Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Reverse (-)

46447021 .. 46448373

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G569700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAGACTGCGCTGCTTAGATCTTTTTCATTTATCATTCCTGAATCTCCAATCTCCCTCACCCATTTCTTAGCTGCAACTATTCTGATAATAGTGGTTCTCTGTTTTACATTCAGATCTAAGAGTACATACCTTATCGACTTCACCTGCTATCGGCCTCCAGAAAGCTTGCGGATTGCGAAAGAAAGCTACATCGAACACATTGAAATGAGTAAACTCTACGACAAAGAAACCTACAGTTTCCAAGTGAAGGTATTGGAAAGATCAGGAATTGGAGATGAGAGTTGCGTGCCTATTGCGCTGCATGAGCTCCCTCCTCATTCTTCTTTGCACGCTGCTAGAAAAGAAACTGAAATGGTTCTCTTCTCAGTCGTCAAAGACCTTCTTTCCAAGCACAAAATAAATCCTAAAAGCATCGACATTCTTGTGTCCAACTGTAGCCTTTTTTGCCCTACCCCTTCCATTACATCTATGGTCATAAACAAGTTTGGATTCCGAAGCAACATAAAGAGCGTCAACCTCAGTGGAATGGGTTGCAGTGCTGGAATCTTGTCTATCAGTTTGGCTAAAGATCTGCTAAAAGTTCACCAGAACTCCTTGGCTTTAGTTCTCAGCATGGAAGCTATGACTCCTAATGGTTATATGGGTACCAAAAAATCCATGCTTCTTCCAAACCTTTTGTTTCGGATGGGAGGAGCTGCTATTCTATTATCCAGCAGGAAAAGGGACAAGCGAATAGCTAAGTACGAGCTCCAGCACATTGTCCGAACCCACATTGGTTCGGATGATGAAGCATACCAATCTGTCTTCCAGCAACTCGATGAAGCTGGACATGTAGGGGTCTCACTGTCACGGGCACTTATACCTGTGGCAACAAAAGCACTCAGAACTAACATATCCAAGTTGGGACCTCTAGTGCTACCATATTCTGAGCAGCTACGATATGTATGGTCAATCATCCACAAAAAAGTCTTGTTATTACCGAGCCAGAAGAAAATTTATGCTCCAAATTTCAATAGGGCTCTCCAGCATTTCTGTATACATGCTGGTGGAAGGGCAGTGATTGATGGAATAGTAGATAGTCTCAGGCTGGACAAGGAAGATGGAGAAGCTTCAAGGATGACATTACATAGATTTGGTAATACTTCATCTTCTTCCATTTGGTATGAACTCTGCTATTTGGAGGCAAAAGGAAGAATGAATAAAGGAAATCAGGTTTGGCAAATTGCCTTTGGAAGTGGCTTCAAGTGTAACAGCGCAATTTGGAAATGCATTTCAGATATTGACCCAACAGAACGAAATGCATGGTCAGACAGAACCTACTTGTATCCAATTGATGAGGTCCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

451

Amino Acids

50.48

Weight (kDa)

9.18

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	155
Acc65I	GGTACC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	1039
AciI	CCGC	1 cut(s)	172
AcsI	RAATTY	2 cut(s)	996, 1009
AfaI	GTAC	3 cut(s)	127, 649, 746
AfiI	CCNNNNNNNGG	2 cut(s)	153, 250
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	206, 1015, 1116, 1246
AjuI	GAANNNNNNNTTGG	2 cut(s)	1201, 1233
Alw21I	GWGCWC	2 cut(s)	312, 753
Alw26I	GTCTC	2 cut(s)	847, 1088
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	6 cut(s)	13, 74, 301, 335, 698, 934
ApoI	RAATTY	2 cut(s)	996, 1009
Asp700I	GAANNNNTTC	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	647
AspLEI	GCGC	3 cut(s)	13, 301, 1259
AspS9I	GGNCC	2 cut(s)	908, 1342
AsuHPI	GGTGA	3 cut(s)	52, 136, 578
AvaII	GGWCC	2 cut(s)	908, 1342
BaeGI	GKGCMC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	3 cut(s)	312, 753, 1024
BbsI	GAAGAC	1 cut(s)	799
Bbv12I	GWGCWC	2 cut(s)	312, 753
BbvI	GCAGC	5 cut(s)	61, 288, 322, 685, 946
BccI	CCATC	3 cut(s)	682, 1061, 1097
BciVI	GTATCC	1 cut(s)	1338
BcoDI	GTCTC	2 cut(s)	847, 1088
BfaI	CTAG	2 cut(s)	339, 914
BfmI	CTRYAG	2 cut(s)	235, 436
BfuAI	ACCTGC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	1338
BglII	AGATCT	3 cut(s)	20, 116, 571
BisI	GCNGC	6 cut(s)	14, 75, 302, 336, 699, 935
BlsI	GCNGC	6 cut(s)	15, 76, 303, 337, 700, 936
Bme18I	GGWCC	2 cut(s)	908, 1342
BmgT120I	GGNCC	2 cut(s)	908, 1342
BmiI	GGNNCC	3 cut(s)	649, 909, 1344
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	799
BpmI	CTGGAG	3 cut(s)	144, 737, 1010
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 250
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	4 cut(s)	693, 790, 957, 1125
BseLI	CCNNNNNNNGG	2 cut(s)	153, 250
BseMII	CTCAG	6 cut(s)	381, 535, 625, 898, 921, 1099
BseRI	GAGGAG	2 cut(s)	306, 708
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	5 cut(s)	61, 288, 322, 685, 946
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	647
BsiHKAI	GWGCWC	2 cut(s)	312, 753
BslFI	GGGAC	3 cut(s)	740, 921, 1328
BslI	CCNNNNNNNGG	2 cut(s)	153, 250
BsmAI	GTCTC	2 cut(s)	847, 1088
BsmFI	GGGAC	3 cut(s)	740, 921, 1328
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	847
Bsp1286I	GDGCHC	4 cut(s)	312, 753, 859, 1024
Bsp143I	GATC	4 cut(s)	20, 116, 263, 571
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	6 cut(s)	380, 534, 624, 897, 922, 1098
BspLI	GGNNCC	3 cut(s)	649, 909, 1344
BspMI	ACCTGC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	847
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	4 cut(s)	20, 116, 263, 571
BssNAI	GTATAC	1 cut(s)	1040
BssT1I	CCWWGG	1 cut(s)	597
Bst1107I	GTATAC	1 cut(s)	1040
Bst4CI	ACNGT	3 cut(s)	239, 437, 849
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	170, 290, 333
BstF5I	GGATG	4 cut(s)	693, 790, 957, 1125
BstHHI	GCGC	3 cut(s)	13, 301, 1259
BstKTI	GATC	4 cut(s)	23, 119, 266, 574
BstMAI	GTCTC	2 cut(s)	847, 1088
BstMBI	GATC	4 cut(s)	20, 116, 263, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	298, 307, 447, 878
BstNSI	RCATGY	2 cut(s)	836, 1046
BstSFI	CTRYAG	2 cut(s)	235, 436
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	5 cut(s)	61, 288, 322, 685, 946
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	3 cut(s)	20, 116, 571
BstYI	RGATCY	3 cut(s)	20, 116, 571
BstZ17I	GTATAC	1 cut(s)	1040
BsuI	GTATCC	1 cut(s)	1338
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	693, 790, 957, 1125
BtsI	GCAGTG	2 cut(s)	544, 1065
BtsIMutI	CAGTG	4 cut(s)	529, 544, 845, 1065
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	170, 290, 333
CfoI	GCGC	3 cut(s)	13, 301, 1259
Cfr13I	GGNCC	2 cut(s)	908, 1342
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	126, 648, 745
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	6 cut(s)	305, 616, 661, 833, 1043, 1305
CviQI	GTAC	3 cut(s)	126, 648, 745
DpnI	GATC	4 cut(s)	22, 118, 265, 573
DpnII	GATC	4 cut(s)	20, 116, 263, 571
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	2 cut(s)	310, 751
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	3 cut(s)	312, 753, 1024
Eco31I	GGTCTC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	908, 1342
Eco53kI	GAGCTC	2 cut(s)	310, 751
EcoICRI	GAGCTC	2 cut(s)	310, 751
EcoO109I	RGGNCCY	2 cut(s)	908, 1342
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	2 cut(s)	1274, 1306
EcoT38I	GRGCYC	3 cut(s)	312, 753, 1024
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	6 cut(s)	308, 619, 664, 836, 1046, 1308
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	3 cut(s)	740, 921, 1328
FatI	CATG	6 cut(s)	304, 615, 660, 832, 1042, 1304
FblI	GTMKAC	1 cut(s)	1039
Fnu4HI	GCNGC	6 cut(s)	14, 75, 302, 336, 699, 935
FokI	GGATG	4 cut(s)	700, 797, 944, 1132
FriOI	GRGCYC	3 cut(s)	312, 753, 1024
Fsp4HI	GCNGC	6 cut(s)	14, 75, 302, 336, 699, 935
FspBI	CTAG	2 cut(s)	339, 914
GlaI	GCGC	3 cut(s)	12, 300, 1258
GluI	GCNGC	6 cut(s)	14, 75, 302, 336, 699, 935
GsuI	CTGGAG	3 cut(s)	144, 737, 1010
HaeIII	GGCC	1 cut(s)	157
HgaI	GACGC	1 cut(s)	502
HhaI	GCGC	3 cut(s)	13, 301, 1259
Hin1II	CATG	6 cut(s)	308, 619, 664, 836, 1046, 1308
Hin6I	GCGC	3 cut(s)	11, 299, 1257
HinP1I	GCGC	3 cut(s)	11, 299, 1257
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	166, 1110
HinfI	GANTC	4 cut(s)	44, 492, 546, 628
HphI	GGTGA	3 cut(s)	52, 136, 578
Hpy166II	GTNNAC	4 cut(s)	215, 517, 586, 1040
Hpy188III	TCNNGA	3 cut(s)	41, 161, 267
Hpy8I	GTNNAC	4 cut(s)	215, 517, 586, 1040
HpyAV	CCTTC	4 cut(s)	244, 392, 468, 1047
HpyCH4III	ACNGT	3 cut(s)	239, 437, 849
HpyCH4V	TGCA	6 cut(s)	77, 304, 331, 537, 1272, 1304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	298, 307, 447, 878
Hsp92II	CATG	6 cut(s)	308, 619, 664, 836, 1046, 1308
HspAI	GCGC	3 cut(s)	11, 299, 1257
KpnI	GGTACC	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	20, 116, 263, 571
LmnI	GCTCC	4 cut(s)	315, 695, 756, 1009
Lsp1109I	GCAGC	5 cut(s)	61, 288, 322, 685, 946
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	339, 914
MaeIII	GTNAC	2 cut(s)	849, 1250
MalI	GATC	4 cut(s)	22, 118, 265, 573
MboI	GATC	4 cut(s)	20, 116, 263, 571
MboII	GAAGA	9 cut(s)	315, 355, 659, 799, 1003, 1112, 1143, 1146, 1206
MfeI	CAATTG	1 cut(s)	1332
MflI	RGATCY	3 cut(s)	20, 116, 571
MhlI	GDGCHC	4 cut(s)	312, 753, 859, 1024
MluCI	AATT	6 cut(s)	270, 996, 1009, 1224, 1260, 1332
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	68, 168, 324, 327, 530, 686, 921, 1177, 1333
Mph1103I	ATGCAT	2 cut(s)	1274, 1306
MroXI	GAANNNNTTC	1 cut(s)	357
MslI	CAYNNNNRTG	3 cut(s)	206, 425, 1047
MunI	CAATTG	1 cut(s)	1332
MwoI	GCNNNNNNNGC	4 cut(s)	298, 307, 447, 878
NdeII	GATC	4 cut(s)	20, 116, 263, 571
NlaIII	CATG	6 cut(s)	308, 619, 664, 836, 1046, 1308
NlaIV	GGNNCC	3 cut(s)	649, 909, 1344
NmuCI	GTSAC	1 cut(s)	849
NsiI	ATGCAT	2 cut(s)	1274, 1306
NspI	RCATGY	2 cut(s)	836, 1046
PaqCI	CACCTGC	1 cut(s)	155
PciI	ACATGT	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	44, 492, 546
PkrI	GCNGC	6 cut(s)	15, 76, 303, 337, 700, 936
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PpuMI	RGGWCCY	2 cut(s)	908, 1342
PscI	ACATGT	1 cut(s)	832
Psp124BI	GAGCTC	2 cut(s)	312, 753
Psp5II	RGGWCCY	2 cut(s)	908, 1342
PspN4I	GGNNCC	3 cut(s)	649, 909, 1344
PspPI	GGNCC	2 cut(s)	908, 1342
PspPPI	RGGWCCY	2 cut(s)	908, 1342
PsuI	RGATCY	3 cut(s)	20, 116, 571
RsaI	GTAC	3 cut(s)	127, 649, 746
RsaNI	GTAC	3 cut(s)	126, 648, 745
RseI	CAYNNNNRTG	3 cut(s)	206, 425, 1047
SacI	GAGCTC	2 cut(s)	312, 753
SatI	GCNGC	6 cut(s)	14, 75, 302, 336, 699, 935
Sau3AI	GATC	4 cut(s)	20, 116, 263, 571
Sau96I	GGNCC	2 cut(s)	908, 1342
SchI	GAGTC	1 cut(s)	622
SduI	GDGCHC	4 cut(s)	312, 753, 859, 1024
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	2 cut(s)	235, 436
SinI	GGWCC	2 cut(s)	908, 1342
SmiMI	CAYNNNNRTG	3 cut(s)	206, 425, 1047
Sse9I	AATT	6 cut(s)	270, 996, 1009, 1224, 1260, 1332
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	2 cut(s)	339, 914
SstI	GAGCTC	2 cut(s)	312, 753
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	239, 437, 849
TaqI	TCGA	4 cut(s)	138, 195, 417, 819
TasI	AATT	6 cut(s)	270, 996, 1009, 1224, 1260, 1332
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	44, 492, 546
TscAI	CASTG	4 cut(s)	529, 544, 852, 1065
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	6 cut(s)	13, 74, 301, 335, 698, 934
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	6 cut(s)	18, 804, 837, 1137, 1182, 1214
TspRI	CASTG	4 cut(s)	529, 544, 852, 1065
VpaK11BI	GGWCC	2 cut(s)	908, 1342
XapI	RAATTY	2 cut(s)	996, 1009
XceI	RCATGY	2 cut(s)	836, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	1039
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	339, 914
Zsp2I	ATGCAT	2 cut(s)	1274, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.