Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Reverse (-)

25228580 .. 25229942

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGACTTGGCTGCTTAGACCATTCTCATCTGTCACTACAGAATCATTTCCGATTTCCTTTACTCATTTGGTAGCTTCAACCACTTTGATCATTGCAGTTCTCCTTTTAAAATTCAGATTCAAGAGGATATATCTAATTGATTTCACCTGCTATCTGCCTCCTGGTAGATTGCAGTTTCCAAAGTCGCACTTCATCGAACATGTGGAGCTGTCTAACGTCAATGACAGAGAGGGTATCGACTTCCAAGTCAAGGTATTGGAAAGATCAGGCATTGGATCAGAGACTTGCATGCCTACTTCACTGCACGAGATGCCGCCTCGTGGGTCTTTGGATGATACTCGAAAACAAGTTGAAATGGTTCTCTTTACTGTTGTTGAAGACCTTCTTTCCAAGCACAAAGTAGATCCTAAAAGCATTGACATTCTTGTGTCAAACTGCAGCATTTTCTGCTCAACACCATCCATTAGTTCTATGATCATAAACAAGTTTGGATTTCAAAACAACATAAAGAGAGTCAACCTCAGTGGAATGGGCTGCAGTGCTGGAATCTTGTCAATTTGTTTGGCCAAAGATCTTCTCAAAGTTCATAAAAAATCGTTGGCATTAGTCCTCAGCATGGAAGCTGTTACTCCCAATGGCTATGCGGGTAAGAAAAAATCAATGCTTCTTTCAAACATCTTGTTTCGGATGGGAGGAGCTGCTATTCTACTATCGAATAGGAAGCAAGACAAGGGAATGGCAAAGTATGAGCTTGAGCATCTTGTTCGAACCCACATTGGTTCGGATGACGAAGCATACCAATCTGTTTTCCAGAAATCAGATGAAGATGGAGTTGAAGGGGTCTCACTATCAAGAGCCCTACTAAATGTGGCAACAAAAGCTCTAAAAACAAACATATCATCTCTGGGGCCACTTGTGCTACCATACTCCGAGCAGCTTCGGTTCGCATGGTCCATGATCCATGTTGATCCAACAAAAAGAAATGCATGGTCAGACAGCATCAGTTTGTATCCTATTATTGATGATGAGATCCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

348

Amino Acids

38.71

Weight (kDa)

8.43

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	38 - 322	1.8e-117	FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_N	PF00195	154 - 238	7.7e-06	Chalcone and stilbene synthases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	2 cut(s)	317, 647
AclWI	GGATC	5 cut(s)	286, 401, 955, 965, 1027
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	253, 323, 619
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	7 cut(s)	81, 124, 356, 380, 500, 675, 839
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	7 cut(s)	77, 211, 626, 701, 754, 884, 940
AluI	AGCT	7 cut(s)	77, 211, 626, 701, 754, 884, 940
Alw26I	GTCTC	2 cut(s)	278, 850
AlwI	GGATC	5 cut(s)	286, 401, 955, 965, 1027
AoxI	GGCC	2 cut(s)	567, 911
ApeKI	GCWGC	5 cut(s)	13, 441, 537, 701, 937
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	3 cut(s)	48, 360, 384
AspS9I	GGNCC	2 cut(s)	911, 954
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	954
BalI	TGGCCA	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	862
BauI	CACGAG	2 cut(s)	308, 321
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	4 cut(s)	453, 524, 688, 949
BccI	CCATC	3 cut(s)	469, 685, 824
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	1023
BclI	TGATCA	2 cut(s)	90, 477
BcoDI	GTCTC	2 cut(s)	278, 850
BfmI	CTRYAG	3 cut(s)	39, 439, 538
BfuAI	ACCTGC	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	1023
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	6 cut(s)	14, 317, 442, 538, 702, 938
BlsI	GCNGC	6 cut(s)	15, 318, 443, 539, 703, 939
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	954
BmgT120I	GGNCC	2 cut(s)	911, 954
BmiI	GGNNCC	1 cut(s)	912
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	3 cut(s)	303, 769, 1011
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 323, 619
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	340, 461, 696, 793
BseLI	CCNNNNNNNGG	3 cut(s)	253, 323, 619
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	538, 628
BseRI	GAGGAG	1 cut(s)	711
BseXI	GCAGC	4 cut(s)	453, 524, 688, 949
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	569, 913
BslI	CCNNNNNNNGG	3 cut(s)	253, 323, 619
BsmAI	GTCTC	2 cut(s)	278, 850
BsnI	GGCC	2 cut(s)	569, 913
Bso31I	GGTCTC	1 cut(s)	850
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp143I	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
BspACI	CCGC	2 cut(s)	317, 647
BspANI	GGCC	2 cut(s)	569, 913
BspCNI	CTCAG	2 cut(s)	537, 627
BspLI	GGNNCC	1 cut(s)	912
BspMAI	CTGCAG	2 cut(s)	443, 542
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	5 cut(s)	286, 401, 955, 965, 1027
BspT104I	TTCGAA	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	93
BssMI	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
BssSI	CACGAG	2 cut(s)	308, 321
Bst2BI	CACGAG	2 cut(s)	308, 321
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	373
BstAPI	GCANNNNNTGC	2 cut(s)	313, 450
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	3 cut(s)	17, 524, 614
BstF5I	GGATG	4 cut(s)	340, 461, 696, 793
BstKTI	GATC	9 cut(s)	93, 269, 281, 409, 480, 577, 963, 973, 1035
BstMAI	GTCTC	2 cut(s)	278, 850
BstMBI	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
BstMWI	GCNNNNNNNGC	4 cut(s)	313, 450, 881, 919
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	2 cut(s)	206, 295
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	3 cut(s)	39, 439, 538
BstV1I	GCAGC	4 cut(s)	453, 524, 688, 949
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	406, 574, 1032
BstYI	RGATCY	3 cut(s)	406, 574, 1032
BsuI	GTATCC	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	569, 913
BtsCI	GGATG	4 cut(s)	340, 461, 696, 793
BtsI	GCAGTG	2 cut(s)	302, 547
BtsIMutI	CAGTG	3 cut(s)	302, 532, 547
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	911, 954
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	203, 292, 619, 951, 958, 965, 990
DdeI	CTNAG	3 cut(s)	17, 524, 614
DpnI	GATC	9 cut(s)	92, 268, 280, 408, 479, 576, 962, 972, 1034
DpnII	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
DraI	TTTAAA	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	862
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	954
EcoRII	CCWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	991
EcoT38I	GRGCYC	1 cut(s)	862
FaeI	CATG	7 cut(s)	206, 295, 622, 954, 961, 968, 993
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 372, 404
FatI	CATG	7 cut(s)	202, 291, 618, 950, 957, 964, 989
FauI	CCCGC	1 cut(s)	640
FbaI	TGATCA	2 cut(s)	90, 477
Fnu4HI	GCNGC	6 cut(s)	14, 317, 442, 538, 702, 938
FokI	GGATG	4 cut(s)	347, 448, 703, 800
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	6 cut(s)	14, 317, 442, 538, 702, 938
GluI	GCNGC	6 cut(s)	14, 317, 442, 538, 702, 938
HaeIII	GGCC	2 cut(s)	569, 913
Hin1II	CATG	7 cut(s)	206, 295, 622, 954, 961, 968, 993
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	4 cut(s)	44, 120, 516, 549
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	8 cut(s)	54, 119, 283, 690, 787, 823, 934, 997
Hpy188III	TCNNGA	3 cut(s)	124, 814, 855
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	395, 833
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	98, 175, 291, 307, 441, 540, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	313, 450, 881, 919
HpyF3I	CTNAG	3 cut(s)	17, 524, 614
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	7 cut(s)	206, 295, 622, 954, 961, 968, 993
Ksp22I	TGATCA	2 cut(s)	90, 477
Kzo9I	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
LmnI	GCTCC	2 cut(s)	208, 698
LpnPI	CCDG	7 cut(s)	150, 163, 177, 255, 531, 827, 893
Lsp1109I	GCAGC	4 cut(s)	453, 524, 688, 949
LweI	GCATC	3 cut(s)	303, 769, 1011
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	34, 628
MalI	GATC	9 cut(s)	92, 268, 280, 408, 479, 576, 962, 972, 1034
MboI	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
MboII	GAAGA	3 cut(s)	392, 569, 839
MflI	RGATCY	3 cut(s)	406, 574, 1032
MhlI	GDGCHC	1 cut(s)	862
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	3 cut(s)	113, 138, 558
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	998
MnlI	CCTC	7 cut(s)	120, 171, 226, 330, 533, 623, 689
Mox20I	TGGCCA	1 cut(s)	569
Mph1103I	ATGCAT	1 cut(s)	991
MroXI	GAANNNNTTC	3 cut(s)	48, 360, 384
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	313, 450, 881, 919
NdeII	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
NlaIII	CATG	7 cut(s)	206, 295, 622, 954, 961, 968, 993
NlaIV	GGNNCC	1 cut(s)	912
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	2 cut(s)	206, 295
NspV	TTCGAA	1 cut(s)	769
PaeI	GCATGC	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	158
PciI	ACATGT	1 cut(s)	202
PdmI	GAANNNNTTC	3 cut(s)	48, 360, 384
PfeI	GAWTC	3 cut(s)	44, 120, 549
PkrI	GCNGC	6 cut(s)	15, 318, 443, 539, 703, 939
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PscI	ACATGT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	911, 954
PstI	CTGCAG	2 cut(s)	443, 542
PsuI	RGATCY	3 cut(s)	406, 574, 1032
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	6 cut(s)	14, 317, 442, 538, 702, 938
Sau3AI	GATC	9 cut(s)	90, 266, 278, 406, 477, 574, 960, 970, 1032
Sau96I	GGNCC	2 cut(s)	911, 954
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	3 cut(s)	303, 769, 1011
SfcI	CTRYAG	3 cut(s)	39, 439, 538
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	1 cut(s)	954
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	3 cut(s)	113, 138, 558
SsiI	CCGC	2 cut(s)	317, 647
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	5 cut(s)	198, 240, 343, 716, 769
TasI	AATT	3 cut(s)	113, 138, 558
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	3 cut(s)	44, 120, 549
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	3 cut(s)	309, 532, 547
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	5 cut(s)	13, 441, 537, 701, 937
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	184, 578, 840
TspRI	CASTG	3 cut(s)	309, 532, 547
VpaK11BI	GGWCC	1 cut(s)	954
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	2 cut(s)	206, 295
XmnI	GAANNNNTTC	3 cut(s)	48, 360, 384
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.