Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Reverse (-)

46449693 .. 46451300

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G569800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAGACTACATTGCTTAGGTCTTTCTCATTTCTCGCTGCAGAATTATCTCCAATCTTCCTCACCAATTTCTTAGCTACAACTGTTTTGGTCATTGCCGCTGCTGTCTATTTTCATTTCAGATCCAAGGGTATATACCTTATAGACTTCACCTGCTATCTGCCTCCTGATAGCTTGCGCGTTCCAACATCGAATTTCATCGAGCACATTGAAATATCTGGAATGCATGACAGAGAAAGTGTTGATTTTCAAACGAAGGTGTTGGAAAGATCAGGAATTGGAGCAGAGAGTTGCATGCCTATTACAGTGCATGAGATCCCACCTTATTCCTCTTTAAAAGCTACTAGAAATGAAACTGAAACGGTTCTCTTCACTATTGTCAAAGACCTCCTTTCCAAGCACAAAATAAATCCAAAAAGTATCGACATTCTTGTGTCAAACTGTAGCCTTTTCTCCCCCACACCGTCCATTACATCTATGGTCATAAACAAGTTTGGATTCCGAAGCAACATAAAGAGCATCAACCTCAGTGGAATGGGTTGCAGTGCCGGAATCTTGTCGATAAGTTTGGCGAAAGATCTTTTAAAAGTTCACAAGAACTGCTTGGCCTTAGTTCTCAGCATGGAAGCTGTAACTCCCAATGGCTATGGGGGTAGAATGAAATCCATGCTTCTTCCCAACATTTTGTTTCGGATGGGAGGAGCTGCTATCCTATTATCGAACAGGAAGCAAGATAAGCGAATAGCTAAGTATGAGCTCCAGCATCTTGTCCGAACCCACATTGGTTCAGATGATGAGGCATACCAATCTGTTTTCCAGCAGCCTGATGAAGCAGGGCATGTTGGGGTCTCGTTATCACGAGCACTTTTACGTGTGGCAACAAAGGCTCTAAGAAGTAACATGTCAGAGTTGGGGCCACTTGTGCTACCATATTCAGTGCAGCTCCGATACGCATGGTCAGTGATATGCATGAAACTTTGGTTTCTACCAAGCAAAAAGGGAATTTATGTGCCGAATTTCAAGAAGGCGCTTGAGCATTTCTGTATACATGCTGGTGGAAGGGCAGTGATTGATGGCATAGAAGACAGTCTGAAGCTGCACAAGGAGGATGGAGAAGCTTCAAGGATGACATTACACAGATTTGGCAATACTTCATCTTCTTCAGTTTGGTATGAGCTCTGCTATTTGGAGGCAAAAGGAAGGTTGAAGAAAGGAAACCGAGTTTGGCAAATAGCCTTTGGAAGTGGTTTCAAGTGTAACAGCGCAATTTGGAAGTGCATTTCAGATATTGATCCAACAAAAAGAAATGCATGGTCTGATTGCATCCATTTCTATCCTACTCAGAATGACACCCTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

454

Amino Acids

50.57

Weight (kDa)

9.16

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	1045
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	117, 310, 1286
AcsI	RAATTY	3 cut(s)	193, 1002, 1015
AcuI	CTGAAG	2 cut(s)	1112, 1146
AflIII	ACRYGT	2 cut(s)	871, 900
AgsI	TTSAA	6 cut(s)	212, 251, 1021, 1122, 1207, 1252
AjuI	GAANNNNNNNTTGG	2 cut(s)	1207, 1239
Alw21I	GWGCWC	4 cut(s)	207, 759, 865, 1179
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	3 cut(s)	117, 310, 1286
AoxI	GGCC	2 cut(s)	606, 914
ApeKI	GCWGC	6 cut(s)	38, 101, 704, 820, 940, 1096
ApoI	RAATTY	3 cut(s)	193, 1002, 1015
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	3 cut(s)	180, 1030, 1265
AspS9I	GGNCC	1 cut(s)	914
AsuHPI	GGTGA	2 cut(s)	55, 142
BanII	GRGCYC	2 cut(s)	759, 1179
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	1089
Bbv12I	GWGCWC	4 cut(s)	207, 759, 865, 1179
BbvI	GCAGC	6 cut(s)	25, 88, 691, 832, 952, 1083
BccI	CCATC	3 cut(s)	688, 1067, 1103
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	39, 442
BfoI	RGCGCY	1 cut(s)	1031
BfuAI	ACCTGC	1 cut(s)	161
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	7 cut(s)	39, 99, 102, 705, 821, 941, 1097
BlsI	GCNGC	7 cut(s)	40, 100, 103, 706, 822, 942, 1098
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	1 cut(s)	915
BmsI	GCATC	3 cut(s)	528, 772, 1332
BpiI	GAAGAC	1 cut(s)	1089
BpmI	CTGGAG	1 cut(s)	743
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	1052
BsaAI	YACGTR	1 cut(s)	872
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	11, 93
Bse8I	GATNNNNATC	1 cut(s)	1290
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	4 cut(s)	699, 1114, 1131, 1323
BseJI	GATNNNNATC	1 cut(s)	1290
BseMI	GCAATG	2 cut(s)	11, 93
BseMII	CTCAG	3 cut(s)	541, 631, 1355
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	6 cut(s)	25, 88, 691, 832, 952, 1083
BsgI	GTGCAG	2 cut(s)	959, 1082
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	608, 916
BsiHKAI	GWGCWC	4 cut(s)	207, 759, 865, 1179
BsiSI	CCGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	608, 916
Bso31I	GGTCTC	1 cut(s)	853
Bsp1286I	GDGCHC	4 cut(s)	207, 759, 865, 1179
Bsp143I	GATC	5 cut(s)	122, 269, 315, 577, 1291
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	608, 916
BspCNI	CTCAG	3 cut(s)	540, 630, 1354
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	915
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	117, 310, 1286
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	2 cut(s)	11, 93
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	5 cut(s)	122, 269, 315, 577, 1291
BssNAI	GTATAC	1 cut(s)	1046
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	1046
Bst2BI	CACGAG	1 cut(s)	858
Bst4CI	ACNGT	6 cut(s)	85, 307, 364, 443, 465, 1088
Bst6I	CTCTTC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	872
BstC8I	GCNNGC	2 cut(s)	176, 296
BstDEI	CTNAG	8 cut(s)	17, 73, 527, 610, 617, 747, 890, 1341
BstF5I	GGATG	4 cut(s)	699, 1114, 1131, 1323
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	1031
BstHHI	GCGC	3 cut(s)	180, 1030, 1265
BstKTI	GATC	5 cut(s)	125, 272, 318, 580, 1294
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	5 cut(s)	122, 269, 315, 577, 1291
BstMWI	GCNNNNNNNGC	3 cut(s)	736, 884, 922
BstNSI	RCATGY	4 cut(s)	298, 842, 904, 1052
BstSFI	CTRYAG	2 cut(s)	39, 442
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	6 cut(s)	25, 88, 691, 832, 952, 1083
BstV2I	GAAGAC	1 cut(s)	1089
BstX2I	RGATCY	3 cut(s)	122, 315, 577
BstYI	RGATCY	3 cut(s)	122, 315, 577
BstZ17I	GTATAC	1 cut(s)	1046
BsuRI	GGCC	2 cut(s)	608, 916
BtsCI	GGATG	4 cut(s)	699, 1114, 1131, 1323
BtsI	GCAGTG	2 cut(s)	550, 1071
BtsIMutI	CAGTG	6 cut(s)	312, 535, 550, 942, 966, 1071
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	176, 296
CfoI	GCGC	3 cut(s)	180, 1030, 1265
Cfr13I	GGNCC	1 cut(s)	914
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
DdeI	CTNAG	8 cut(s)	17, 73, 527, 610, 617, 747, 890, 1341
DpnI	GATC	5 cut(s)	124, 271, 317, 579, 1293
DpnII	GATC	5 cut(s)	122, 269, 315, 577, 1291
DraI	TTTAAA	2 cut(s)	336, 585
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Ecl136II	GAGCTC	2 cut(s)	757, 1177
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	759, 1179
Eco31I	GGTCTC	1 cut(s)	853
Eco53kI	GAGCTC	2 cut(s)	757, 1177
Eco57I	CTGAAG	2 cut(s)	1112, 1146
EcoICRI	GAGCTC	2 cut(s)	757, 1177
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	3 cut(s)	228, 971, 1312
EcoT38I	GRGCYC	2 cut(s)	759, 1179
ErhI	CCWWGG	1 cut(s)	126
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 587, 619
FblI	GTMKAC	1 cut(s)	1045
Fnu4HI	GCNGC	7 cut(s)	39, 99, 102, 705, 821, 941, 1097
FokI	GGATG	4 cut(s)	706, 1121, 1138, 1310
FriOI	GRGCYC	2 cut(s)	759, 1179
Fsp4HI	GCNGC	7 cut(s)	39, 99, 102, 705, 821, 941, 1097
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	3 cut(s)	179, 1029, 1264
GluI	GCNGC	7 cut(s)	39, 99, 102, 705, 821, 941, 1097
GsuI	CTGGAG	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	1031
HaeIII	GGCC	2 cut(s)	608, 916
HapII	CCGG	1 cut(s)	549
HhaI	GCGC	3 cut(s)	180, 1030, 1265
Hin6I	GCGC	3 cut(s)	178, 1028, 1263
HinP1I	GCGC	3 cut(s)	178, 1028, 1263
HindIII	AAGCTT	1 cut(s)	1116
HinfI	GANTC	2 cut(s)	498, 552
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	2 cut(s)	55, 142
Hpy166II	GTNNAC	2 cut(s)	592, 1046
Hpy188III	TCNNGA	5 cut(s)	167, 219, 273, 858, 1021
Hpy8I	GTNNAC	2 cut(s)	592, 1046
HpyAV	CCTTC	4 cut(s)	250, 1018, 1053, 1194
HpyCH4III	ACNGT	6 cut(s)	85, 307, 364, 443, 465, 1088
HpyCH4IV	ACGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	736, 884, 922
HpyF3I	CTNAG	8 cut(s)	17, 73, 527, 610, 617, 747, 890, 1341
HpySE526I	ACGT	1 cut(s)	871
HspAI	GCGC	3 cut(s)	178, 1028, 1263
Kzo9I	GATC	5 cut(s)	122, 269, 315, 577, 1291
LmnI	GCTCC	4 cut(s)	281, 701, 762, 948
Lsp1109I	GCAGC	6 cut(s)	25, 88, 691, 832, 952, 1083
LweI	GCATC	3 cut(s)	528, 772, 1332
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	3 cut(s)	631, 896, 1256
MalI	GATC	5 cut(s)	124, 271, 317, 579, 1293
MboI	GATC	5 cut(s)	122, 269, 315, 577, 1291
MboII	GAAGA	7 cut(s)	49, 361, 665, 1094, 1149, 1152, 1219
MflI	RGATCY	3 cut(s)	122, 315, 577
MhlI	GDGCHC	4 cut(s)	207, 759, 865, 1179
MluCI	AATT	7 cut(s)	44, 67, 193, 276, 1002, 1015, 1266
MmeI	TCCRAC	3 cut(s)	209, 243, 1319
MnlI	CCTC	9 cut(s)	71, 174, 340, 398, 536, 692, 790, 1099, 1183
Mph1103I	ATGCAT	3 cut(s)	228, 971, 1312
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	3 cut(s)	335, 584, 1356
MslI	CAYNNNNRTG	2 cut(s)	431, 1053
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	228
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	736, 884, 922
NdeII	GATC	5 cut(s)	122, 269, 315, 577, 1291
NlaIV	GGNNCC	1 cut(s)	915
NsiI	ATGCAT	3 cut(s)	228, 971, 1312
NspI	RCATGY	4 cut(s)	298, 842, 904, 1052
PaeI	GCATGC	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	161
PciI	ACATGT	1 cut(s)	900
PctI	GAATGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	498, 552
PkrI	GCNGC	7 cut(s)	40, 100, 103, 706, 822, 942, 1098
Ppu21I	YACGTR	1 cut(s)	872
PscI	ACATGT	1 cut(s)	900
Psp124BI	GAGCTC	2 cut(s)	759, 1179
PspN4I	GGNNCC	1 cut(s)	915
PspPI	GGNCC	1 cut(s)	914
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	122, 315, 577
RseI	CAYNNNNRTG	2 cut(s)	431, 1053
SacI	GAGCTC	2 cut(s)	759, 1179
SaqAI	TTAA	3 cut(s)	335, 584, 1356
SatI	GCNGC	7 cut(s)	39, 99, 102, 705, 821, 941, 1097
Sau3AI	GATC	5 cut(s)	122, 269, 315, 577, 1291
Sau96I	GGNCC	1 cut(s)	914
SduI	GDGCHC	4 cut(s)	207, 759, 865, 1179
SfaNI	GCATC	3 cut(s)	528, 772, 1332
SfcI	CTRYAG	2 cut(s)	39, 442
SmiMI	CAYNNNNRTG	2 cut(s)	431, 1053
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	7 cut(s)	44, 67, 193, 276, 1002, 1015, 1266
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	2 cut(s)	759, 1179
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	6 cut(s)	85, 307, 364, 443, 465, 1088
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	5 cut(s)	191, 201, 423, 560, 719
TasI	AATT	7 cut(s)	44, 67, 193, 276, 1002, 1015, 1266
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	498, 552
Tru1I	TTAA	3 cut(s)	335, 584, 1356
Tru9I	TTAA	3 cut(s)	335, 584, 1356
TscAI	CASTG	6 cut(s)	312, 535, 550, 942, 966, 1071
TseI	GCWGC	6 cut(s)	38, 101, 704, 820, 940, 1096
TspDTI	ATGAA	7 cut(s)	104, 187, 366, 674, 843, 986, 1143
TspRI	CASTG	6 cut(s)	312, 535, 550, 942, 966, 1071
XapI	RAATTY	3 cut(s)	193, 1002, 1015
XceI	RCATGY	4 cut(s)	298, 842, 904, 1052
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	1045
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	3 cut(s)	228, 971, 1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.