AT1G71160

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008224
Physical Location & Seq
Reverse (-)
26828701 .. 26830208
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71160.1

Sequence Viewer

Length: 1383 bp
ATGGAATCGAGCTTTCATTTCATCAATGAAGCTCTCCTTATCACTCAGACCTTTATCACTTTTCACCAATTCCTGGTAGCATCAGCCTGTGTTCTCATAGCTGTCTTTGGTTACTATTTCTTCAAACCAAGATGTATTATATACCTCATTGACTTCTCATGTTATCAACCTCCTGACTTCTTGCGAGCTCCGGTCTCTAATTTCATTGAGCATCTTACCATTTCCGGTGTTTTTGATCAAGAAAGTCTTGATCTCCAGCAGAAGATTTTAGAGCGATCAGGGATTAGTGATGACGCGAGCGTGCCTGCGACAGTCCATGAGATTCCACCAAACGCTTCTATCTCTGCAGCTAGAGAAGAAACTCATGAGATCCTCTTCGCTATTGTCCAAGATCTTTTCTCAAAGCATGAGATAGATCCAAAGAGTATTGACATCCTTGTGTCTAACTGCAGCCTATTCTGTCCTTCTCCATCCATAACTTCTATGATCATTAACAAGTTTGGCATGAGGAGTGACATAAAGAGCTTCAGTTTGAGCGGTATGGGCTGCAGCGCCGGGATTCTTTCGGTTAATCTCGTAAAAGATCTTATGAAGATTCATGGTGATTCTTTGGCCCTAGTGTTGAGTATGGAAGCTGTTAGTCCAAATGGTTACAGAGGGAAGTGTAAGTCGATGCTCATTGCCAACACTATCTTCAGAATGGGTGGGGCTGCGATTCTTCTTTCCAATAGGAAGCAAGATTCGCATAAGGCGAAATACAAACTCCAGCATATTATCAGAACTCATGTTGGTTCAGACACTGAATCGTACGAGAGTGTAATGCAGCAAGTTGATGAAGAAGGAAAAGTGGGAGTAGCATTGTCCAAGCAGCTTGTGAGGGTAGCATCAAAGGCCTTAAAGATCAACGTGGTGCAGTTAGGCCCTCGAGTGCTACCTTATTCAGAGCAGCTCAAATACATAATCTCATTCATCCAAAGAAAATGGGGAATGCACAAGGAGATATACACACCAAACTTCAAGAAAGCTTTTGAGCATTTCTGTATACATGCCGGAGGAAGGGCGATAATTGAAGGCGTGGAGAAGCATCTGAAGCTGGACAAGGAAGACGTAGAAGCTTCAAGGTCAACTCTATATCGTTATGGGAACACATCTTCGTCTTCGTTGTGGTATGAGCTGCAATACCTGGAAGCAAAAGGTAGAATGAAAATGGGAGATAAAGTATGGCAGATTGGGTTTGGAAGTGGCTTTAAGGCTAACAGTGCTGTCTGGAAATGCATCTCCGAGATCGATTCAAGAGGCAGGAATGCATGGTCTGATCGAATCCATTTGTATCCTGTCTGTGGAGATACTTCAAGTGCATTGAAGACAGAGCTTCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

460

Amino Acids

51.5

Weight (kDa)

8.39

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 40 - 328 3e-126 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 344 - 424 3e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 346 - 419 3.9e-12 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 537
AccI GTMKAC 1 cut(s) 1042
AccII CGCG 1 cut(s) 296
AciI CCGC 1 cut(s) 537
AclWI GGATC 2 cut(s) 364, 410
AcuI CTGAAG 3 cut(s) 511, 679, 1109
AfaI GTAC 1 cut(s) 809
AfiI CCNNNNNNNGG 3 cut(s) 73, 1056, 1340
AgsI TTSAA 7 cut(s) 124, 1018, 1070, 1119, 1293, 1353, 1363
AjnI CCWGG 2 cut(s) 72, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 2 cut(s) 364, 410
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 924
AoxI GGCC 3 cut(s) 612, 891, 919
ApeKI GCWGC 9 cut(s) 347, 450, 546, 549, 710, 823, 868, 946, 1174
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 2 cut(s) 613, 920
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 56, 614
AvaI CYCGRG 1 cut(s) 924
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 3 cut(s) 1110, 1149, 1370
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 9 cut(s) 359, 462, 533, 561, 697, 835, 880, 958, 1161
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 2 cut(s) 74, 1184
BciVI GTATCC 1 cut(s) 1341
BclI TGATCA 2 cut(s) 235, 486
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 351, 617
BfmI CTRYAG 3 cut(s) 345, 448, 547
BfoI RGCGCY 1 cut(s) 555
BfuI GTATCC 1 cut(s) 1341
BglII AGATCT 2 cut(s) 391, 583
BisI GCNGC 9 cut(s) 348, 451, 547, 550, 711, 824, 869, 947, 1175
BlsI GCNGC 9 cut(s) 349, 452, 548, 551, 712, 825, 870, 948, 1176
Bme1390I CCNGG 3 cut(s) 74, 556, 1184
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 2 cut(s) 613, 920
BmrFI CCNGG 3 cut(s) 74, 556, 1184
BmsI GCATC 6 cut(s) 89, 220, 663, 893, 1093, 1284
BpiI GAAGAC 3 cut(s) 1110, 1149, 1370
BpmI CTGGAG 2 cut(s) 239, 749
BpuMI CCSGG 1 cut(s) 556
Bsa29I ATCGAT 1 cut(s) 1287
BsaI GGTCTC 1 cut(s) 199
BsaWI WCCGGW 2 cut(s) 190, 224
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 1056, 1340
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 74, 1184
BseCI ATCGAT 1 cut(s) 1287
BseGI GGATG 3 cut(s) 432, 470, 969
BseLI CCNNNNNNNGG 3 cut(s) 73, 1056, 1340
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 523
BseXI GCAGC 9 cut(s) 359, 462, 533, 561, 697, 835, 880, 958, 1161
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 614, 893, 921
BshVI ATCGAT 1 cut(s) 1287
BsiHKAI GWGCWC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 4 cut(s) 191, 225, 555, 1050
BsiWI CGTACG 1 cut(s) 807
BslI CCNNNNNNNGG 3 cut(s) 73, 1056, 1340
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 2 cut(s) 993, 1309
BsnI GGCC 3 cut(s) 614, 893, 921
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 924
Bsp1286I GDGCHC 1 cut(s) 190
BspACI CCGC 1 cut(s) 537
BspANI GGCC 3 cut(s) 614, 893, 921
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 1287
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 364
BspMAI CTGCAG 3 cut(s) 349, 452, 551
BspPI GGATC 2 cut(s) 364, 410
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 678
BssNAI GTATAC 1 cut(s) 1043
Bst1107I GTATAC 1 cut(s) 1043
Bst2UI CCWGG 2 cut(s) 74, 1184
Bst4CI ACNGT 2 cut(s) 313, 1259
Bst6I CTCTTC 1 cut(s) 380
BstC8I GCNNGC 4 cut(s) 186, 298, 302, 306
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 432, 470, 969
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 1 cut(s) 554
BstMAI GTCTC 1 cut(s) 199
BstMWI GCNNNNNNNGC 5 cut(s) 543, 742, 890, 1090, 1259
BstNI CCWGG 2 cut(s) 74, 1184
BstNSI RCATGY 1 cut(s) 1049
BstSCI CCNGG 3 cut(s) 72, 554, 1182
BstSFI CTRYAG 3 cut(s) 345, 448, 547
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 9 cut(s) 359, 462, 533, 561, 697, 835, 880, 958, 1161
BstV2I GAAGAC 3 cut(s) 1110, 1149, 1370
BstX2I RGATCY 4 cut(s) 369, 391, 415, 583
BstYI RGATCY 4 cut(s) 369, 391, 415, 583
BstZ17I GTATAC 1 cut(s) 1043
Bsu15I ATCGAT 1 cut(s) 1287
BsuI GTATCC 1 cut(s) 1341
BsuRI GGCC 3 cut(s) 614, 893, 921
BsuTUI ATCGAT 1 cut(s) 1287
BtsCI GGATG 3 cut(s) 432, 470, 969
BtsIMutI CAGTG 2 cut(s) 798, 1264
Cac8I GCNNGC 4 cut(s) 186, 298, 302, 306
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 554
Cfr13I GGNCC 2 cut(s) 613, 920
ClaI ATCGAT 1 cut(s) 1287
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 808
CviAII CATG 9 cut(s) 159, 317, 365, 407, 505, 599, 785, 1046, 1308
CviQI GTAC 1 cut(s) 808
DdeI CTNAG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 188
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 3 cut(s) 511, 679, 1109
Eco88I CYCGRG 1 cut(s) 924
EcoICRI GAGCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 72, 1182
EcoT22I ATGCAT 2 cut(s) 1277, 1309
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 9 cut(s) 162, 320, 368, 410, 508, 602, 788, 1049, 1311
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 231, 263
FatI CATG 9 cut(s) 158, 316, 364, 406, 504, 598, 784, 1045, 1307
FbaI TGATCA 2 cut(s) 235, 486
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 9 cut(s) 348, 451, 547, 550, 711, 824, 869, 947, 1175
FokI GGATG 3 cut(s) 419, 457, 956
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 9 cut(s) 348, 451, 547, 550, 711, 824, 869, 947, 1175
FspBI CTAG 2 cut(s) 351, 617
GlaI GCGC 1 cut(s) 553
GluI GCNGC 9 cut(s) 348, 451, 547, 550, 711, 824, 869, 947, 1175
GsuI CTGGAG 2 cut(s) 239, 749
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 3 cut(s) 614, 893, 921
HapII CCGG 4 cut(s) 191, 225, 555, 1050
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 554
Hin1II CATG 9 cut(s) 162, 320, 368, 410, 508, 602, 788, 1049, 1311
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 2 cut(s) 1023, 1113
HpaII CCGG 4 cut(s) 191, 225, 555, 1050
HphI GGTGA 2 cut(s) 56, 614
Hpy166II GTNNAC 2 cut(s) 1043, 1125
Hpy188I TCNGA 8 cut(s) 48, 698, 779, 796, 943, 1089, 1282, 1315
Hpy188III TCNNGA 8 cut(s) 173, 239, 248, 365, 1018, 1267, 1293, 1380
Hpy8I GTNNAC 2 cut(s) 1043, 1125
HpyAV CCTTC 4 cut(s) 474, 833, 1050, 1064
HpyCH4III ACNGT 2 cut(s) 313, 1259
HpyCH4IV ACGT 2 cut(s) 906, 1107
HpyF10VI GCNNNNNNNGC 5 cut(s) 543, 742, 890, 1090, 1259
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 2 cut(s) 906, 1107
Hsp92II CATG 9 cut(s) 162, 320, 368, 410, 508, 602, 788, 1049, 1311
HspAI GCGC 1 cut(s) 552
Ksp22I TGATCA 2 cut(s) 235, 486
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 9 cut(s) 359, 462, 533, 561, 697, 835, 880, 958, 1161
LweI GCATC 6 cut(s) 89, 220, 663, 893, 1093, 1284
MaeI CTAG 2 cut(s) 351, 617
MaeII ACGT 2 cut(s) 906, 1107
MaeIII GTNAC 3 cut(s) 110, 512, 650
MbiI CCGCTC 1 cut(s) 537
MflI RGATCY 4 cut(s) 369, 391, 415, 583
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 68, 199, 1065
MnlI CCTC 9 cut(s) 155, 180, 383, 501, 650, 870, 933, 1046, 1289
Mph1103I ATGCAT 2 cut(s) 1277, 1309
MseI TTAA 4 cut(s) 492, 570, 896, 1248
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 4 cut(s) 191, 225, 555, 1050
MspR9I CCNGG 3 cut(s) 74, 556, 1184
Mva1269I GAATGC 2 cut(s) 993, 1309
MvaI CCWGG 2 cut(s) 74, 1184
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 5 cut(s) 543, 742, 890, 1090, 1259
NciI CCSGG 1 cut(s) 556
NlaIII CATG 9 cut(s) 162, 320, 368, 410, 508, 602, 788, 1049, 1311
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 2 cut(s) 1277, 1309
NspI RCATGY 1 cut(s) 1049
PaeR7I CTCGAG 1 cut(s) 924
PagI TCATGA 1 cut(s) 364
PceI AGGCCT 1 cut(s) 893
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PctI GAATGC 2 cut(s) 993, 1309
Pfl23II CGTACG 1 cut(s) 807
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 9 cut(s) 349, 452, 548, 551, 712, 825, 870, 948, 1176
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 72, 1182
PspGI CCWGG 2 cut(s) 72, 1182
PspLI CGTACG 1 cut(s) 807
PspPI GGNCC 2 cut(s) 613, 920
PspXI VCTCGAGB 1 cut(s) 924
PstI CTGCAG 3 cut(s) 349, 452, 551
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 4 cut(s) 369, 391, 415, 583
RsaI GTAC 1 cut(s) 809
RsaNI GTAC 1 cut(s) 808
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 4 cut(s) 492, 570, 896, 1248
SatI GCNGC 9 cut(s) 348, 451, 547, 550, 711, 824, 869, 947, 1175
Sau96I GGNCC 2 cut(s) 613, 920
ScrFI CCNGG 3 cut(s) 74, 556, 1184
SduI GDGCHC 1 cut(s) 190
SfaNI GCATC 6 cut(s) 89, 220, 663, 893, 1093, 1284
SfcI CTRYAG 3 cut(s) 345, 448, 547
Sfr274I CTCGAG 1 cut(s) 924
SlaI CTCGAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 924
SmoI CTYRAG 1 cut(s) 924
Sse9I AATT 3 cut(s) 68, 199, 1065
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 1 cut(s) 537
SspMI CTAG 2 cut(s) 351, 617
SstI GAGCTC 1 cut(s) 190
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 3 cut(s) 72, 554, 1182
TaaI ACNGT 2 cut(s) 313, 1259
TaiI ACGT 2 cut(s) 909, 1110
TaqI TCGA 5 cut(s) 8, 671, 925, 1287, 1318
TasI AATT 3 cut(s) 68, 199, 1065
Tru1I TTAA 4 cut(s) 492, 570, 896, 1248
Tru9I TTAA 4 cut(s) 492, 570, 896, 1248
TscAI CASTG 2 cut(s) 805, 1264
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 9 cut(s) 347, 450, 546, 549, 710, 823, 868, 946, 1174
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 9 cut(s) 5, 10, 42, 193, 587, 605, 849, 958, 1217
TspRI CASTG 2 cut(s) 805, 1264
Van91I CCANNNNNTGG 1 cut(s) 73
XceI RCATGY 1 cut(s) 1049
XhoI CTCGAG 1 cut(s) 924
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 2 cut(s) 351, 617
Zsp2I ATGCAT 2 cut(s) 1277, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.