Rh7BG338200

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008224
Physical Location & Seq
Forward (+)
35325573 .. 35325914
342 bp
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UTR
Exon/CDS
Intron
Rh7BG338200.1

Sequence Viewer

Length: 342 bp
ATGGAGACTTGGCTGCTTAGACCATTCTCATCTGTCACTACAGAATCATTTCCGATTTCCTTCACTCATTTGTTAGCTGGAACCACTTTGATCACAGTTCTCCTTTTAAAATTCACATCCAAGAGGATATATCTAATTGATTTCACCTGCTATCTGCCTCCTGGTAGATTGCGGGTTCCAAAGTCGCACTTCATCGAACATGTGAAGCTGTCTAACGTCAATGGCAGAGAGGGTATCGACTTCCAAGTCAAGGTATTGGAAAGATCAGGCATTGGATCAGAGACTTGCACGCCTACTTCATTGCACGAGATCCCGCCTCGTGTGTCTTTGGATGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

7.85

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 39 - 111 5.8e-17 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 155
AciI CCGC 2 cut(s) 172, 314
AclWI GGATC 2 cut(s) 283, 304
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 199
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 77, 208
AluI AGCT 2 cut(s) 77, 208
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 283, 304
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 136
BauI CACGAG 2 cut(s) 305, 318
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 82, 177
BmrFI CCNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 116, 337
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 275
Bsp143I GATC 4 cut(s) 90, 263, 275, 309
BspACI CCGC 2 cut(s) 172, 314
BspLI GGNNCC 2 cut(s) 82, 177
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 283, 304
BsrDI GCAATG 1 cut(s) 299
BssMI GATC 4 cut(s) 90, 263, 275, 309
BssSI CACGAG 2 cut(s) 305, 318
Bst2BI CACGAG 2 cut(s) 305, 318
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 116, 337
BstKTI GATC 4 cut(s) 93, 266, 278, 312
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 4 cut(s) 90, 263, 275, 309
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BtsCI GGATG 2 cut(s) 116, 337
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 290
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 13, 77, 208
CviKI_1 RGCY 3 cut(s) 13, 77, 208
DdeI CTNAG 1 cut(s) 17
DpnI GATC 4 cut(s) 92, 265, 277, 311
DpnII GATC 4 cut(s) 90, 263, 275, 309
DraI TTTAAA 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 203
FaiI YATR 2 cut(s) 130, 201
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 1 cut(s) 199
FauI CCCGC 2 cut(s) 165, 321
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 54, 280
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 288, 304
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 90, 263, 275, 309
LpnPI CCDG 5 cut(s) 63, 147, 160, 174, 252
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 34
MalI GATC 4 cut(s) 92, 265, 277, 311
MboI GATC 4 cut(s) 90, 263, 275, 309
MflI RGATCY 1 cut(s) 309
MluCI AATT 2 cut(s) 110, 135
MnlI CCTC 4 cut(s) 117, 168, 223, 327
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
NdeII GATC 4 cut(s) 90, 263, 275, 309
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 82, 177
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 155
PciI ACATGT 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 15
PscI ACATGT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 82, 177
PsuI RGATCY 1 cut(s) 309
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 90, 263, 275, 309
ScrFI CCNGG 1 cut(s) 162
SetI ASST 5 cut(s) 79, 149, 210, 219, 255
SfcI CTRYAG 1 cut(s) 39
Sse9I AATT 2 cut(s) 110, 135
SsiI CCGC 2 cut(s) 172, 314
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 195, 237
TasI AATT 2 cut(s) 110, 135
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 181, 288
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.