Rh7DG345400

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008224
Physical Location & Seq
Forward (+)
45701290 .. 45701802
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG345400.1

Sequence Viewer

Length: 513 bp
ATGAAAACAAAAGCATTCAAAGTTGACATGGAGACTTGGCTGCTTAGACCATTCTCATCTGTCACTACAGAATCATTTCCGATTTCCTTCACTCATTTGTTAGCTGGAACCACTTTGATCATTGCAGTTCTCCTTTTAAAATTCACATCCAAGAGGATATATCTAATTGATTTCACCTGCTATCTGCCTCCTGGTAGATTGCGGGTTCCAAAGTCGCACTTCATCGAACATGTGGAGCTGTCTAACATCAATGGCAGAGAGGGTATCGACTTTCATGTCAAGGTATCGGAAAGATCAGGCATTGGATCAGGGACTTGCACGCCTACTTCATTGCACGAGATCCCGCCTCGTGGGTCTTTGGATGATACTCGAAAAGAAGTTGAAATGGTTCTCTTCACTGTTGTGGAAGACCTTCTTTCCAAGCACAAAGTAGATCCTAAAAGCATTGAGATTCTTGTGTCAAACAGTCAAACTGCAGCATTTTCTGCTCAACACCATCCATTAGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

170

Amino Acids

19.04

Weight (kDa)

7.86

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 49 - 157 3.1e-28 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
AasI GACNNNNNNGTC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 185
AciI CCGC 2 cut(s) 202, 344
AclWI GGATC 3 cut(s) 313, 334, 428
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 2 cut(s) 19, 383
AjnI CCWGG 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 2 cut(s) 104, 238
AluI AGCT 2 cut(s) 104, 238
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 3 cut(s) 313, 334, 428
ApeKI GCWGC 2 cut(s) 40, 476
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 3 cut(s) 75, 387, 411
AsuHPI GGTGA 1 cut(s) 166
BauI CACGAG 2 cut(s) 335, 348
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 27, 488
BccI CCATC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 66, 474
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 2 cut(s) 41, 477
BlsI GCNGC 2 cut(s) 42, 478
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 109, 207
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 120, 329
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 3 cut(s) 146, 367, 496
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 2 cut(s) 120, 329
BseXI GCAGC 2 cut(s) 27, 488
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 14
Bsp143I GATC 5 cut(s) 117, 293, 305, 339, 433
BspACI CCGC 2 cut(s) 202, 344
BspLI GGNNCC 2 cut(s) 109, 207
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 313, 334, 428
BsrDI GCAATG 2 cut(s) 120, 329
BssMI GATC 5 cut(s) 117, 293, 305, 339, 433
BssSI CACGAG 2 cut(s) 335, 348
Bst2BI CACGAG 2 cut(s) 335, 348
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 400, 467
Bst6I CTCTTC 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 3 cut(s) 146, 367, 496
BstKTI GATC 5 cut(s) 120, 296, 308, 342, 436
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 5 cut(s) 117, 293, 305, 339, 433
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 2 cut(s) 66, 474
BstV1I GCAGC 2 cut(s) 27, 488
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 2 cut(s) 339, 433
BstYI RGATCY 2 cut(s) 339, 433
BtsCI GGATG 3 cut(s) 146, 367, 496
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 320
CviAII CATG 3 cut(s) 28, 230, 275
CviJI RGCY 3 cut(s) 40, 104, 238
CviKI_1 RGCY 3 cut(s) 40, 104, 238
DdeI CTNAG 1 cut(s) 44
DpnI GATC 5 cut(s) 119, 295, 307, 341, 435
DpnII GATC 5 cut(s) 117, 293, 305, 339, 433
DraI TTTAAA 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 31, 233, 278
FaiI YATR 5 cut(s) 29, 160, 231, 276, 511
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 399, 431
FaqI GGGAC 1 cut(s) 325
FatI CATG 3 cut(s) 27, 229, 274
FauI CCCGC 2 cut(s) 195, 351
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 41, 477
FokI GGATG 3 cut(s) 133, 374, 483
Fsp4HI GCNGC 2 cut(s) 41, 477
GluI GCNGC 2 cut(s) 41, 477
Hin1II CATG 3 cut(s) 31, 233, 278
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 71, 451
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 81, 289
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 97, 422
HpyCH4III ACNGT 2 cut(s) 400, 467
HpyCH4V TGCA 4 cut(s) 125, 318, 334, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 3 cut(s) 31, 233, 278
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 5 cut(s) 117, 293, 305, 339, 433
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 90, 177, 190, 204, 282, 294
Lsp1109I GCAGC 2 cut(s) 27, 488
MaeIII GTNAC 1 cut(s) 61
MalI GATC 5 cut(s) 119, 295, 307, 341, 435
MboI GATC 5 cut(s) 117, 293, 305, 339, 433
MboII GAAGA 2 cut(s) 385, 419
MflI RGATCY 2 cut(s) 339, 433
MluCI AATT 2 cut(s) 140, 165
MnlI CCTC 4 cut(s) 147, 198, 253, 357
MroXI GAANNNNTTC 3 cut(s) 75, 387, 411
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 5 cut(s) 117, 293, 305, 339, 433
NlaIII CATG 3 cut(s) 31, 233, 278
NlaIV GGNNCC 2 cut(s) 109, 207
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 401
PaqCI CACCTGC 1 cut(s) 185
PciI ACATGT 1 cut(s) 229
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 3 cut(s) 75, 387, 411
PfeI GAWTC 2 cut(s) 71, 451
PkrI GCNGC 2 cut(s) 42, 478
PscI ACATGT 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 109, 207
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 339, 433
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 41, 477
Sau3AI GATC 5 cut(s) 117, 293, 305, 339, 433
ScrFI CCNGG 1 cut(s) 192
SetI ASST 5 cut(s) 106, 179, 240, 285, 414
SfcI CTRYAG 2 cut(s) 66, 474
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 2 cut(s) 140, 165
SsiI CCGC 2 cut(s) 202, 344
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 400, 467
TaqI TCGA 3 cut(s) 225, 267, 370
TasI AATT 2 cut(s) 140, 165
TfiI GAWTC 2 cut(s) 71, 451
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 40, 476
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 17, 211, 263, 318
TspRI CASTG 1 cut(s) 403
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 3 cut(s) 75, 387, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.