Rmu_ssc0000240.1_g000018

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000240.1
OG0008224
Physical Location & Seq
Forward (+)
54379 .. 54819
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000240.1_g000018.1.cds

Sequence Viewer

Length: 441 bp
atgggctgcagtgctggaatcttgtcaatttgtttggccaaagatcttctcaaagtgcttaaaaactcattggcaatagtcctcagcatggaagctgtaacttccaatggctatgagggtaagaaaaaatcaatgcttcttccaaacatcttgtttcggatgggaggagctgctattctactatcgaataggaagcaagacaagggaatggcaaagtatgagcttgagcatctttttcaaacccacattggttcggatgacgaagcataccaatctgttttccagaaatcagatgaagatggagttgaaggggtctcactatcaagagccctactaaatgtggcaacaaaagctctaaaaacaaacatatcatctctgaggccacttgtgctaccacactccaatcgagcagcttcggttctcatggtccatgatccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

8.91

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 239, 308
AluBI AGCT 5 cut(s) 95, 170, 223, 353, 413
AluI AGCT 5 cut(s) 95, 170, 223, 353, 413
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 36, 380
ApeKI GCWGC 3 cut(s) 6, 170, 410
AspS9I GGNCC 1 cut(s) 427
AvaII GGWCC 1 cut(s) 427
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 157, 422
BccI CCATC 2 cut(s) 154, 293
BcoDI GTCTC 1 cut(s) 319
BfmI CTRYAG 1 cut(s) 7
BglII AGATCT 1 cut(s) 43
BisI GCNGC 3 cut(s) 7, 171, 411
BlsI GCNGC 3 cut(s) 8, 172, 412
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmsI GCATC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 165, 262
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 97, 368
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 157, 422
BshFI GGCC 2 cut(s) 38, 382
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 2 cut(s) 38, 382
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 43, 433
BspANI GGCC 2 cut(s) 38, 382
BspCNI CTCAG 2 cut(s) 96, 369
BspMAI CTGCAG 1 cut(s) 11
BspPI GGATC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 319
BssMI GATC 2 cut(s) 43, 433
BstDEI CTNAG 2 cut(s) 83, 377
BstF5I GGATG 2 cut(s) 165, 262
BstKTI GATC 2 cut(s) 46, 436
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 43, 433
BstMWI GCNNNNNNNGC 2 cut(s) 350, 388
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 157, 422
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 2 cut(s) 38, 382
BtsCI GGATG 2 cut(s) 165, 262
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 427
CviAII CATG 3 cut(s) 88, 424, 431
DdeI CTNAG 2 cut(s) 83, 377
DpnI GATC 2 cut(s) 45, 435
DpnII GATC 2 cut(s) 43, 433
EaeI YGGCCR 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 3 cut(s) 91, 427, 434
FaiI YATR 7 cut(s) 89, 114, 219, 268, 368, 425, 432
FatI CATG 3 cut(s) 87, 423, 430
Fnu4HI GCNGC 3 cut(s) 7, 171, 411
FokI GGATG 2 cut(s) 172, 269
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 3 cut(s) 7, 171, 411
GluI GCNGC 3 cut(s) 7, 171, 411
HaeIII GGCC 2 cut(s) 38, 382
Hin1II CATG 3 cut(s) 91, 427, 434
HinfI GANTC 1 cut(s) 18
Hpy188I TCNGA 4 cut(s) 159, 256, 292, 378
Hpy188III TCNNGA 2 cut(s) 283, 324
HpyAV CCTTC 1 cut(s) 302
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 388
HpyF3I CTNAG 2 cut(s) 83, 377
Hsp92II CATG 3 cut(s) 91, 427, 434
Kzo9I GATC 2 cut(s) 43, 433
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 157, 422
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 45, 435
MboI GATC 2 cut(s) 43, 433
MboII GAAGA 3 cut(s) 38, 131, 308
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 331
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 4 cut(s) 92, 109, 158, 372
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 350, 388
NdeII GATC 2 cut(s) 43, 433
NlaIII CATG 3 cut(s) 91, 427, 434
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 8, 172, 412
PspPI GGNCC 1 cut(s) 427
PstI CTGCAG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 43
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 7, 171, 411
Sau3AI GATC 2 cut(s) 43, 433
Sau96I GGNCC 1 cut(s) 427
SduI GDGCHC 1 cut(s) 331
SetI ASST 5 cut(s) 97, 172, 225, 355, 415
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 27
TaqI TCGA 2 cut(s) 185, 406
TasI AATT 1 cut(s) 27
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 16
TseI GCWGC 3 cut(s) 6, 170, 410
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.