Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000240.1

Orthogroup ID

OG0008224

Physical Location & Seq

Genomic Coordinates Forward (+)

53854 .. 54318

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000240.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggagaattgggtgcttagaccattctcatctgtcactacagaatcatttccgatttccttcactcatttgttagctggaaccactttgagcattgcagttctccttttaaaattcacatccaagaggatatatctaattgatttcacctgctatctgcctcctgctagattgcgggttccaaagtcgcacttcatcgaccatgtggagctgtctaacgtcaatggcagagagggtatcgactttcatgtcaaggtattggaaagatcaggcattggatcagagacttgcacgagatcccgcctcgtggatctttggatgatactcgaaaaagaagttgaaatggttctcttcactgttgtggaagaccttctttccaagcacaaagtagatcctaaaagcattgacattcttgtgtcaaacagtcaaactgcagcattttctgctcaacaccatccaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

154

Amino Acids

17.46

Weight (kDa)

6.65

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71160
fragaria_vesca	FvH4_5g29330
malus_domestica	MD08G1230400.v1.1 MD08G1230500.v1.1
prunus_persica	Prupe.1G569700_v2.0.a1 Prupe.1G569800_v2.0.a1 Prupe.1G569900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222201
rosa_laevigata	RLG00000002084
rosa_multiflora	Rmu_ssc0000240.1_g000017 Rmu_ssc0000240.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237310
rosa_rugosa	Rorug07G0206600 Rorug07G0206700
rosa_samantha	Rh7AG347500 Rh7BG338200 Rh7BG338300 Rh7BG338400 Rh7CG364800 Rh7DG345400 Rh7DG345500
rosa_wichuraiana	Rw7G029430 Rw7G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	2 cut(s)	175, 301
AclWI	GGATC	4 cut(s)	286, 291, 318, 386
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	341
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	77, 211
AluI	AGCT	2 cut(s)	77, 211
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	286, 291, 318, 386
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	3 cut(s)	48, 345, 369
AsuHPI	GGTGA	1 cut(s)	139
BauI	CACGAG	2 cut(s)	292, 305
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	39, 432
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	82, 180
BpiI	GAAGAC	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	3 cut(s)	119, 324, 454
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	266, 278, 296, 310, 391
BspACI	CCGC	2 cut(s)	175, 301
BspLI	GGNNCC	2 cut(s)	82, 180
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	4 cut(s)	286, 291, 318, 386
BsrDI	GCAATG	1 cut(s)	93
BssMI	GATC	5 cut(s)	266, 278, 296, 310, 391
BssSI	CACGAG	2 cut(s)	292, 305
Bst2BI	CACGAG	2 cut(s)	292, 305
Bst4CI	ACNGT	2 cut(s)	358, 425
Bst6I	CTCTTC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	119, 324, 454
BstKTI	GATC	5 cut(s)	269, 281, 299, 313, 394
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	5 cut(s)	266, 278, 296, 310, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstSFI	CTRYAG	2 cut(s)	39, 432
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	3 cut(s)	296, 310, 391
BstYI	RGATCY	3 cut(s)	296, 310, 391
BtsCI	GGATG	3 cut(s)	119, 324, 454
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	158
CviAII	CATG	2 cut(s)	203, 248
CviJI	RGCY	2 cut(s)	77, 211
CviKI_1	RGCY	2 cut(s)	77, 211
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	5 cut(s)	268, 280, 298, 312, 393
DpnII	GATC	5 cut(s)	266, 278, 296, 310, 391
DraI	TTTAAA	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
FaeI	CATG	2 cut(s)	206, 251
FaiI	YATR	4 cut(s)	133, 204, 249, 463
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 357, 389
FatI	CATG	2 cut(s)	202, 247
FauI	CCCGC	2 cut(s)	168, 308
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	3 cut(s)	106, 331, 441
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	206, 251
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	54, 283
HpyAV	CCTTC	2 cut(s)	70, 380
HpyCH4III	ACNGT	2 cut(s)	358, 425
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	98, 291, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	206, 251
Kzo9I	GATC	5 cut(s)	266, 278, 296, 310, 391
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	4 cut(s)	63, 163, 177, 255
Lsp1109I	GCAGC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	5 cut(s)	268, 280, 298, 312, 393
MboI	GATC	5 cut(s)	266, 278, 296, 310, 391
MboII	GAAGA	2 cut(s)	343, 377
MflI	RGATCY	3 cut(s)	296, 310, 391
MluCI	AATT	3 cut(s)	7, 113, 138
MnlI	CCTC	4 cut(s)	120, 171, 226, 314
MroXI	GAANNNNTTC	3 cut(s)	48, 345, 369
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	2 cut(s)	359, 413
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	5 cut(s)	266, 278, 296, 310, 391
NlaIII	CATG	2 cut(s)	206, 251
NlaIV	GGNNCC	2 cut(s)	82, 180
NmuCI	GTSAC	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	158
PdmI	GAANNNNTTC	3 cut(s)	48, 345, 369
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	82, 180
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	3 cut(s)	296, 310, 391
RseI	CAYNNNNRTG	2 cut(s)	359, 413
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	5 cut(s)	266, 278, 296, 310, 391
SetI	ASST	6 cut(s)	79, 152, 213, 222, 258, 372
SfcI	CTRYAG	2 cut(s)	39, 432
SmiMI	CAYNNNNRTG	2 cut(s)	359, 413
Sse9I	AATT	3 cut(s)	7, 113, 138
SsiI	CCGC	2 cut(s)	175, 301
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	358, 425
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	198, 240, 327
TasI	AATT	3 cut(s)	7, 113, 138
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	184, 236
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	113
XmnI	GAANNNNTTC	3 cut(s)	48, 345, 369
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.