AT1G77800

PHD finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004120
Physical Location & Seq
Forward (+)
29253332 .. 29260617
7286 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77800.3

Sequence Viewer

Length: 4128 bp
ATGAACGTTGACCAATGCCAGTGGCGGAAGAAGATGATGGGTAGGGGAGTGGACGGAGGTTGTGGTGCTGAAGAGAAGCCTTATCGACCATTTCGTAGGGTTGCGTTAGATAAGGAGAATGGGTATGAGGATATGGGTTCGTTGGAAATCGATTTCTTAGCTCAAGCTAGCAAAAATCTATCTGAGAGGTCTCCTTTTGATGTTCCTGAAGATGGTTCTACTTCTGTGTTAAGTGTGCCTACTCTACCTATTGCTTTAGCTAATTTGCTGAAGAACCATTCGGATAATAAGAAACGGCATAAGAAGTCTCATTCTGGTGCGGATAAGAAGAAGAAGAAGTCTTCTAGGCAAGGGGATAAGTTGAGAAGTGGGAGTATCTGGCTTGAACATGAGGACTACTTTAGGCGCTTAGATTTTCCTGATTTAGAAACTTTGTCTGATTTAGCATCTCTACGATCTTTATCTTCTAGAAATTGCTTTTCCATTCCATCGGTGGAATACGATTCTATTGATATTCAACAGAGGGAAACTGATGCGAGTGCAAAGAATGAGGATGTTGTTTGTGGAGATGGCGTTGTTCTGGAACAAATTAAGAACCTTCTCACTAAAGATATATCTGAAGGCACAGTAAGAAAAGAAGAGGATGTTGTTAAGCCAATGGGTGTTGACAATGTAGGGAATGGAATCTCCTCTGGGTCAGACTATTCTGGTAGTTTAGAATGGGTTTTAGGTAATAGAAATAGGATTTTGTTGACATCAGAAAGGCCCTCCAAAAAGCGGAAGCTTCTTGGTAGTGATGCAGGTTTGGGGAAATTAATGGTTGCGGCTCCTTGTGAAGGGAATGCGTTGTTATGTGATTTTTGCTGCACTGGTCATCATCAGTTGATTGTTTGCACTTCCTGCAAAGCTACAGTTCACAAAAAATGCTATGGCCTGCTTGAAGATTCAGGTAAACCTTGGTTGTGCTCTTGGTGTGAGCTGGAGAATGGTCGTGCTGATTCTGAAAGACCATGCTTGCTTTGTCCAAAAAAGGGTGGCATCCTTAAACCTGTTCTCTCAAAAACTGAGAATGGTGGGCCGGCGGAGTTTGCTCATCTGTTTTGTTCTCTGTGGATGCCTGAGGTGTATATAGAAGACTTGAAAAAAATGGAGCCCATCTTGAATTTTCCTGGGATAAAAGAAACTCGGAGGAAGTTATTGTGTAACTTGTGCAAGGTGAAATCTGGTGCTTGCATTCGCTGTTGTAATGTCGTTGTCCTTACTTTGTCTATGCCAGATAACCCAATTGTCTGGATTATTTTCACTGGAAAATGCTTTGTTGGCATTTATTATCACAATGCAGTGGAGGCAGGGAATAGGCTAGAGGTCTGGGGAAAACATGGGTGTGATACTGTTGAACTGCGAGCTTTCTGCTCGAAGCATTCAGATATTCAAGAAAGTGGAAAGTCAGTAGAGGGAGGAGAAAGTAATGCAGCTGAAAGTCGTTCTCCTATATGTCATCTTCCATCAGAATCTGTTGGAGAAGGTCACCTAAGTAATGATGAGATGGGAGTTGATGTAGGAACACCGGGTACAGGTTCTGATATTTCGAGAAACAGTGACTTACAAGAGCTAGAATCACCACATTCAAAATTTAACTTGTCTGCAACAGACAATGTAGAATCAGGGATGACTGGGAGAAGCAACGAAGATGAAAGAACTCTGTCCAAGTCTCTTAGTTTTGGATTGATTCTGAAAAAGTTGATCGACCTGGGTAAAGTGGATGTGAAGGATGTGGCTGCAGAGATTGGGATTAATCCTGATGCTTTGAGGGCTAAACTTACGGACGGAGACTTGTTACCTGATTTACTAGGCAAAGTAGTTAAATGGCTTAGCCAGCATGCACACATGGGTTCTTCGGATAAAGGCAAAAATTTAAAACCTAAAGCTAATGGATCAGTTTTGAAGAAAGAAGGAAGTGTTAGTTTGGCACCTGATCATTCTCCAGAAGAAAAGAATTCAATAGTGCTTGATCAGAAAGTTCATCATGGGAAAAGTTCAGTTATTCCTTCTGATGATCATGGAGAACAATCAAACTCCAGTTCTTCTGGAGTCATGATGGAGAATGCCTTTTCCTTGAGGCCAAATAGTTCTCAGAATCGTGGAAATTTGAACTGTCCAAACCCCATTATCTTGGATCTCTTCAATCAGGAAGCATATCCTGGTTTCAATCCTCATCGTTATATCCACAAAGAATTGTCAGAACTTGGCAAGGAACAAACCCTGAAAAGCAGCACGGATTCTGATGTGGCTAGGATGACAACCAATTTTGATGGCTCTGAAGAAGGAAACAAACATCTGCAGGGTGCAGAGACATTTCTTCAGTTATCTAAAGCTAGGAAATTGGGCATACTGGATCTGTCTCCTGAAGATGAATTGGAAGGAGAACTTCTATATTATCAGCTTCAGTTACTTGGCACTGCAGTTTCAAGAAAGCAACTATCTGACAATTTAGTCTATGAAGTTGCTAAAAAGCTGCCTCTGGAAATTGATGAACAACATGGACGAAGATGGGATGATGTTCTGGTCAACAAATATTTCCATGATGTCAGGGAAGCAAGAAAGCAAGGTAGGAAAGAGCAAAGAAACAAACAAGCCCAGGCTGTTCTAGCTGCTGCTACTGCTGCAGCGGCGACATCTTCTAGGAATACATCGCTTAGGAAAGATATGTCAGAAGAACCTGCACAACAAGAGATGAGCACTTCTAGACGTAAAGTTGTTGGCAGCTCTCACCTAGTTCCACAGACAAAGGAATCACTTTTAAAGATGGCTGTTTCTGGGCCACCATCCGAGAAGCGGTCTGATCATCACACACCAGACTTTTTAGTAGAAAATCCACGAACTTGTGACATCTGCAGGCGCTCCGAAACTATATGGAACCTGATTGTAGTGTGCTCTAGTTGCAAGGTTGCTGTTCACATTGATTGCTACAAATGTGCTAAAGAATCTACTGGTCCCTGGTACTGTGAGCTATGTGCGGAGTCATCTTCAGAACCTTCTTTCAATTTTGGGGAAAAACCGAATTCTTCTACAGAATGTACTCTGTGTGGTGGCACAACTGGGGCTTTTAGGAAAACCACAAATGGGCAATGGGTACATGCGTTTTGTGCTGAGTGGTCCTTGGAGTCAACGTTCAGAAGGGGACAAATAAATCCTGTGCAGGGAATGGAGTCTCTGGCCAAGAAAACGGATAATTGTTGTGTATGCCAACGGATATATGGTGCATGCACTAAGTGCAGTTATGGTAACTGCCAGACGACATTCCACCCCTCCTGTGCCAGAAGCGCGGGTTTTCATATGACTGGTGGTGGTAAACATCCGCATAAGGCGTACTGTGAGAAGCACAGCATGGAGCAGAAGGCAAAGGCCGAATCTCAGAAACATGGTGCAGAGGAGCTGAAAAGTCTCAAACATTATAGGGTTGAACTTGAGAGGTTACGCCTTCTGTGCGAGCGGATAGTCAAGAGGGAGAAATTAAAGCGAGAGTTGGCTATTTCCTCACATGAAATACTTGCTGCCAAAAGGGATCATGCTGCACGGCCATTACATGTCCGTAATCCATTTTCTCCTCCAGAAGTTTCGTCGGACTCAGCTACAACATCAATAAAAGGCCATCCTGATAGTAATATATCTGGCAGTGAAGCAATACAGAGGTCAGATGATATCACTATTGACAGCACAGTCACTGATAAGCGCAGAGGCAAAGGTCCCTTATTAATGGACACGGATCAGAAAACTGATGACAGTGCTACTTCCAAGAGTCGGTTTTCCCGTAAACTAACAGAAAGACAGATCTTATCTGGGAAAACTGTTCCCCGCAAACATTGTATAGTGTCACCTAGTGTTTCAGAGGATGGAGATAACGGGTCAAAGCCCAAGAAGCAGCATGTAGAAACATTTGCAAAAGAGCTGGTGATGACATCAGATGAAGCTTCTTTCAAGAACCGGCGGCTCCCAAAGGGATACTTCTATGTTCCTGTTGATTGTCTTCAGGAAGACAAACCGGGAAACCAGAAGCTGGCTTCATCTGACAAGCCAGCGAACCAGAAGACATCTTCAGGTGATCAGTCAGGTAAAGACGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1375

Amino Acids

151.69

Weight (kDa)

7.81

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 294 - 326 4.3e-07 PHD-finger
zf-HC5HC2H_2 PF13832 337 - 455 2.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 365 - 456 6.2e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1022 - 1056 2.4e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1075 - 1178 1.7e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1096 - 1179 4.9e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 2492, 3719
Acc36I ACCTGC 2 cut(s) 791, 2728
AccB1I GGYRCC 1 cut(s) 1969
AccB7I CCANNNNNTGG 1 cut(s) 4057
AccBSI CCGCTC 1 cut(s) 3493
AccII CGCG 1 cut(s) 3326
AclI AACGTT 2 cut(s) 6, 3170
AclWI GGATC 5 cut(s) 1942, 2184, 2403, 3573, 3774
AcoI YGGCCR 2 cut(s) 3216, 3578
AcsI RAATTY 6 cut(s) 1162, 1631, 1912, 1996, 2146, 3061
AdeI CACNNNGTG 2 cut(s) 3273, 3881
AfaI GTAC 5 cut(s) 1573, 3002, 3079, 3135, 3371
AflIII ACRYGT 1 cut(s) 3586
AjnI CCWGG 5 cut(s) 1168, 1749, 2200, 2637, 2996
AloI GAACNNNNNNTCC 2 cut(s) 3155, 3187
Alw21I GWGCWC 3 cut(s) 968, 2741, 2936
Alw26I GTCTC 8 cut(s) 195, 312, 1716, 1824, 2345, 2406, 3216, 3449
AlwI GGATC 5 cut(s) 1942, 2184, 2403, 3573, 3774
AlwNI CAGNNNCTG 4 cut(s) 1514, 1580, 3725, 4057
AoxI GGCC 9 cut(s) 764, 931, 1076, 2120, 2819, 3216, 3405, 3578, 3649
ApoI RAATTY 6 cut(s) 1162, 1631, 1912, 1996, 2146, 3061
AseI ATTAAT 3 cut(s) 815, 1794, 3755
AspLEI GCGC 4 cut(s) 408, 2901, 3326, 3735
AspS9I GGNCC 6 cut(s) 765, 1076, 2819, 2993, 3156, 3746
AsuC2I CCSGG 2 cut(s) 1569, 4044
AsuHPI GGTGA 7 cut(s) 1228, 1520, 1611, 2762, 3867, 3964, 4112
AsuNHI GCTAGC 1 cut(s) 167
AvaII GGWCC 3 cut(s) 2993, 3156, 3746
AxyI CCTNAGG 1 cut(s) 1119
BaeI ACNNNNGTAYC 2 cut(s) 3125, 3158
BalI TGGCCA 1 cut(s) 3218
BanI GGYRCC 1 cut(s) 1969
BanII GRGCYC 1 cut(s) 1155
BbsI GAAGAC 5 cut(s) 333, 1140, 4019, 4041, 4094
Bbv12I GWGCWC 3 cut(s) 968, 2741, 2936
BceAI ACGGC 2 cut(s) 311, 3593
BcgI CGANNNNNNTGC 2 cut(s) 1392, 1426
BciT130I CCWGG 5 cut(s) 1170, 1751, 2202, 2639, 2998
BciVI GTATCC 1 cut(s) 3995
BclI TGATCA 5 cut(s) 1975, 2011, 2056, 2842, 4102
BcnI CCSGG 2 cut(s) 1569, 4044
BcoDI GTCTC 8 cut(s) 195, 312, 1716, 1824, 2345, 2406, 3216, 3449
BfmI CTRYAG 7 cut(s) 909, 1779, 2339, 2460, 2664, 2893, 3069
BfoI RGCGCY 2 cut(s) 409, 2902
BfuAI ACCTGC 2 cut(s) 791, 2728
BfuI GTATCC 1 cut(s) 3995
BglII AGATCT 1 cut(s) 3831
BlpI GCTNAGC 1 cut(s) 1871
Bme1390I CCNGG 7 cut(s) 1170, 1569, 1751, 2202, 2639, 2998, 4044
Bme18I GGWCC 3 cut(s) 2993, 3156, 3746
BmgT120I GGNCC 6 cut(s) 765, 1076, 2819, 2993, 3156, 3746
BmiI GGNNCC 7 cut(s) 828, 1152, 1971, 2918, 2995, 3748, 3992
BmrFI CCNGG 7 cut(s) 1170, 1569, 1751, 2202, 2639, 2998, 4044
BmrI ACTGGG 2 cut(s) 1683, 3108
BmsI GCATC 6 cut(s) 455, 523, 787, 1047, 1104, 1792
BmtI GCTAGC 1 cut(s) 171
BmuI ACTGGG 2 cut(s) 1683, 3108
BpiI GAAGAC 5 cut(s) 333, 1140, 4019, 4041, 4094
BpmI CTGGAG 5 cut(s) 1001, 1968, 2062, 2109, 3594
Bpu10I CCTNAGC 1 cut(s) 2696
Bpu1102I GCTNAGC 1 cut(s) 1871
BpuEI CTTGAG 3 cut(s) 147, 2137, 3488
BpuMI CCSGG 2 cut(s) 1569, 4044
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 6 cut(s) 956, 1169, 1750, 2637, 2996, 3159
BsaXI ACNNNNNCTCC 8 cut(s) 107, 137, 558, 588, 1542, 1572, 3155, 3185
Bse118I RCCGGY 2 cut(s) 1078, 3984
Bse1I ACTGG 9 cut(s) 19, 874, 1309, 1678, 2079, 2397, 2995, 3103, 3346
Bse21I CCTNAGG 1 cut(s) 1119
Bse3DI GCAATG 1 cut(s) 3134
Bse8I GATNNNNATC 1 cut(s) 460
BseBI CCWGG 5 cut(s) 1170, 1751, 2202, 2639, 2998
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 6 cut(s) 956, 1169, 1750, 2637, 2996, 3159
BseJI GATNNNNATC 1 cut(s) 460
BseMI GCAATG 1 cut(s) 3134
BseMII CTCAG 7 cut(s) 174, 1056, 1110, 2147, 3141, 3428, 3642
BseNI ACTGG 9 cut(s) 19, 874, 1309, 1678, 2079, 2397, 2995, 3103, 3346
BseRI GAGGAG 4 cut(s) 679, 1473, 3446, 3597
BsgI GTGCAG 7 cut(s) 850, 2367, 2706, 3218, 3295, 3447, 3558
Bsh1236I CGCG 1 cut(s) 3326
BshFI GGCC 9 cut(s) 766, 933, 1078, 2122, 2821, 3218, 3407, 3580, 3651
BshNI GGYRCC 1 cut(s) 1969
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 3 cut(s) 968, 2741, 2936
BsiSI CCGG 4 cut(s) 1079, 1568, 3985, 4043
BslFI GGGAC 3 cut(s) 2979, 3195, 3732
BsmAI GTCTC 8 cut(s) 195, 312, 1716, 1824, 2345, 2406, 3216, 3449
BsmFI GGGAC 3 cut(s) 2979, 3195, 3732
BsmI GAATGC 4 cut(s) 847, 1233, 1420, 2110
BsnI GGCC 9 cut(s) 766, 933, 1078, 2122, 2821, 3218, 3407, 3580, 3651
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 4 cut(s) 968, 1155, 2741, 2936
Bsp1720I GCTNAGC 1 cut(s) 1871
BspANI GGCC 9 cut(s) 766, 933, 1078, 2122, 2821, 3218, 3407, 3580, 3651
BspCNI CTCAG 7 cut(s) 175, 1057, 1111, 2146, 3142, 3427, 3641
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 3326
BspHI TCATGA 1 cut(s) 2094
BspLI GGNNCC 7 cut(s) 828, 1152, 1971, 2918, 2995, 3748, 3992
BspMAI CTGCAG 5 cut(s) 1783, 2343, 2464, 2668, 2897
BspMI ACCTGC 2 cut(s) 791, 2728
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 5 cut(s) 1942, 2184, 2403, 3573, 3774
BspT107I GGYRCC 1 cut(s) 1969
BspTNI GGTCTC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 3493
BsrDI GCAATG 1 cut(s) 3134
BsrFI RCCGGY 2 cut(s) 1078, 3984
BsrI ACTGG 9 cut(s) 19, 874, 1309, 1678, 2079, 2397, 2995, 3103, 3346
BssAI RCCGGY 2 cut(s) 1078, 3984
BssECI CCNNGG 6 cut(s) 956, 1169, 1750, 2637, 2996, 3159
BssT1I CCWWGG 2 cut(s) 956, 3159
Bst2UI CCWGG 5 cut(s) 1170, 1751, 2202, 2639, 2998
Bst6I CTCTTC 3 cut(s) 66, 633, 2186
BstAPI GCANNNNNTGC 2 cut(s) 900, 3273
BstEII GGTNACC 1 cut(s) 1526
BstENI CCTNNNNNAGG 1 cut(s) 834
BstFNI CGCG 1 cut(s) 3326
BstH2I RGCGCY 2 cut(s) 409, 2902
BstHHI GCGC 4 cut(s) 408, 2901, 3326, 3735
BstMAI GTCTC 8 cut(s) 195, 312, 1716, 1824, 2345, 2406, 3216, 3449
BstNI CCWGG 5 cut(s) 1170, 1751, 2202, 2639, 2998
BstNSI RCATGY 5 cut(s) 1883, 3140, 3267, 3590, 3929
BstPI GGTNACC 1 cut(s) 1526
BstSCI CCNGG 7 cut(s) 1168, 1567, 1749, 2200, 2637, 2996, 4042
BstSFI CTRYAG 7 cut(s) 909, 1779, 2339, 2460, 2664, 2893, 3069
BstUI CGCG 1 cut(s) 3326
BstV2I GAAGAC 5 cut(s) 333, 1140, 4019, 4041, 4094
BstX2I RGATCY 3 cut(s) 2176, 2395, 3831
BstXI CCANNNNNNTGG 2 cut(s) 1290, 2173
BstYI RGATCY 3 cut(s) 2176, 2395, 3831
Bsu15I ATCGAT 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 1119
BsuI GTATCC 1 cut(s) 3995
BsuRI GGCC 9 cut(s) 766, 933, 1078, 2122, 2821, 3218, 3407, 3580, 3651
BsuTUI ATCGAT 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 2676
BtsI GCAGTG 3 cut(s) 1347, 2457, 3682
BtsIMutI CAGTG 9 cut(s) 26, 867, 1302, 1347, 1603, 2457, 3682, 3723, 3790
BveI ACCTGC 2 cut(s) 791, 2728
CaiI CAGNNNCTG 4 cut(s) 1514, 1580, 3725, 4057
CciI TCATGA 1 cut(s) 2094
CfoI GCGC 4 cut(s) 408, 2901, 3326, 3735
Cfr10I RCCGGY 2 cut(s) 1078, 3984
Cfr13I GGNCC 6 cut(s) 765, 1076, 2819, 2993, 3156, 3746
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 5 cut(s) 1572, 3001, 3078, 3134, 3370
CspCI CAANNNNNGTGG 1 cut(s) 37
CviQI GTAC 5 cut(s) 1572, 3001, 3078, 3134, 3370
DraI TTTAAA 2 cut(s) 1917, 2802
DraIII CACNNNGTG 2 cut(s) 3273, 3881
DrdI GACNNNNNNGTC 2 cut(s) 2492, 3719
DseDI GACNNNNNNGTC 2 cut(s) 2492, 3719
EaeI YGGCCR 2 cut(s) 3216, 3578
Eam1104I CTCTTC 3 cut(s) 66, 633, 2186
EarI CTCTTC 3 cut(s) 66, 633, 2186
EciI GGCGGA 2 cut(s) 40, 1097
Eco130I CCWWGG 2 cut(s) 956, 3159
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 3703
Eco47I GGWCC 3 cut(s) 2993, 3156, 3746
Eco81I CCTNAGG 1 cut(s) 1119
Eco91I GGTNACC 1 cut(s) 1526
EcoNI CCTNNNNNAGG 1 cut(s) 834
EcoO109I RGGNCCY 2 cut(s) 765, 3746
EcoO65I GGTNACC 1 cut(s) 1526
EcoRI GAATTC 2 cut(s) 1996, 3061
EcoRII CCWGG 5 cut(s) 1168, 1749, 2200, 2637, 2996
EcoRV GATATC 1 cut(s) 3703
EcoT14I CCWWGG 2 cut(s) 956, 3159
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 2 cut(s) 956, 3159
FalI AAGNNNNNCTT 4 cut(s) 2412, 2444, 3989, 4021
FaqI GGGAC 3 cut(s) 2979, 3195, 3732
FauI CCCGC 2 cut(s) 3319, 3863
FauNDI CATATG 1 cut(s) 3336
FbaI TGATCA 5 cut(s) 1975, 2011, 2056, 2842, 4102
FriOI GRGCYC 1 cut(s) 1155
GlaI GCGC 4 cut(s) 407, 2900, 3325, 3734
GsuI CTGGAG 5 cut(s) 1001, 1968, 2062, 2109, 3594
HaeII RGCGCY 2 cut(s) 409, 2902
HaeIII GGCC 9 cut(s) 766, 933, 1078, 2122, 2821, 3218, 3407, 3580, 3651
HapII CCGG 4 cut(s) 1079, 1568, 3985, 4043
HhaI GCGC 4 cut(s) 408, 2901, 3326, 3735
Hin6I GCGC 4 cut(s) 406, 2899, 3324, 3733
HinP1I GCGC 4 cut(s) 406, 2899, 3324, 3733
HincII GTYRAC 5 cut(s) 10, 667, 753, 2569, 3168
HindII GTYRAC 5 cut(s) 10, 667, 753, 2569, 3168
HindIII AAGCTT 2 cut(s) 782, 3969
HpaII CCGG 4 cut(s) 1079, 1568, 3985, 4043
HphI GGTGA 7 cut(s) 1228, 1520, 1611, 2762, 3867, 3964, 4112
Hpy99I CGWCG 2 cut(s) 3625, 4124
HpyCH4IV ACGT 3 cut(s) 6, 2749, 3170
HpySE526I ACGT 3 cut(s) 6, 2749, 3170
HspAI GCGC 4 cut(s) 406, 2899, 3324, 3733
KroI GCCGGC 1 cut(s) 1078
KroNI GCCGGC 1 cut(s) 1080
Ksp22I TGATCA 5 cut(s) 1975, 2011, 2056, 2842, 4102
LmnI GCTCC 6 cut(s) 832, 1150, 2906, 3391, 3433, 3996
LweI GCATC 6 cut(s) 455, 523, 787, 1047, 1104, 1792
MaeII ACGT 3 cut(s) 6, 2749, 3170
MbiI CCGCTC 1 cut(s) 3493
MfeI CAATTG 1 cut(s) 1284
MflI RGATCY 3 cut(s) 2176, 2395, 3831
MhlI GDGCHC 4 cut(s) 968, 1155, 2741, 2936
MlsI TGGCCA 1 cut(s) 3218
MluNI TGGCCA 1 cut(s) 3218
MlyI GAGTC 6 cut(s) 2100, 3029, 3173, 3218, 3620, 3808
MmeI TCCRAC 3 cut(s) 123, 1498, 3603
Mox20I TGGCCA 1 cut(s) 3218
MroNI GCCGGC 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 3218
MslI CAYNNNNRTG 2 cut(s) 315, 1383
Msp20I TGGCCA 1 cut(s) 3218
MspA1I CMGCKG 2 cut(s) 1475, 2669
MspI CCGG 4 cut(s) 1079, 1568, 3985, 4043
MspR9I CCNGG 7 cut(s) 1170, 1569, 1751, 2202, 2639, 2998, 4044
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 4 cut(s) 847, 1233, 1420, 2110
MvaI CCWGG 5 cut(s) 1170, 1751, 2202, 2639, 2998
MvnI CGCG 1 cut(s) 3326
NaeI GCCGGC 1 cut(s) 1080
NciI CCSGG 2 cut(s) 1569, 4044
NdeI CATATG 1 cut(s) 3336
NgoMIV GCCGGC 1 cut(s) 1078
NheI GCTAGC 1 cut(s) 167
NlaIV GGNNCC 7 cut(s) 828, 1152, 1971, 2918, 2995, 3748, 3992
NmuCI GTSAC 5 cut(s) 1526, 1598, 2885, 3721, 3873
NspI RCATGY 5 cut(s) 1883, 3140, 3267, 3590, 3929
PaeI GCATGC 2 cut(s) 1883, 3267
PagI TCATGA 1 cut(s) 2094
PciI ACATGT 1 cut(s) 3586
PcsI WCGNNNNNNNCGW 2 cut(s) 91, 3808
PctI GAATGC 4 cut(s) 847, 1233, 1420, 2110
PdiI GCCGGC 1 cut(s) 1080
PflMI CCANNNNNTGG 1 cut(s) 4057
PleI GAGTC 6 cut(s) 2099, 3028, 3172, 3217, 3620, 3807
PpsI GAGTC 6 cut(s) 2099, 3028, 3172, 3217, 3620, 3807
PpuMI RGGWCCY 1 cut(s) 3746
PscI ACATGT 1 cut(s) 3586
PshBI ATTAAT 3 cut(s) 815, 1794, 3755
Psp1406I AACGTT 2 cut(s) 6, 3170
Psp5II RGGWCCY 1 cut(s) 3746
Psp6I CCWGG 5 cut(s) 1168, 1749, 2200, 2637, 2996
PspEI GGTNACC 1 cut(s) 1526
PspGI CCWGG 5 cut(s) 1168, 1749, 2200, 2637, 2996
PspN4I GGNNCC 7 cut(s) 828, 1152, 1971, 2918, 2995, 3748, 3992
PspPI GGNCC 6 cut(s) 765, 1076, 2819, 2993, 3156, 3746
PspPPI RGGWCCY 1 cut(s) 3746
PsrI GAACNNNNNNTAC 2 cut(s) 1555, 1587
PstI CTGCAG 5 cut(s) 1783, 2343, 2464, 2668, 2897
PstNI CAGNNNCTG 4 cut(s) 1514, 1580, 3725, 4057
PsuI RGATCY 3 cut(s) 2176, 2395, 3831
PvuII CAGCTG 1 cut(s) 1475
RsaI GTAC 5 cut(s) 1573, 3002, 3079, 3135, 3371
RsaNI GTAC 5 cut(s) 1572, 3001, 3078, 3134, 3370
RseI CAYNNNNRTG 2 cut(s) 315, 1383
Sau96I GGNCC 6 cut(s) 765, 1076, 2819, 2993, 3156, 3746
SchI GAGTC 6 cut(s) 2100, 3029, 3173, 3218, 3620, 3808
ScrFI CCNGG 7 cut(s) 1170, 1569, 1751, 2202, 2639, 2998, 4044
SduI GDGCHC 4 cut(s) 968, 1155, 2741, 2936
SfaNI GCATC 6 cut(s) 455, 523, 787, 1047, 1104, 1792
SfcI CTRYAG 7 cut(s) 909, 1779, 2339, 2460, 2664, 2893, 3069
SinI GGWCC 3 cut(s) 2993, 3156, 3746
SmiMI CAYNNNNRTG 2 cut(s) 315, 1383
SmlI CTYRAG 3 cut(s) 162, 2116, 3467
SmoI CTYRAG 3 cut(s) 162, 2116, 3467
SphI GCATGC 2 cut(s) 1883, 3267
SspI AATATT 1 cut(s) 2576
StyD4I CCNGG 7 cut(s) 1168, 1567, 1749, 2200, 2637, 2996, 4042
StyI CCWWGG 2 cut(s) 956, 3159
TaiI ACGT 3 cut(s) 9, 2752, 3173
TaqI TCGA 5 cut(s) 85, 150, 1415, 1589, 1746
TatI WGTACW 1 cut(s) 3077
TauI GCSGC 3 cut(s) 827, 2672, 3991
TscAI CASTG 9 cut(s) 26, 874, 1309, 1347, 1603, 2464, 3682, 3730, 3790
TseFI GTSAC 5 cut(s) 1526, 1598, 2885, 3721, 3873
Tsp45I GTSAC 5 cut(s) 1526, 1598, 2885, 3721, 3873
TspGWI ACGGA 8 cut(s) 69, 1838, 1842, 2291, 3242, 3265, 3581, 3779
TspRI CASTG 9 cut(s) 26, 874, 1309, 1347, 1603, 2464, 3682, 3730, 3790
Van91I CCANNNNNTGG 1 cut(s) 4057
VpaK11BI GGWCC 3 cut(s) 2993, 3156, 3746
VspI ATTAAT 3 cut(s) 815, 1794, 3755
XagI CCTNNNNNAGG 1 cut(s) 834
XapI RAATTY 6 cut(s) 1162, 1631, 1912, 1996, 2146, 3061
XbaI TCTAGA 2 cut(s) 467, 2744
XceI RCATGY 5 cut(s) 1883, 3140, 3267, 3590, 3929
XcmI CCANNNNNNNNNTGG 2 cut(s) 490, 3254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.