Rh7BG338300

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008224
Physical Location & Seq
Forward (+)
35325927 .. 35326433
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG338300.1

Sequence Viewer

Length: 507 bp
ATGGTTCTCTTCATTGTTGTTGAAGACCTTCTTTCCAAGCACAAAGTAGATCCTAAAAGCATTGACATTCTTGTGTCAAACTGCAGCATTTTCTGCTCAACACCATCCATTAGTTCTATGATCATAAACAAGTTTGGATTTCGAAGCAACATAAAGAGCGTCAACCTCAGTGGAATGGGCTGCAGTGCTGGAATCTTGTCAATTTGTTTGGCCAAAGATCTTCTCAAAGTTCATAAAAACTCATTGGCATTAGTCCTCAGCATGGAAGCTGTAACTCCCAATGGCTATGCGGGTAAGAAAAAATCAATGCTTCTTCCAAACATCTTGTTTCGGATGGGAGGAGCTGCTATTCTACTATCGAATAGGAAGCAAGACAAGGGAATGGCAAAGTATGAGCTTGAGCATCTTGTTCAAACCACATTGGTTCGGATGACGAAGCATACCAATCTGTTTTCCAGAAATCAGATGATGGAGTTGAAGGGGTCTCACTATCAAGAGCCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

168

Amino Acids

18.62

Weight (kDa)

9.61

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 2 - 141 2.7e-64 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 23, 413, 478
AluBI AGCT 3 cut(s) 269, 344, 397
AluI AGCT 3 cut(s) 269, 344, 397
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 84, 180, 344
Asp700I GAANNNNTTC 1 cut(s) 27
AsuII TTCGAA 1 cut(s) 142
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 96, 167, 331
BccI CCATC 3 cut(s) 112, 328, 463
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 489
BfmI CTRYAG 2 cut(s) 82, 181
BglII AGATCT 1 cut(s) 217
BisI GCNGC 3 cut(s) 85, 181, 345
BlsI GCNGC 3 cut(s) 86, 182, 346
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseGI GGATG 3 cut(s) 104, 339, 435
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 181, 271
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 96, 167, 331
BshFI GGCC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 489
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 3 cut(s) 49, 120, 217
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 180, 270
BspMAI CTGCAG 2 cut(s) 86, 185
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 489
BssMI GATC 3 cut(s) 49, 120, 217
Bst6I CTCTTC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 167, 257
BstF5I GGATG 3 cut(s) 104, 339, 435
BstKTI GATC 3 cut(s) 52, 123, 220
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 3 cut(s) 49, 120, 217
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstSFI CTRYAG 2 cut(s) 82, 181
BstV1I GCAGC 3 cut(s) 96, 167, 331
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 49, 217
BstYI RGATCY 2 cut(s) 49, 217
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 3 cut(s) 104, 339, 435
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 175, 190
CseI GACGC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 262
CviJI RGCY 7 cut(s) 180, 212, 269, 285, 344, 397, 499
CviKI_1 RGCY 7 cut(s) 180, 212, 269, 285, 344, 397, 499
DdeI CTNAG 2 cut(s) 167, 257
DpnI GATC 3 cut(s) 51, 122, 219
DpnII GATC 3 cut(s) 49, 120, 217
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 1 cut(s) 265
FaiI YATR 8 cut(s) 119, 125, 152, 234, 263, 288, 393, 441
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 85, 181, 345
FokI GGATG 3 cut(s) 91, 346, 442
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 85, 181, 345
GluI GCNGC 3 cut(s) 85, 181, 345
HaeIII GGCC 1 cut(s) 212
HgaI GACGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 333, 429, 465
Hpy188III TCNNGA 2 cut(s) 456, 494
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 38, 472
HpyCH4V TGCA 2 cut(s) 84, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 167, 257
Hsp92II CATG 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 49, 120, 217
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 2 cut(s) 174, 469
Lsp1109I GCAGC 3 cut(s) 96, 167, 331
LweI GCATC 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 51, 122, 219
MboI GATC 3 cut(s) 49, 120, 217
MboII GAAGA 3 cut(s) 35, 212, 305
MflI RGATCY 2 cut(s) 49, 217
MhlI GDGCHC 1 cut(s) 501
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 212
MnlI CCTC 3 cut(s) 176, 266, 332
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 3 cut(s) 49, 120, 217
NlaIII CATG 1 cut(s) 265
NspV TTCGAA 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 86, 182, 346
PstI CTGCAG 2 cut(s) 86, 185
PsuI RGATCY 2 cut(s) 49, 217
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 3 cut(s) 85, 181, 345
Sau3AI GATC 3 cut(s) 49, 120, 217
SduI GDGCHC 1 cut(s) 501
SetI ASST 5 cut(s) 30, 168, 271, 346, 399
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 2 cut(s) 82, 181
SfuI TTCGAA 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 290
TaqI TCGA 2 cut(s) 142, 359
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 192
TscAI CASTG 2 cut(s) 175, 190
TseI GCWGC 3 cut(s) 84, 180, 344
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 2 cut(s) 175, 190
XmnI GAANNNNTTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.