Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Reverse (-)

46452742 .. 46453909

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G569900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

AAGCAAATGTATATACCTTATCAACTTCACCTGCTACCGCCTCCTGATATCCTGCGAGTTACAAAATTGAATTACATCGAACACATTGAAACAGATAAGCTGGTTGAAGAAGAAAGTATCAGTTTCCAAGCGAAGGTATTGGAAAGATCAGGCATTGGGTGGATACTTCTTTGGGTGCCACTACAAAAAAAAACTGAAATGGTTCTCTTCACTGTTGTCAATGACCTTCTTTCCAAGCACAAGATAAATCCCAAAAGCATTGACATTCTTGTGTCAAACTGTAGCCTTTTCTGCCCTATGCCGTCCATTACTTCTATGATCCTGAACAAGTTTGGATTCCGGAGCAACATAAAAAGCTTCAACCTTAGCAGAATGGGATGCAGTGCTGGAATCTGGTCAATAAGTATGGCTAAAGATCTTCTAAAAGTTCACAGGAAATCATTGGCTTTAGTCCTCAGCATGGAAGCAGTAACTCCCAATGGTTATGGGGGTAGAGAAAAATCAACGCTTCTTCCCAACATTTTGTTTTGGATGGGGGGAGCTGCGATTCTTTTGTCGAATAGGAAGCAAGACAAGCGAATAGCTAAGTATGAGCTCCAGCATCTTGTCCGAACACACATTGATTCGGATGATCAAGCATACCAATCTGTTTTCCAGCAACCTGATGAAGCAGGGCATGTAGGGGTCTCACTATCATGGGCACTTTTACATGTGGCAGCGAAAGCTCTAAGAAATAACATGTCGGAGTTGGGGCCACTTGTGTTACCATATATGGAGCAGCTCCGATATGGATGGTCACTCTGCTATTTGGAGGCAAAAGGAAGGGTGACGAAGGGAAACCCAGTGTGGCAAATCGCCTTCGGAAGTGGCTTCAAGTGTAACAGTGCGGTTTGGAAATGCATTCCGGATATTGATCCAATGGAGAGAAATGCCTGGTCAGACAGAGTCGATTCCTATCCTGTTAATGAGATCCCAAATGCGAGATCCAATGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

333

Amino Acids

37.57

Weight (kDa)

9.1

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	175
AccIII	TCCGGA	2 cut(s)	339, 904
AciI	CCGC	2 cut(s)	38, 887
AclWI	GGATC	4 cut(s)	313, 908, 964, 978
AfiI	CCNNNNNNNGG	2 cut(s)	133, 460
AflIII	ACRYGT	2 cut(s)	709, 738
AgsI	TTSAA	5 cut(s)	70, 89, 107, 361, 874
AjnI	CCWGG	1 cut(s)	932
AluBI	AGCT	7 cut(s)	100, 357, 542, 584, 595, 725, 781
AluI	AGCT	7 cut(s)	100, 357, 542, 584, 595, 725, 781
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	4 cut(s)	313, 908, 964, 978
Aor13HI	TCCGGA	2 cut(s)	339, 904
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	3 cut(s)	542, 716, 778
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	2 cut(s)	20, 838
BaeGI	GKGCMC	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	529, 728, 790
BccI	CCATC	2 cut(s)	526, 786
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	934
BciVI	GTATCC	1 cut(s)	156
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	691
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	3 cut(s)	543, 717, 779
BlsI	GCNGC	3 cut(s)	544, 718, 780
Bme1390I	CCNGG	1 cut(s)	934
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	2 cut(s)	177, 753
BmrFI	CCNGG	1 cut(s)	934
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	2 cut(s)	368, 610
BmuI	ACTGGG	1 cut(s)	836
BpmI	CTGGAG	1 cut(s)	581
Bpu10I	CCTNAGC	2 cut(s)	365, 455
BsaBI	GATNNNNATC	2 cut(s)	912, 954
BsaI	GGTCTC	1 cut(s)	691
BsaWI	WCCGGW	2 cut(s)	339, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 460
Bse1I	ACTGG	1 cut(s)	842
Bse8I	GATNNNNATC	2 cut(s)	912, 954
BseAI	TCCGGA	2 cut(s)	339, 904
BseBI	CCWGG	1 cut(s)	934
BseGI	GGATG	4 cut(s)	383, 537, 634, 797
BseJI	GATNNNNATC	2 cut(s)	912, 954
BseLI	CCNNNNNNNGG	2 cut(s)	133, 460
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	842
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	3 cut(s)	529, 728, 790
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	340, 905
BslI	CCNNNNNNNGG	2 cut(s)	133, 460
BsmAI	GTCTC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	1 cut(s)	754
Bso31I	GGTCTC	1 cut(s)	691
Bsp1286I	GDGCHC	2 cut(s)	597, 703
Bsp13I	TCCGGA	2 cut(s)	339, 904
Bsp143I	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
BspACI	CCGC	2 cut(s)	38, 887
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	2 cut(s)	339, 904
BspLI	GGNNCC	2 cut(s)	177, 753
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	313, 908, 964, 978
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	842
BssMI	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
Bst2UI	CCWGG	1 cut(s)	934
Bst4CI	ACNGT	3 cut(s)	214, 281, 884
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	4 cut(s)	365, 455, 585, 728
BstF5I	GGATG	4 cut(s)	383, 537, 634, 797
BstKTI	GATC	7 cut(s)	149, 321, 418, 634, 916, 972, 986
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 574, 722
BstNI	CCWGG	1 cut(s)	934
BstNSI	RCATGY	3 cut(s)	680, 713, 742
BstSCI	CCNGG	1 cut(s)	932
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	3 cut(s)	529, 728, 790
BstX2I	RGATCY	3 cut(s)	415, 969, 983
BstYI	RGATCY	3 cut(s)	415, 969, 983
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	754
BtsCI	GGATG	4 cut(s)	383, 537, 634, 797
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	4 cut(s)	210, 388, 849, 889
BveI	ACCTGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	752
CviAII	CATG	5 cut(s)	460, 677, 696, 710, 739
DdeI	CTNAG	4 cut(s)	365, 455, 585, 728
DpnI	GATC	7 cut(s)	148, 320, 417, 633, 915, 971, 985
DpnII	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	932
EcoRV	GATATC	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	902
EcoT38I	GRGCYC	1 cut(s)	597
FaeI	CATG	5 cut(s)	463, 680, 699, 713, 742
FatI	CATG	5 cut(s)	459, 676, 695, 709, 738
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	543, 717, 779
FokI	GGATG	4 cut(s)	390, 544, 641, 804
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	3 cut(s)	543, 717, 779
GluI	GCNGC	3 cut(s)	543, 717, 779
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	2 cut(s)	340, 905
Hin1II	CATG	5 cut(s)	463, 680, 699, 713, 742
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	6 cut(s)	336, 390, 547, 623, 945, 950
HpaII	CCGG	2 cut(s)	340, 905
HphI	GGTGA	2 cut(s)	20, 838
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	6 cut(s)	611, 628, 745, 785, 863, 940
Hpy188III	TCNNGA	4 cut(s)	44, 322, 340, 905
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	5 cut(s)	127, 236, 816, 826, 868
HpyCH4III	ACNGT	3 cut(s)	214, 281, 884
HpyCH4V	TGCA	2 cut(s)	381, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 574, 722
HpyF3I	CTNAG	4 cut(s)	365, 455, 585, 728
Hsp92II	CATG	5 cut(s)	463, 680, 699, 713, 742
Kpn2I	TCCGGA	2 cut(s)	339, 904
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
LmnI	GCTCC	5 cut(s)	342, 539, 600, 775, 786
Lsp1109I	GCAGC	3 cut(s)	529, 728, 790
LweI	GCATC	2 cut(s)	368, 610
MaeIII	GTNAC	6 cut(s)	58, 469, 762, 795, 826, 878
MalI	GATC	7 cut(s)	148, 320, 417, 633, 915, 971, 985
MboI	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
MboII	GAAGA	5 cut(s)	119, 122, 199, 410, 503
MflI	RGATCY	3 cut(s)	415, 969, 983
MhlI	GDGCHC	2 cut(s)	597, 703
MluCI	AATT	2 cut(s)	65, 70
MlyI	GAGTC	1 cut(s)	954
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	3 cut(s)	51, 464, 805
Mph1103I	ATGCAT	1 cut(s)	902
MroI	TCCGGA	2 cut(s)	339, 904
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	2 cut(s)	269, 694
MspI	CCGG	2 cut(s)	340, 905
MspR9I	CCNGG	1 cut(s)	934
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	1 cut(s)	934
MwoI	GCNNNNNNNGC	3 cut(s)	291, 574, 722
NdeII	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
NlaIII	CATG	5 cut(s)	463, 680, 699, 713, 742
NlaIV	GGNNCC	2 cut(s)	177, 753
NmuCI	GTSAC	2 cut(s)	795, 826
NsiI	ATGCAT	1 cut(s)	902
NspI	RCATGY	3 cut(s)	680, 713, 742
PaqCI	CACCTGC	1 cut(s)	39
PciI	ACATGT	2 cut(s)	709, 738
PctI	GAATGC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	5 cut(s)	336, 390, 547, 623, 950
PflFI	GACNNNGTC	1 cut(s)	944
PkrI	GCNGC	3 cut(s)	544, 718, 780
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PscI	ACATGT	2 cut(s)	709, 738
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	932
PspN4I	GGNNCC	2 cut(s)	177, 753
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	3 cut(s)	415, 969, 983
PsyI	GACNNNGTC	1 cut(s)	944
RseI	CAYNNNNRTG	2 cut(s)	269, 694
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	3 cut(s)	543, 717, 779
Sau3AI	GATC	7 cut(s)	146, 318, 415, 631, 913, 969, 983
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	1 cut(s)	954
ScrFI	CCNGG	1 cut(s)	934
SduI	GDGCHC	2 cut(s)	597, 703
SfaNI	GCATC	2 cut(s)	368, 610
SfcI	CTRYAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	269, 694
Sse9I	AATT	2 cut(s)	65, 70
SsiI	CCGC	2 cut(s)	38, 887
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	932
TaaI	ACNGT	3 cut(s)	214, 281, 884
TaqI	TCGA	3 cut(s)	78, 557, 948
TasI	AATT	2 cut(s)	65, 70
TfiI	GAWTC	5 cut(s)	336, 390, 547, 623, 950
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	4 cut(s)	217, 388, 849, 889
TseFI	GTSAC	2 cut(s)	795, 826
TseI	GCWGC	3 cut(s)	542, 716, 778
Tsp45I	GTSAC	2 cut(s)	795, 826
TspDTI	ATGAA	1 cut(s)	681
TspRI	CASTG	4 cut(s)	217, 388, 849, 889
Tth111I	GACNNNGTC	1 cut(s)	944
XceI	RCATGY	3 cut(s)	680, 713, 742
XmnI	GAANNNNTTC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.