SPIRAL1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69230 AT1G69230 |
| fragaria_vesca | FvH4_5g13660 FvH4_6g46690 |
| malus_domestica | MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1 |
| prunus_persica | Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1 |
| pyrus_communis | pycom06g18110 pycom17g06150 |
| rosa_chinensis | RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301 |
| rosa_laevigata | RLG00000005059 RLG00000021539 |
| rosa_multiflora | Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00270590 |
| rosa_rugosa | Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300 |
| rosa_samantha | Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500 |
| rosa_wichuraiana | Rw2G048400 Rw2G048550 Rw7G004750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 11 |
| AcoI | YGGCCR | 2 cut(s) | 26, 32 |
| AcuI | CTGAAG | 1 cut(s) | 150 |
| AfaI | GTAC | 2 cut(s) | 15, 72 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 88 |
| AflIII | ACRYGT | 2 cut(s) | 85, 137 |
| AgsI | TTSAA | 2 cut(s) | 61, 121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 22 |
| AoxI | GGCC | 2 cut(s) | 26, 32 |
| BalI | TGGCCA | 1 cut(s) | 28 |
| BceAI | ACGGC | 1 cut(s) | 47 |
| BmsI | GCATC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 29 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 88 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| BseDI | CCNNGG | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BshFI | GGCC | 2 cut(s) | 28, 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BsmI | GAATGC | 2 cut(s) | 46, 67 |
| BsnI | GGCC | 2 cut(s) | 28, 34 |
| Bsp143I | GATC | 1 cut(s) | 76 |
| BspACI | CCGC | 1 cut(s) | 11 |
| BspANI | GGCC | 2 cut(s) | 28, 34 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 29 |
| BssMI | GATC | 1 cut(s) | 76 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 70 |
| BstDSI | CCRYGG | 1 cut(s) | 29 |
| BstKTI | GATC | 1 cut(s) | 79 |
| BstMBI | GATC | 1 cut(s) | 76 |
| BstNSI | RCATGY | 2 cut(s) | 89, 141 |
| BsuRI | GGCC | 2 cut(s) | 28, 34 |
| BtgI | CCRYGG | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 1 cut(s) | 66 |
| CaiI | CAGNNNCTG | 1 cut(s) | 22 |
| Csp6I | GTAC | 2 cut(s) | 14, 71 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 18, 53, 55, 90 |
| CviAII | CATG | 2 cut(s) | 86, 138 |
| CviJI | RGCY | 3 cut(s) | 28, 34, 95 |
| CviKI_1 | RGCY | 3 cut(s) | 28, 34, 95 |
| CviQI | GTAC | 2 cut(s) | 14, 71 |
| DpnI | GATC | 1 cut(s) | 78 |
| DpnII | GATC | 1 cut(s) | 76 |
| EaeI | YGGCCR | 2 cut(s) | 26, 32 |
| Eco57I | CTGAAG | 1 cut(s) | 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 48 |
| FaeI | CATG | 2 cut(s) | 89, 141 |
| FaiI | YATR | 5 cut(s) | 44, 56, 87, 126, 139 |
| FatI | CATG | 2 cut(s) | 85, 137 |
| HaeIII | GGCC | 2 cut(s) | 28, 34 |
| Hin1II | CATG | 2 cut(s) | 89, 141 |
| Hpy188I | TCNGA | 1 cut(s) | 83 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 70 |
| HpyCH4V | TGCA | 2 cut(s) | 46, 166 |
| Hsp92II | CATG | 2 cut(s) | 89, 141 |
| Kzo9I | GATC | 1 cut(s) | 76 |
| LpnPI | CCDG | 3 cut(s) | 2, 113, 170 |
| LweI | GCATC | 1 cut(s) | 153 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 1 cut(s) | 78 |
| MboI | GATC | 1 cut(s) | 76 |
| MlsI | TGGCCA | 1 cut(s) | 28 |
| MluNI | TGGCCA | 1 cut(s) | 28 |
| MmeI | TCCRAC | 1 cut(s) | 106 |
| MnlI | CCTC | 3 cut(s) | 138, 164, 172 |
| Mox20I | TGGCCA | 1 cut(s) | 28 |
| Mph1103I | ATGCAT | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 28 |
| Msp20I | TGGCCA | 1 cut(s) | 28 |
| Mva1269I | GAATGC | 2 cut(s) | 46, 67 |
| NdeII | GATC | 1 cut(s) | 76 |
| NlaIII | CATG | 2 cut(s) | 89, 141 |
| NmuCI | GTSAC | 1 cut(s) | 133 |
| NsiI | ATGCAT | 1 cut(s) | 48 |
| NspI | RCATGY | 2 cut(s) | 89, 141 |
| PciI | ACATGT | 2 cut(s) | 85, 137 |
| PctI | GAATGC | 2 cut(s) | 46, 67 |
| PscI | ACATGT | 2 cut(s) | 85, 137 |
| PstNI | CAGNNNCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 15, 72 |
| RsaNI | GTAC | 2 cut(s) | 14, 71 |
| Sau3AI | GATC | 1 cut(s) | 76 |
| SfaNI | GCATC | 1 cut(s) | 153 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| SsiI | CCGC | 1 cut(s) | 11 |
| TaaI | ACNGT | 2 cut(s) | 24, 70 |
| TatI | WGTACW | 1 cut(s) | 70 |
| TscAI | CASTG | 1 cut(s) | 73 |
| TseFI | GTSAC | 1 cut(s) | 133 |
| Tsp45I | GTSAC | 1 cut(s) | 133 |
| TspRI | CASTG | 1 cut(s) | 73 |
| XceI | RCATGY | 2 cut(s) | 89, 141 |
| Zsp2I | ATGCAT | 1 cut(s) | 48 |