Rw7G029870

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008224
Physical Location & Seq
Reverse (-)
41840444 .. 41841817
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029870.1

Sequence Viewer

Length: 1146 bp
ATGGAGACTTGGCTGCTTAGACCATTCTCATCTGTCACTACAGAATCATTTCCGATTTCCTTCACTCATTTGTTAGCTGGAACCACTTTGATCATTGCAGTTCTCCTTTTAAAATTCACATCCAAGAGGATATATCTAATTAATTTCACCTGCTATCTGCCTCCTGGTAGATTGCGGGTTCCAAAGTCGCACTTCATCGAACATGTGGAGCTGTCTAACGTCAATGGCAGAGAGGGTATCGACTTTCATGTCAAGGTATTGGAAAGATCAGGCATTGGATCAGAGACTTGCCCGCCTACTTCATTGCACGAGATCCCGCCTCGTGGATCTTTGGATGATACTCGAAAAAGAATTTGGATTTCGAAGCAAATAAAGAGCGTCAACCTCAGTGGAATGGGCTGCAGTGCTGGAATCTTGTCAATTTGTTTGGCCAAAGATCTTCTCAAAGTGCTTAAAAACTCATTGGCAATAGTCCTCAGCATGGAAGCTGTAACTTCCAATGGCTATGCGGGTAAGAAAAAATCAATGCTTCTTCCAAACATCTTGTTTCGGATGGGAGGAGCTGCTATTCTACTATCGAATAGGAAGCAAGACAAGGGAATGGCAAAGTATGAGCTTGAGCATCTTGTTCAAACCCACATTGGTTCGGATGACGAAGCATACCAATCTGTTTTCCAGAAGTCAGATGAAGATGGAGTTGAAGGGGTCTCACTATCAAGAGCCCTACTAAATGTGGCAACAAAAGCTCTAAAAACAAACATATCATCTCTGAGGCCACTTGTGCTACCACACTCCGATCGAGCAGCTTCGAAGGGAGCTTATGTGCCAAATTTCAAGAAGGCGATCCAACATTTCTGTATATATGCTGGTGGAAGAGCAGTGATCGATGGCCTAGAGCAAAGTCTAAAACTGCAGAAGGAAGATGGAGAGGCTTCAAGAATGACATTACATAGATTTGGAAACACATCATCTTCTTCAATCTGGGTGAAGAAAAGAAACAAAGTTTGGCAAATTACATTTGGAAGTGGCTTCAAGTTTAACAGTGCAGTTTGGAAATGCATTTCAGATGTTGATCCAACAAAAAGAAATCCATGGTCAGACAGCATCAATTTGTATCCTATTATTGATAATGAGATCCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

381

Amino Acids

42.26

Weight (kDa)

9.55

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 40 - 116 7.2e-15 FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA PF08392 120 - 267 9.6e-62 FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_C PF02797 285 - 328 2.4e-06 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 158
AciI CCGC 4 cut(s) 175, 293, 317, 509
AclWI GGATC 6 cut(s) 286, 307, 334, 838, 1067, 1129
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 3 cut(s) 113, 351, 829
AfiI CCNNNNNNNGG 2 cut(s) 323, 481
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 6 cut(s) 632, 701, 835, 936, 978, 1033
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 4 cut(s) 337, 369, 988, 1020
AluBI AGCT 8 cut(s) 77, 211, 488, 563, 616, 746, 806, 818
AluI AGCT 8 cut(s) 77, 211, 488, 563, 616, 746, 806, 818
Alw26I GTCTC 2 cut(s) 278, 712
AlwI GGATC 6 cut(s) 286, 307, 334, 838, 1067, 1129
AoxI GGCC 3 cut(s) 429, 773, 889
ApeKI GCWGC 4 cut(s) 13, 399, 563, 803
ApoI RAATTY 3 cut(s) 113, 351, 829
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 139, 997
AsuII TTCGAA 2 cut(s) 362, 809
BalI TGGCCA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 724
BauI CACGAG 2 cut(s) 308, 321
BbvCI CCTCAGC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 386, 550, 815
BccI CCATC 4 cut(s) 547, 686, 881, 917
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 1125
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 278, 712
BfaI CTAG 1 cut(s) 893
BfmI CTRYAG 3 cut(s) 39, 400, 911
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 1125
BglII AGATCT 1 cut(s) 436
BisI GCNGC 4 cut(s) 14, 400, 564, 804
BlsI GCNGC 4 cut(s) 15, 401, 565, 805
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 82, 180
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 631, 1113
Bpu10I CCTNAGC 1 cut(s) 476
Bpu14I TTCGAA 2 cut(s) 362, 809
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 885
BsaBI GATNNNNATC 1 cut(s) 1071
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 1 cut(s) 1091
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 481
Bse3DI GCAATG 2 cut(s) 93, 302
Bse8I GATNNNNATC 1 cut(s) 1071
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 1 cut(s) 1091
BseGI GGATG 4 cut(s) 119, 340, 558, 655
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 2 cut(s) 323, 481
BseMI GCAATG 2 cut(s) 93, 302
BseMII CTCAG 3 cut(s) 400, 490, 761
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 3 cut(s) 386, 550, 815
BsgI GTGCAG 1 cut(s) 1065
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 3 cut(s) 431, 775, 891
BshVI ATCGAT 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 799
BslI CCNNNNNNNGG 2 cut(s) 323, 481
BsmAI GTCTC 2 cut(s) 278, 712
BsnI GGCC 3 cut(s) 431, 775, 891
Bso31I GGTCTC 1 cut(s) 712
Bsp119I TTCGAA 2 cut(s) 362, 809
Bsp1286I GDGCHC 1 cut(s) 724
Bsp19I CCATGG 1 cut(s) 1091
BspACI CCGC 4 cut(s) 175, 293, 317, 509
BspANI GGCC 3 cut(s) 431, 775, 891
BspCNI CTCAG 3 cut(s) 399, 489, 762
BspDI ATCGAT 1 cut(s) 885
BspLI GGNNCC 2 cut(s) 82, 180
BspMAI CTGCAG 2 cut(s) 404, 915
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 6 cut(s) 286, 307, 334, 838, 1067, 1129
BspQI GCTCTTC 1 cut(s) 868
BspT104I TTCGAA 2 cut(s) 362, 809
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 2 cut(s) 93, 302
BssECI CCNNGG 1 cut(s) 1091
BssSI CACGAG 2 cut(s) 308, 321
BssT1I CCWWGG 1 cut(s) 1091
Bst2BI CACGAG 2 cut(s) 308, 321
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 1043
Bst6I CTCTTC 1 cut(s) 868
BstBI TTCGAA 2 cut(s) 362, 809
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 17, 386, 476, 770
BstDSI CCRYGG 1 cut(s) 1091
BstF5I GGATG 4 cut(s) 119, 340, 558, 655
BstMAI GTCTC 2 cut(s) 278, 712
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 2 cut(s) 743, 781
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 3 cut(s) 39, 400, 911
BstV1I GCAGC 3 cut(s) 386, 550, 815
BstX2I RGATCY 4 cut(s) 312, 326, 436, 1134
BstYI RGATCY 4 cut(s) 312, 326, 436, 1134
Bsu15I ATCGAT 1 cut(s) 885
BsuI GTATCC 1 cut(s) 1125
BsuRI GGCC 3 cut(s) 431, 775, 891
BsuTUI ATCGAT 1 cut(s) 885
BtgI CCRYGG 1 cut(s) 1091
BtsCI GGATG 4 cut(s) 119, 340, 558, 655
BtsI GCAGTG 2 cut(s) 409, 885
BtsIMutI CAGTG 4 cut(s) 394, 409, 885, 1048
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 293
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 4 cut(s) 203, 248, 481, 1092
DdeI CTNAG 4 cut(s) 17, 386, 476, 770
DraI TTTAAA 1 cut(s) 111
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 868
EarI CTCTTC 1 cut(s) 868
Eco130I CCWWGG 1 cut(s) 1091
Eco24I GRGCYC 1 cut(s) 724
Eco31I GGTCTC 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 1091
EcoT22I ATGCAT 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 1091
FaeI CATG 4 cut(s) 206, 251, 484, 1095
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 4 cut(s) 202, 247, 480, 1091
FauI CCCGC 4 cut(s) 168, 300, 324, 502
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 14, 400, 564, 804
FokI GGATG 4 cut(s) 106, 347, 565, 662
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 4 cut(s) 14, 400, 564, 804
FspBI CTAG 1 cut(s) 893
GluI GCNGC 4 cut(s) 14, 400, 564, 804
HaeIII GGCC 3 cut(s) 431, 775, 891
HgaI GACGC 1 cut(s) 367
Hin1II CATG 4 cut(s) 206, 251, 484, 1095
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 44, 411
HphI GGTGA 2 cut(s) 139, 997
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 9 cut(s) 54, 283, 552, 649, 685, 771, 796, 1066, 1099
Hpy188III TCNNGA 4 cut(s) 676, 717, 835, 936
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 5 cut(s) 70, 695, 805, 832, 910
HpyCH4III ACNGT 1 cut(s) 1043
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 98, 307, 402, 913, 1046, 1059
HpyF10VI GCNNNNNNNGC 2 cut(s) 743, 781
HpyF3I CTNAG 4 cut(s) 17, 386, 476, 770
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 4 cut(s) 206, 251, 484, 1095
Ksp22I TGATCA 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 3 cut(s) 208, 560, 815
LpnPI CCDG 9 cut(s) 63, 150, 163, 177, 255, 393, 689, 852, 967
Lsp1109I GCAGC 3 cut(s) 386, 550, 815
LweI GCATC 2 cut(s) 631, 1113
MaeI CTAG 1 cut(s) 893
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 34, 490
MboII GAAGA 8 cut(s) 431, 524, 701, 885, 932, 963, 966, 1000
MflI RGATCY 4 cut(s) 312, 326, 436, 1134
MhlI GDGCHC 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 8 cut(s) 113, 138, 142, 351, 420, 829, 1011, 1108
MluNI TGGCCA 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 871, 1100
MnlI CCTC 9 cut(s) 120, 171, 226, 330, 395, 485, 551, 765, 922
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 1061
MroXI GAANNNNTTC 1 cut(s) 48
MscI TGGCCA 1 cut(s) 431
MseI TTAA 4 cut(s) 110, 141, 453, 1038
Msp20I TGGCCA 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 743, 781
NcoI CCATGG 1 cut(s) 1091
NlaIII CATG 4 cut(s) 206, 251, 484, 1095
NlaIV GGNNCC 2 cut(s) 82, 180
NmuCI GTSAC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 1061
NspI RCATGY 1 cut(s) 206
NspV TTCGAA 2 cut(s) 362, 809
PaqCI CACCTGC 1 cut(s) 158
PciI ACATGT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 44, 411
PkrI GCNGC 4 cut(s) 15, 401, 565, 805
Ple19I CGATCG 1 cut(s) 799
PscI ACATGT 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 82, 180
PstI CTGCAG 2 cut(s) 404, 915
PsuI RGATCY 4 cut(s) 312, 326, 436, 1134
PvuI CGATCG 1 cut(s) 799
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 4 cut(s) 110, 141, 453, 1038
SatI GCNGC 4 cut(s) 14, 400, 564, 804
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 2 cut(s) 631, 1113
SfcI CTRYAG 3 cut(s) 39, 400, 911
SfuI TTCGAA 2 cut(s) 362, 809
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 8 cut(s) 113, 138, 142, 351, 420, 829, 1011, 1108
SsiI CCGC 4 cut(s) 175, 293, 317, 509
SspMI CTAG 1 cut(s) 893
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 1091
TaaI ACNGT 1 cut(s) 1043
TaiI ACGT 1 cut(s) 222
TaqI TCGA 8 cut(s) 198, 240, 343, 362, 578, 799, 809, 885
TasI AATT 8 cut(s) 113, 138, 142, 351, 420, 829, 1011, 1108
TfiI GAWTC 2 cut(s) 44, 411
Tru1I TTAA 4 cut(s) 110, 141, 453, 1038
Tru9I TTAA 4 cut(s) 110, 141, 453, 1038
TscAI CASTG 4 cut(s) 394, 409, 885, 1048
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 13, 399, 563, 803
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 184, 236, 291, 702
TspRI CASTG 4 cut(s) 394, 409, 885, 1048
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 3 cut(s) 113, 351, 829
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 1 cut(s) 893
Zsp2I ATGCAT 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.