Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

33757293 .. 33759122

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1203200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCCCCAGCGCATGCGATTTGAATTTCAGTATAAATATAGAAAGTTGCCGCTTGCTTTACTACTCAGTGCTCTTGCGACTCAGATCTGAAGTCCAAACAACGCAACGCACCCACAGTATCCATTCATTCGAGGCGAGGAAGATGGGTCGTGGAGTCAGCAGCGGAGGTGGAGAGAGTTCTTTGGGCTACCTGTTTGGGGGTGGAGAAGAAACTCAGACTCCTGCCCCGAAAAAGGTTACAGCTCCTCAGAACCAGGCCCCGGTTCCAACCACTGAATCACCTGCTCAGAAGCCTACTGCTTCCGCACCACCTGCAGAAGTCAATAAGGAGATTCCTGCTGGCGTTCCAGGGAACACCTCAAACAACTATTTCCGAGCTGATGGCCAGAACTGCGGGAACTTCATCACAGATCGCCCATCAACAAAAGTGCACGCAGCTCCGGGTGGTGGATCATCCCTAGACTACCTGTTTGGAGCTGGTGGTGGTGGCGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.24

Weight (kDa)

8.48

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	292, 322
Acc36I	ACCTGC	2 cut(s)	292, 322
AciI	CCGC	5 cut(s)	52, 165, 306, 396, 492
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	4 cut(s)	199, 235, 262, 449
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	255, 349
AluBI	AGCT	4 cut(s)	245, 380, 440, 479
AluI	AGCT	4 cut(s)	245, 380, 440, 479
Alw21I	GWGCWC	2 cut(s)	75, 435
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	3 cut(s)	4, 258, 385
ApaI	GGGCCC	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	162, 437
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	4, 5, 259
AsuC2I	CCSGG	2 cut(s)	263, 444
AsuHPI	GGTGA	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	8, 435
BalI	TGGCCA	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	75, 435
BbvI	GCAGC	2 cut(s)	174, 449
BccI	CCATC	3 cut(s)	139, 377, 427
BciT130I	CCWGG	2 cut(s)	257, 351
BciVI	GTATCC	1 cut(s)	131
BcnI	CCSGG	2 cut(s)	263, 444
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	2 cut(s)	292, 322
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	4 cut(s)	52, 163, 438, 493
BlsI	GCNGC	4 cut(s)	53, 164, 439, 494
Bme1390I	CCNGG	4 cut(s)	257, 263, 351, 444
BmgT120I	GGNCC	3 cut(s)	4, 5, 259
BmiI	GGNNCC	4 cut(s)	6, 7, 261, 267
BmrFI	CCNGG	4 cut(s)	257, 263, 351, 444
BpuMI	CCSGG	2 cut(s)	263, 444
BsaJI	CCNNGG	2 cut(s)	261, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 235, 262, 449
BseBI	CCWGG	2 cut(s)	257, 351
BseDI	CCNNGG	2 cut(s)	261, 350
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	4 cut(s)	199, 235, 262, 449
BseMII	CTCAG	5 cut(s)	81, 97, 230, 263, 302
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	2 cut(s)	8, 435
BseXI	GCAGC	2 cut(s)	174, 449
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	3 cut(s)	6, 260, 387
BsiHKAI	GWGCWC	2 cut(s)	75, 435
BsiSI	CCGG	2 cut(s)	263, 443
BslI	CCNNNNNNNGG	4 cut(s)	199, 235, 262, 449
BsnI	GGCC	3 cut(s)	6, 260, 387
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 75, 435
Bsp143I	GATC	3 cut(s)	86, 412, 452
BspACI	CCGC	5 cut(s)	52, 165, 306, 396, 492
BspANI	GGCC	3 cut(s)	6, 260, 387
BspCNI	CTCAG	5 cut(s)	80, 96, 229, 262, 301
BspLI	GGNNCC	4 cut(s)	6, 7, 261, 267
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	2 cut(s)	292, 322
BspPI	GGATC	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	261, 350
BssMI	GATC	3 cut(s)	86, 412, 452
Bst2UI	CCWGG	2 cut(s)	257, 351
Bst4CI	ACNGT	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	16, 56, 343, 435
BstDEI	CTNAG	5 cut(s)	67, 83, 216, 249, 288
BstF5I	GGATG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	3 cut(s)	89, 415, 455
BstMBI	GATC	3 cut(s)	86, 412, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 393
BstNI	CCWGG	2 cut(s)	257, 351
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	4 cut(s)	255, 261, 349, 442
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	2 cut(s)	8, 435
BstV1I	GCAGC	2 cut(s)	174, 449
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	6, 260, 387
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	75, 273
BveI	ACCTGC	2 cut(s)	292, 322
Cac8I	GCNNGC	4 cut(s)	16, 56, 343, 435
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	4, 5, 259
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	9 cut(s)	6, 189, 245, 260, 295, 380, 387, 440, 479
CviKI_1	RGCY	9 cut(s)	6, 189, 245, 260, 295, 380, 387, 440, 479
DdeI	CTNAG	5 cut(s)	67, 83, 216, 249, 288
DpnI	GATC	3 cut(s)	88, 414, 454
DpnII	GATC	3 cut(s)	86, 412, 452
EaeI	YGGCCR	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	5, 259
EcoRII	CCWGG	2 cut(s)	255, 349
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	18
FaiI	YATR	3 cut(s)	16, 35, 41
FatI	CATG	1 cut(s)	14
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	52, 163, 438, 493
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	52, 163, 438, 493
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	4 cut(s)	52, 163, 438, 493
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	6, 260, 387
HapII	CCGG	2 cut(s)	263, 443
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	81, 156, 220, 278, 334
HpaII	CCGG	2 cut(s)	263, 443
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	6 cut(s)	86, 91, 219, 252, 291, 377
Hpy8I	GTNNAC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	317, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 393
HpyF3I	CTNAG	5 cut(s)	67, 83, 216, 249, 288
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	86, 412, 452
LmnI	GCTCC	3 cut(s)	250, 445, 476
Lsp1109I	GCAGC	2 cut(s)	174, 449
MaeI	CTAG	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	88, 414, 454
MboI	GATC	3 cut(s)	86, 412, 452
MboII	GAAGA	2 cut(s)	154, 221
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	3 cut(s)	8, 75, 435
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	1 cut(s)	25
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	3 cut(s)	75, 165, 214
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	5 cut(s)	127, 132, 161, 258, 370
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	2 cut(s)	263, 443
MspR9I	CCNGG	4 cut(s)	257, 263, 351, 444
MvaI	CCWGG	2 cut(s)	257, 351
MwoI	GCNNNNNNNGC	2 cut(s)	314, 393
NciI	CCSGG	2 cut(s)	263, 444
NdeII	GATC	3 cut(s)	86, 412, 452
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	4 cut(s)	6, 7, 261, 267
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PaqCI	CACCTGC	2 cut(s)	292, 322
PfeI	GAWTC	2 cut(s)	278, 334
PkrI	GCNGC	4 cut(s)	53, 164, 439, 494
PleI	GAGTC	3 cut(s)	75, 164, 214
PpsI	GAGTC	3 cut(s)	75, 164, 214
Psp6I	CCWGG	2 cut(s)	255, 349
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	255, 349
PspN4I	GGNNCC	4 cut(s)	6, 7, 261, 267
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 259
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	86
SatI	GCNGC	4 cut(s)	52, 163, 438, 493
Sau3AI	GATC	3 cut(s)	86, 412, 452
Sau96I	GGNCC	3 cut(s)	4, 5, 259
SchI	GAGTC	3 cut(s)	75, 165, 214
ScrFI	CCNGG	4 cut(s)	257, 263, 351, 444
SduI	GDGCHC	3 cut(s)	8, 75, 435
SfcI	CTRYAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	5 cut(s)	52, 165, 306, 396, 492
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	255, 261, 349, 442
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	25
TauI	GCSGC	2 cut(s)	54, 495
TfiI	GAWTC	2 cut(s)	278, 334
TscAI	CASTG	2 cut(s)	75, 280
TseI	GCWGC	2 cut(s)	162, 437
TspDTI	ATGAA	2 cut(s)	117, 394
TspRI	CASTG	2 cut(s)	75, 280
VneI	GTGCAC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.