Rh7DG345500

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008224
Physical Location & Seq
Forward (+)
45701961 .. 45702690
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG345500.1

Sequence Viewer

Length: 636 bp
ATGGCTATGCGGGTAAGAAAAAAGTCAATGCTTCTTCCAAACATCTTGTTTCGGATGGGAGGAGCTGCTATTCTACTATCAAATAGGAAGCAAGACAAGGGAATGGCAAAGTATGAGCTTGAGCATCTTGTTCAAACCCACATTGGTTCAGATGACGAAGCATACCAATCTGTTTTCCAGAAATCAGATGAAGATGGAGTTGAAGGGGTCTCACTATCAAGAGCCCTACTAAATGTGGCAACAAAAGCTCTAAAAACAAACATATCATCTCTGGGGCCACTTGTGCTACCACACTCCGCTCGAGCAGCTTCGGTTCTCATGGTCCATGATCCAGCAGTGATCGATGGCCTAGAGCAAAGTCTGAAACTGCAGAAGGAAGATGGAGAGGCTTCAAGAATGACATTACATAGATTTGGAAACACATCATCTTCTTCAATCTGGTATGAGCTTTGCTATTTGGAAACAAAAGGAAGGGTGAAGAAAAGAAACAAAGTTTGGCAAATTGCATTTGGAAGTGGCTTCAAGTGTAACAGTGCAGTTTGGAAATGCATTTCAGATGTTGATCCAACAAAAAGAAATGCATGGTCAGACAGCATCAATTTGTATCCTATTATTGATGATGAGATCCCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

211

Amino Acids

23.5

Weight (kDa)

8.91

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 7 - 104 1.9e-37 FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_C PF02797 110 - 181 1.1e-07 Chalcone and stilbene synthases, C-terminal domain
ACP_syn_III_C PF08541 122 - 182 3.4e-09 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 2 cut(s) 10, 297
AclWI GGATC 3 cut(s) 323, 557, 619
AgsI TTSAA 5 cut(s) 134, 203, 393, 435, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 5 cut(s) 65, 118, 248, 308, 448
AluI AGCT 5 cut(s) 65, 118, 248, 308, 448
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 3 cut(s) 323, 557, 619
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 275, 346
ApeKI GCWGC 2 cut(s) 65, 305
AspS9I GGNCC 2 cut(s) 275, 322
AsuHPI GGTGA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 52, 317
BccI CCATC 4 cut(s) 49, 188, 338, 374
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 368
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 2 cut(s) 66, 306
BlsI GCNGC 2 cut(s) 67, 307
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 275, 322
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 2 cut(s) 133, 603
BpuEI CTTGAG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 561
BseCI ATCGAT 1 cut(s) 342
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 52, 317
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 2 cut(s) 277, 348
BshVI ATCGAT 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 2 cut(s) 277, 348
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 328, 339, 562, 624
BspACI CCGC 2 cut(s) 10, 297
BspANI GGCC 2 cut(s) 277, 348
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 372
BspPI GGATC 3 cut(s) 323, 557, 619
BspTNI GGTCTC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 299
BssMI GATC 4 cut(s) 328, 339, 562, 624
Bst4CI ACNGT 1 cut(s) 533
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 4 cut(s) 331, 342, 565, 627
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 4 cut(s) 328, 339, 562, 624
BstMWI GCNNNNNNNGC 3 cut(s) 245, 283, 305
BstSFI CTRYAG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 52, 317
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 2 cut(s) 277, 348
BsuTUI ATCGAT 1 cut(s) 342
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 342, 538
Cfr13I GGNCC 2 cut(s) 275, 322
ClaI ATCGAT 1 cut(s) 342
CviAII CATG 3 cut(s) 319, 326, 582
DpnI GATC 4 cut(s) 330, 341, 564, 626
DpnII GATC 4 cut(s) 328, 339, 562, 624
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 300
EcoT22I ATGCAT 2 cut(s) 551, 583
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 3 cut(s) 322, 329, 585
FaiI YATR 9 cut(s) 8, 114, 163, 263, 320, 327, 408, 444, 583
FatI CATG 3 cut(s) 318, 325, 581
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 66, 306
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 66, 306
FspBI CTAG 1 cut(s) 350
GluI GCNGC 2 cut(s) 66, 306
HaeIII GGCC 2 cut(s) 277, 348
Hin1II CATG 3 cut(s) 322, 329, 585
HphI GGTGA 1 cut(s) 487
Hpy188I TCNGA 6 cut(s) 54, 151, 187, 363, 556, 589
Hpy188III TCNNGA 3 cut(s) 178, 219, 393
HpyAV CCTTC 3 cut(s) 197, 367, 465
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 5 cut(s) 370, 506, 536, 549, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 283, 305
Hsp92II CATG 3 cut(s) 322, 329, 585
Kzo9I GATC 4 cut(s) 328, 339, 562, 624
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 191, 257, 345, 424
Lsp1109I GCAGC 2 cut(s) 52, 317
LweI GCATC 2 cut(s) 133, 603
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 527
MalI GATC 4 cut(s) 330, 341, 564, 626
MbiI CCGCTC 1 cut(s) 299
MboI GATC 4 cut(s) 328, 339, 562, 624
MboII GAAGA 6 cut(s) 26, 203, 389, 420, 423, 490
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 501, 598
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 2 cut(s) 53, 379
Mph1103I ATGCAT 2 cut(s) 551, 583
MwoI GCNNNNNNNGC 3 cut(s) 245, 283, 305
NdeII GATC 4 cut(s) 328, 339, 562, 624
NlaIII CATG 3 cut(s) 322, 329, 585
NlaIV GGNNCC 1 cut(s) 276
NsiI ATGCAT 2 cut(s) 551, 583
PaeR7I CTCGAG 1 cut(s) 300
PkrI GCNGC 2 cut(s) 67, 307
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 275, 322
PspXI VCTCGAGB 1 cut(s) 300
PstI CTGCAG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 624
SatI GCNGC 2 cut(s) 66, 306
Sau3AI GATC 4 cut(s) 328, 339, 562, 624
Sau96I GGNCC 2 cut(s) 275, 322
SduI GDGCHC 1 cut(s) 226
SetI ASST 5 cut(s) 67, 120, 250, 310, 450
SfaNI GCATC 2 cut(s) 133, 603
SfcI CTRYAG 1 cut(s) 368
Sfr274I CTCGAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 119, 300
SmoI CTYRAG 2 cut(s) 119, 300
Sse9I AATT 2 cut(s) 501, 598
SsiI CCGC 2 cut(s) 10, 297
SspMI CTAG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 301, 342
TasI AATT 2 cut(s) 501, 598
TscAI CASTG 2 cut(s) 342, 538
TseI GCWGC 2 cut(s) 65, 305
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 342, 538
VpaK11BI GGWCC 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 300
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 2 cut(s) 551, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.