Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Reverse (-)

18201474 .. 18201926

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTTACGTCTACCTCTTCAAGTACATCATCATTGGCGACACAGGTGTAGGGAAATTGTGCCTGCTCTTGAATTTCACAGACAAGAGGTTTCGGCCCGAGCATGATGTCACCATTGGTGTTGAGTTTGGCACTCGCATGGTCACTATTGAGGGTAAACCCATCAAGCTCAATATATGGGACACTGCTGGACAAGAAGCTTTTAGATCCATCACTATATCTTTCTACAGAGGAGGAGCTGGAGCACTTCTGGTTTTCAACGTAACCAGGAGGGAGACATTTAGAAATCTCACGAAATGGCTAGAGGATACAAGGCAGCATGTAAATCGTAACATCACAATCATGCTCATAGGGAACAAGTGTGATCTTGCTCATAAAAAGGTTGTCAGAAGAAAGGAAGGGGAGCAATTCGCAAAGGAGAATGGACTTCTATACTTGGAAACATCGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

150

Amino Acids

17.31

Weight (kDa)

9.58

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 149	4.8e-53	Ras family
Roc	PF08477	8 - 122	7.5e-31	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	8 - 126	2.7e-08	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	22, 73, 259
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	169, 200, 239
AluI	AGCT	3 cut(s)	169, 200, 239
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	170, 218
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	246, 249
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	206, 364
BspANI	GGCC	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	446
BspPI	GGATC	1 cut(s)	201
BssMI	GATC	2 cut(s)	206, 364
Bst2UI	CCWGG	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	209, 367
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	206, 364
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	97
BsuTUI	ATCGAT	1 cut(s)	446
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	104, 139, 320, 343
CviJI	RGCY	5 cut(s)	97, 169, 200, 239, 301
CviKI_1	RGCY	5 cut(s)	97, 169, 200, 239, 301
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	208, 366
DpnII	GATC	2 cut(s)	206, 364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	266
FaeI	CATG	4 cut(s)	107, 142, 323, 346
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	103, 138, 319, 342
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	107, 142, 323, 346
HindIII	AAGCTT	1 cut(s)	198
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	13, 158
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	2 cut(s)	70, 292
Hpy8I	GTNNAC	2 cut(s)	13, 158
HpyAV	CCTTC	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	9, 261
HpySE526I	ACGT	2 cut(s)	9, 261
Hsp92II	CATG	4 cut(s)	107, 142, 323, 346
Kzo9I	GATC	2 cut(s)	206, 364
LmnI	GCTCC	3 cut(s)	236, 242, 403
LpnPI	CCDG	7 cut(s)	30, 77, 174, 225, 236, 253, 280
Lsp1109I	GCAGC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	9, 261
MaeIII	GTNAC	4 cut(s)	109, 142, 262, 329
MalI	GATC	2 cut(s)	208, 366
MboI	GATC	2 cut(s)	206, 364
MboII	GAAGA	2 cut(s)	10, 402
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	3 cut(s)	56, 73, 407
MnlI	CCTC	7 cut(s)	26, 81, 145, 224, 227, 264, 298
MslI	CAYNNNNRTG	2 cut(s)	137, 341
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	206, 364
NlaIII	CATG	4 cut(s)	107, 142, 323, 346
NmuCI	GTSAC	2 cut(s)	109, 142
NspI	RCATGY	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	137, 341
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	2 cut(s)	206, 364
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	9 cut(s)	12, 18, 49, 92, 171, 202, 241, 264, 384
SfcI	CTRYAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	137, 341
Sse9I	AATT	3 cut(s)	56, 73, 407
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	266
TaiI	ACGT	2 cut(s)	12, 264
TaqI	TCGA	1 cut(s)	446
TasI	AATT	3 cut(s)	56, 73, 407
TatI	WGTACW	1 cut(s)	24
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	109, 142
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	109, 142
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.