Rh7CG364800

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008224
Physical Location & Seq
Forward (+)
45396275 .. 45396760
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG364800.1

Sequence Viewer

Length: 486 bp
ATGGAGACTTGGTTGCTTAGACCATTCTCATCTGTCACTACAGAATCATCTCCTATTTCCTTCACTCATTTGTTAGCTGGAACCACTTTGATCATTGCAGTTCTCCTTTTAAAATTCACATCCAAGAGGATATATCTAATTGATTTCACCTGCTATCTGCCTCCTGGTAGATTGCGGGTTCCAAAGTCGCACTTCATCGAACATGTGGAACTGTCTAACGTCAATGGCAGAGAGGGTATTGACTTTCATGTCAAGGTATTGGAAAGATCAGGCATTGGATCAGAGACTTGCACGCCTACTTCATTGCACGAGATCCCGCCTCGTGGGTCTTTGGATGATACTCGAAAAGAAGTTGAAATGGTTCTCTTCACTGTTGTGGAAGACCTTCTTTCCAAGCACAAAGTAGATCCTAAAAGCATTGACATTCTTGTGTCAAACAGTCAAACTGCAGCATTTTCTGCTCAACACCATCCATTAGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

161

Amino Acids

18.0

Weight (kDa)

6.43

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 40 - 148 3.2e-30 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 158
AciI CCGC 2 cut(s) 175, 317
AclWI GGATC 3 cut(s) 286, 307, 401
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 374
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 3 cut(s) 286, 307, 401
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 2 cut(s) 360, 384
AsuHPI GGTGA 1 cut(s) 139
BauI CACGAG 2 cut(s) 308, 321
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 461
BccI CCATC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 2 cut(s) 39, 447
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 82, 180
BmrFI CCNGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 387
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 93, 302
BseBI CCWGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 119, 340, 469
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 2 cut(s) 93, 302
BseXI GCAGC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 278
Bsp143I GATC 5 cut(s) 90, 266, 278, 312, 406
BspACI CCGC 2 cut(s) 175, 317
BspLI GGNNCC 2 cut(s) 82, 180
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 3 cut(s) 286, 307, 401
BsrDI GCAATG 2 cut(s) 93, 302
BssMI GATC 5 cut(s) 90, 266, 278, 312, 406
BssSI CACGAG 2 cut(s) 308, 321
Bst2BI CACGAG 2 cut(s) 308, 321
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 213, 373, 440
Bst6I CTCTTC 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 119, 340, 469
BstKTI GATC 5 cut(s) 93, 269, 281, 315, 409
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 5 cut(s) 90, 266, 278, 312, 406
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 2 cut(s) 39, 447
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 2 cut(s) 312, 406
BstYI RGATCY 2 cut(s) 312, 406
BtsCI GGATG 3 cut(s) 119, 340, 469
BtsIMutI CAGTG 1 cut(s) 369
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 293
CviAII CATG 2 cut(s) 203, 248
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
DdeI CTNAG 1 cut(s) 17
DpnI GATC 5 cut(s) 92, 268, 280, 314, 408
DpnII GATC 5 cut(s) 90, 266, 278, 312, 406
DraI TTTAAA 1 cut(s) 111
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 206, 251
FaiI YATR 4 cut(s) 133, 204, 249, 484
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 372, 404
FatI CATG 2 cut(s) 202, 247
FauI CCCGC 2 cut(s) 168, 324
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 3 cut(s) 106, 347, 456
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 206, 251
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 70, 395
HpyCH4III ACNGT 3 cut(s) 213, 373, 440
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 98, 291, 307, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 206, 251
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 90, 266, 278, 312, 406
LpnPI CCDG 5 cut(s) 63, 150, 163, 177, 255
Lsp1109I GCAGC 1 cut(s) 461
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 92, 268, 280, 314, 408
MboI GATC 5 cut(s) 90, 266, 278, 312, 406
MboII GAAGA 2 cut(s) 358, 392
MflI RGATCY 2 cut(s) 312, 406
MluCI AATT 2 cut(s) 113, 138
MnlI CCTC 4 cut(s) 120, 171, 226, 330
MroXI GAANNNNTTC 2 cut(s) 360, 384
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 2 cut(s) 374, 428
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 5 cut(s) 90, 266, 278, 312, 406
NlaIII CATG 2 cut(s) 206, 251
NlaIV GGNNCC 2 cut(s) 82, 180
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 374
PaqCI CACCTGC 1 cut(s) 158
PciI ACATGT 1 cut(s) 202
PdmI GAANNNNTTC 2 cut(s) 360, 384
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 451
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 82, 180
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 312, 406
RseI CAYNNNNRTG 2 cut(s) 374, 428
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 5 cut(s) 90, 266, 278, 312, 406
ScrFI CCNGG 1 cut(s) 165
SetI ASST 5 cut(s) 79, 152, 222, 258, 387
SfcI CTRYAG 2 cut(s) 39, 447
SmiMI CAYNNNNRTG 2 cut(s) 374, 428
Sse9I AATT 2 cut(s) 113, 138
SsiI CCGC 2 cut(s) 175, 317
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 213, 373, 440
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 198, 343
TasI AATT 2 cut(s) 113, 138
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 184, 236, 291
TspRI CASTG 1 cut(s) 376
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 360, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.