77, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 288
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	349, 389
LmnI	GCTCC	3 cut(s)	62, 199, 382
LpnPI	CCDG	9 cut(s)	80, 132, 156, 204, 258, 264, 288, 338, 393
LweI	GCATC	1 cut(s)	166
MalI	GATC	2 cut(s)	351, 391
MboI	GATC	2 cut(s)	349, 389
MboII	GAAGA	1 cut(s)	384
MfeI	CAATTG	2 cut(s)	126, 258
MflI	RGATCY	1 cut(s)	389
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	3 cut(s)	126, 258, 304
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	6 cut(s)	50, 61, 102, 150, 377, 407
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	9, 18
MspI	CCGG	3 cut(s)	191, 275, 380
MspR9I	CCNGG	2 cut(s)	191, 381
MunI	CAATTG	2 cut(s)	126, 258
Mva1269I	GAATGC	1 cut(s)	282
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	15, 288
NciI	CCSGG	2 cut(s)	191, 381
NdeII	GATC	2 cut(s)	349, 389
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	10
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	349, 389
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	191, 381
SetI	ASST	6 cut(s)	20, 61, 142, 369, 379, 388
SfaNI	GCATC	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	3 cut(s)	126, 258, 304
SsiI	CCGC	3 cut(s)	7, 9, 414
StyD4I	CCNGG	2 cut(s)	189, 379
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	222, 332
TaqI	TCGA	1 cut(s)	352
TasI	AATT	3 cut(s)	126, 258, 304
TauI	GCSGC	1 cut(s)	9
TspDTI	ATGAA	3 cut(s)	275, 331, 359
XagI	CCTNNNNNAGG	1 cut(s)	144
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.