Rroxscaffold_3G00237310

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008224
Physical Location & Seq
Reverse (-)
24898029 .. 24899204
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237310.1

Sequence Viewer

Length: 1176 bp
ATGGAGACTTGGCTGCTTAGACCATTCTCATCTGTCACTACAGAATCATTTCCGATTTCCTTTACTCATTTGTTAGCTGGAACCACTTTGATCATTGCAGTTCTCCTTTTAATTAAAATTCAAATCCAAGAGGATATATATCAAATTGATTTCACCTGCTATCTGCCTCCTGGTAGATTGTGGGTTCCAAAGTCGCACTTCATCGAACATGTGGAGCTGTCTAACGTCAATGGCAGAGAGGGTATCGACTTCCAAGTCAAGGTATTGGAAAGATCAGGCATTGGATCAGAGACTTGCATGCCTACTTCATTGCACGAGATCCCGCCTCGTGGGTCTTTGGATGATACTCGAAAAGAAGTTGAAATGGTTCTCTTCACTGTTGTTGAAGACCTTCTTTCTAAGCACAAAGTAGATCCTAAAAGCATTGACATTCTTGTGTCAAACTGCAGCATTTTCTGCTCAACACCATCCATTAGTTCTATGATCATAAACAAGTTTGGATTTCGAAGCAACATAAAGAGCGTCAACCTCAGTGGAATGGGCTGCAGTGCTGGAATCTTGTCAATTTGTTTGGCCAAAGATCTTCTCAAAGTTCATAAAAACTCATTGGCATTAGTCCTCAGCATGGAAGCTGTAACTCCCAATGGCTATGCGGGTAAGAAAAAATCAATGCTTCTTCCAAACATCTTGTTTCGGATGGGAGGAGCTACGATTCTACTATCGAATAGGAAGCAAGACGAGGGAATGGCAAAGTATGAGCTTGAGCATCTTGTTCAAACCCACATTGGTTCAGATGAGGAAGCATACCAATCTGTTTTCCAGAAATCAGATGAAGATGGAGTTGAAGGGGTCTCACTATCAAGATCCCTACTAAATGTGGCAACAAAAGCTCTAAAAACAAACATATCATCTCTGGGGCCACTTGTGCTACCACACTCCGAGCAGCTTCGGTTCGCATGGTCCATGATCCGTAAGAAACTCTTGTTTTTGTCCAGACAGAAGGGAGCTTATGTGCCAAATTTCAAGAAGGCGATCCAACATTTCTTTATACATGCTGGTGGAAGAGCAGTGATCGATGGCATAGAGCAAAGTCTGAAACTGCAGAAGGAAGATGGAGAGGCTTCAAGAATGACATTACATAGATTTGGACACATCATCTTCTTCAATCTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

391

Amino Acids

43.54

Weight (kDa)

8.61

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 43 - 327 6.7e-116 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
AasI GACNNNNNNGTC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 164
AciI CCGC 2 cut(s) 323, 653
AclWI GGATC 6 cut(s) 292, 313, 407, 858, 961, 1027
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 2 cut(s) 117, 1018
AfiI CCNNNNNNNGG 3 cut(s) 259, 329, 625
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 8 cut(s) 122, 362, 386, 776, 845, 1024, 1125, 1165
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 8 cut(s) 77, 217, 632, 707, 760, 890, 946, 1007
AluI AGCT 8 cut(s) 77, 217, 632, 707, 760, 890, 946, 1007
Alw26I GTCTC 2 cut(s) 284, 856
AlwI GGATC 6 cut(s) 292, 313, 407, 858, 961, 1027
AoxI GGCC 2 cut(s) 573, 917
ApeKI GCWGC 4 cut(s) 13, 447, 543, 943
ApoI RAATTY 2 cut(s) 117, 1018
Asp700I GAANNNNTTC 3 cut(s) 48, 366, 390
AspS9I GGNCC 2 cut(s) 917, 960
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 960
BalI TGGCCA 1 cut(s) 575
BauI CACGAG 2 cut(s) 314, 327
BbsI GAAGAC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 620
BbvI GCAGC 3 cut(s) 459, 530, 955
BccI CCATC 5 cut(s) 475, 691, 830, 1070, 1106
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 2 cut(s) 90, 483
BcoDI GTCTC 2 cut(s) 284, 856
BfmI CTRYAG 4 cut(s) 39, 445, 544, 1100
BfuAI ACCTGC 1 cut(s) 164
BglII AGATCT 1 cut(s) 580
BisI GCNGC 4 cut(s) 14, 448, 544, 944
BlsI GCNGC 4 cut(s) 15, 449, 545, 945
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 960
BmgT120I GGNCC 2 cut(s) 917, 960
BmiI GGNNCC 3 cut(s) 82, 186, 918
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 620
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 782
Bsa29I ATCGAT 1 cut(s) 1074
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 856
BsaXI ACNNNNNCTCC 2 cut(s) 996, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 329, 625
Bse3DI GCAATG 2 cut(s) 93, 308
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 1074
BseGI GGATG 3 cut(s) 346, 467, 702
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 259, 329, 625
BseMI GCAATG 2 cut(s) 93, 308
BseMII CTCAG 2 cut(s) 544, 634
BseRI GAGGAG 1 cut(s) 717
BseXI GCAGC 3 cut(s) 459, 530, 955
BshFI GGCC 2 cut(s) 575, 919
BshVI ATCGAT 1 cut(s) 1074
BslI CCNNNNNNNGG 3 cut(s) 259, 329, 625
BsmAI GTCTC 2 cut(s) 284, 856
BsnI GGCC 2 cut(s) 575, 919
Bso31I GGTCTC 1 cut(s) 856
Bsp119I TTCGAA 1 cut(s) 505
BspACI CCGC 2 cut(s) 323, 653
BspANI GGCC 2 cut(s) 575, 919
BspCNI CTCAG 2 cut(s) 543, 633
BspDI ATCGAT 1 cut(s) 1074
BspLI GGNNCC 3 cut(s) 82, 186, 918
BspMAI CTGCAG 3 cut(s) 449, 548, 1104
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 6 cut(s) 292, 313, 407, 858, 961, 1027
BspQI GCTCTTC 1 cut(s) 1057
BspT104I TTCGAA 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 856
BsrDI GCAATG 2 cut(s) 93, 308
BssSI CACGAG 2 cut(s) 314, 327
Bst2BI CACGAG 2 cut(s) 314, 327
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 2 cut(s) 377, 1057
BstAPI GCANNNNNTGC 1 cut(s) 456
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 4 cut(s) 17, 399, 530, 620
BstF5I GGATG 3 cut(s) 346, 467, 702
BstMAI GTCTC 2 cut(s) 284, 856
BstMWI GCNNNNNNNGC 3 cut(s) 456, 887, 925
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 3 cut(s) 212, 301, 1055
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 4 cut(s) 39, 445, 544, 1100
BstV1I GCAGC 3 cut(s) 459, 530, 955
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 4 cut(s) 318, 412, 580, 863
BstYI RGATCY 4 cut(s) 318, 412, 580, 863
Bsu15I ATCGAT 1 cut(s) 1074
BsuRI GGCC 2 cut(s) 575, 919
BsuTUI ATCGAT 1 cut(s) 1074
BtsCI GGATG 3 cut(s) 346, 467, 702
BtsI GCAGTG 2 cut(s) 553, 1074
BtsIMutI CAGTG 4 cut(s) 375, 538, 553, 1074
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 917, 960
ClaI ATCGAT 1 cut(s) 1074
CseI GACGC 1 cut(s) 511
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 6 cut(s) 209, 298, 625, 957, 964, 1052
DdeI CTNAG 4 cut(s) 17, 399, 530, 620
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 377, 1057
EarI CTCTTC 2 cut(s) 377, 1057
Eco31I GGTCTC 1 cut(s) 856
Eco47I GGWCC 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 6 cut(s) 212, 301, 628, 960, 967, 1055
FalI AAGNNNNNCTT 6 cut(s) 182, 214, 378, 410, 965, 997
FatI CATG 6 cut(s) 208, 297, 624, 956, 963, 1051
FauI CCCGC 2 cut(s) 330, 646
FbaI TGATCA 2 cut(s) 90, 483
Fnu4HI GCNGC 4 cut(s) 14, 448, 544, 944
FokI GGATG 3 cut(s) 353, 454, 709
Fsp4HI GCNGC 4 cut(s) 14, 448, 544, 944
GluI GCNGC 4 cut(s) 14, 448, 544, 944
HaeIII GGCC 2 cut(s) 575, 919
HgaI GACGC 1 cut(s) 511
Hin1II CATG 6 cut(s) 212, 301, 628, 960, 967, 1055
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 3 cut(s) 44, 555, 712
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 7 cut(s) 54, 289, 696, 793, 829, 940, 1095
Hpy188III TCNNGA 5 cut(s) 820, 861, 993, 1024, 1125
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 5 cut(s) 401, 839, 994, 1021, 1099
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 6 cut(s) 98, 297, 313, 447, 546, 1102
HpyF10VI GCNNNNNNNGC 3 cut(s) 456, 887, 925
HpyF3I CTNAG 4 cut(s) 17, 399, 530, 620
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 212, 301, 628, 960, 967, 1055
Ksp22I TGATCA 2 cut(s) 90, 483
LguI GCTCTTC 1 cut(s) 1057
LmnI GCTCC 3 cut(s) 214, 704, 1004
Lsp1109I GCAGC 3 cut(s) 459, 530, 955
LweI GCATC 1 cut(s) 775
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 34, 634
MboII GAAGA 9 cut(s) 364, 398, 575, 668, 845, 1074, 1121, 1150, 1153
MflI RGATCY 4 cut(s) 318, 412, 580, 863
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 5 cut(s) 111, 117, 144, 564, 1018
MluNI TGGCCA 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 1060
Mox20I TGGCCA 1 cut(s) 575
MroXI GAANNNNTTC 3 cut(s) 48, 366, 390
MscI TGGCCA 1 cut(s) 575
MseI TTAA 2 cut(s) 110, 114
MslI CAYNNNNRTG 2 cut(s) 434, 1056
Msp20I TGGCCA 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 456, 887, 925
NlaIII CATG 6 cut(s) 212, 301, 628, 960, 967, 1055
NlaIV GGNNCC 3 cut(s) 82, 186, 918
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 3 cut(s) 212, 301, 1055
NspV TTCGAA 1 cut(s) 505
PacI TTAATTAA 1 cut(s) 114
PaeI GCATGC 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 1057
PdmI GAANNNNTTC 3 cut(s) 48, 366, 390
PfeI GAWTC 3 cut(s) 44, 555, 712
PkrI GCNGC 4 cut(s) 15, 449, 545, 945
PscI ACATGT 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 82, 186, 918
PspPI GGNCC 2 cut(s) 917, 960
PstI CTGCAG 3 cut(s) 449, 548, 1104
PsuI RGATCY 4 cut(s) 318, 412, 580, 863
RseI CAYNNNNRTG 2 cut(s) 434, 1056
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 2 cut(s) 110, 114
SatI GCNGC 4 cut(s) 14, 448, 544, 944
Sau96I GGNCC 2 cut(s) 917, 960
ScrFI CCNGG 1 cut(s) 171
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 4 cut(s) 39, 445, 544, 1100
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 960
SmiMI CAYNNNNRTG 2 cut(s) 434, 1056
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SphI GCATGC 1 cut(s) 301
Sse9I AATT 5 cut(s) 111, 117, 144, 564, 1018
SsiI CCGC 2 cut(s) 323, 653
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 228
TaqI TCGA 6 cut(s) 204, 246, 349, 505, 722, 1074
TasI AATT 5 cut(s) 111, 117, 144, 564, 1018
TfiI GAWTC 3 cut(s) 44, 555, 712
Tru1I TTAA 2 cut(s) 110, 114
Tru9I TTAA 2 cut(s) 110, 114
TscAI CASTG 4 cut(s) 382, 538, 553, 1074
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 13, 447, 543, 943
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 190, 297, 584, 846
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 4 cut(s) 382, 538, 553, 1074
VpaK11BI GGWCC 1 cut(s) 960
XapI RAATTY 2 cut(s) 117, 1018
XceI RCATGY 3 cut(s) 212, 301, 1055
XmnI GAANNNNTTC 3 cut(s) 48, 366, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.