Rw0G010670

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00458
OG0004120
Physical Location & Seq
Forward (+)
3139 .. 12740
9602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010670.1

Sequence Viewer

Length: 4515 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAAGCCTTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTCCTAAAAAGTCGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTGGTTGAGGACGTCTCAGCCTCAGCTGCTGCTCCTTCTTCTTCTTCCTCGAGTGTGGTCCCCACCACCTTGCCGAGGGGGTTGGCTAGCTTCTTGTCCAGGCAATCTGATAGCCGGAAGCGGCACAAGAAGTCGCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTTGAAGGGGTCTAGTGTGTGGGCAGAGACAGAGGAGTACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCAGCTACTAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTCGTAATTCGAATGAGACTGTAAACGGTGGCAATGCTAATGAGGTTGCTGCCGAGGATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGACGAGATTGTGAATGGCGGGAATGATAGTGAGGTTGTTGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTAGTTGAAAAGGTTGATGAGAATGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACGGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTTCTGTTTCGGATTCTCCCAGGGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACATCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTTGGTGCTGATGCAGGGTTGGAGAAAGTCTTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCGATTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGACGTAGATGCATCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGAAGAATGGTAATAGTGGTGGATCTCCGGAGTTTGCCCACTTGTTCTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCAGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGCGGTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGGTAAATTCGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGACGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCTTCACTTGCTGATGATAGCGTGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAACTTAAGACCGTCATTTGCATCATTGGCCGAGTTTGGAGGTTCTGATGCTCCATTATCAGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGGGATTCCGCTGGACAAGATTAAATTGGATAAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCGATGGATGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTCTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTTGGTGATTGCAAATGTAGATCCATCGTTTTCAGTTGAAAAACCAGTTCCTGAAAGCAAGAAATCGGGGGCAGAAGCTCCTAGTTCTTATGTCCACCCGCCTATGCAGAAGACATTGTCACAGATGGAGAACGGGGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGATGAGAGGAATTTAGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTATCAGCATAGGTTGCAAAACAATATAACTGCAAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATTGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAACCAATATCTTTGCGAGCTTCGAGATGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCGTTGATGAACACCCCCATCAGGAGAATGTGGTGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCAGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGTCAATGTTTGGGAGAAAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAATGTAAAAACTCTCAGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTCTATACAATAAGGGCTGAGCTGGAGAGATTACGCCTTATTTGCGAAAGAATTATCAAACGGGAAAAAGTAAAGAGGGAATTACTCATTTGTTCACATGACCTTCTCGCTGTGAAAAGAGATCATGTTGCCCGTTCCGTGCTTGTTAACAGTCCTTTCTTGCTACCGGATGCTAGTTCTGAATCAGCAACAACTTCTCTTAAAGTGCAGACAGATGATTACAGGTCATGCAGTGAGACATTCCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCTGTTAGGCACAGGACTAGAGTTCCTATAACTATTGATAACGACCAAAGGACAGATGATGACAGCTCCACATCCCAAAATCAATTTACCCACAATCTTTCGGATAGGATGCAATTTTCTGAGAAACAGATTCCATTCAGACCTTCTGCCGCGAATTGTAATCTTTCAGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCATGCCGAGATGTTTTCGAAAGAACTGGTGATGACATCAGATCAGGCATCGGTGAAAAATATGCTATTACCCAAAGGATATGCATATGTTCCTGCTGATTGCATTCCAAATGAGAAGCAGGCCAACCAGGATACTTGTTCTGGTGAACGACCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1504

Amino Acids

165.29

Weight (kDa)

6.66

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 366 - 399 2.3e-09 PHD-finger
zf-HC5HC2H_2 PF13832 410 - 528 2.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 438 - 529 2.9e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1114 - 1147 9.8e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1163 - 1269 6.9e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1184 - 1270 4.8e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 2639
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 4298
AccIII TCCGGA 1 cut(s) 1300
AclWI GGATC 6 cut(s) 1303, 1616, 1629, 2043, 2132, 2495
AcoI YGGCCR 2 cut(s) 2088, 3697
AcsI RAATTY 8 cut(s) 132, 514, 1527, 1645, 1769, 1817, 2758, 3668
AcuI CTGAAG 3 cut(s) 894, 1295, 1737
AcyI GRCGYC 3 cut(s) 219, 350, 1935
AfaI GTAC 5 cut(s) 422, 1593, 2160, 3425, 4141
AfiI CCNNNNNNNGG 9 cut(s) 282, 518, 1040, 2169, 2639, 3087, 3133, 3706, 3728
AflII CTTAAG 2 cut(s) 1021, 2065
AjiI CACGTC 1 cut(s) 1909
AjnI CCWGG 4 cut(s) 173, 305, 911, 4473
AjuI GAANNNNNNNTTGG 4 cut(s) 1513, 1545, 2626, 2658
AleI CACNNNNGTG 1 cut(s) 3258
Alw21I GWGCWC 2 cut(s) 2355, 3158
AlwI GGATC 6 cut(s) 1303, 1616, 1629, 2043, 2132, 2495
AlwNI CAGNNNCTG 6 cut(s) 236, 1885, 2126, 2141, 2531, 3077
Ama87I CYCGRG 2 cut(s) 256, 530
Aor13HI TCCGGA 1 cut(s) 1300
AoxI GGCC 8 cut(s) 10, 171, 180, 2088, 2232, 3637, 3697, 4467
ApoI RAATTY 8 cut(s) 132, 514, 1527, 1645, 1769, 1817, 2758, 3668
ArsI GACNNNNNNTTYG 4 cut(s) 3438, 3470, 3660, 3692
Asp700I GAANNNNTTC 1 cut(s) 1568
AspA2I CCTAGG 1 cut(s) 3299
AspLEI GCGC 2 cut(s) 969, 1448
AspS9I GGNCC 7 cut(s) 265, 1981, 2294, 3171, 3416, 3547, 3637
AsuC2I CCSGG 1 cut(s) 370
AsuII TTCGAA 2 cut(s) 602, 4364
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 2 cut(s) 256, 530
AvaII GGWCC 6 cut(s) 265, 1981, 2294, 3171, 3416, 3547
AvrII CCTAGG 1 cut(s) 3299
BalI TGGCCA 1 cut(s) 3699
BamHI GGATCC 1 cut(s) 1621
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1548
BauI CACGAG 1 cut(s) 2664
BbsI GAAGAC 3 cut(s) 1167, 2597, 3447
Bbv12I GWGCWC 2 cut(s) 2355, 3158
BbvCI CCTCAGC 2 cut(s) 229, 462
BceAI ACGGC 2 cut(s) 184, 3044
BciT130I CCWGG 4 cut(s) 175, 307, 913, 4475
BciVI GTATCC 2 cut(s) 4319, 4471
BcnI CCSGG 1 cut(s) 370
BfmI CTRYAG 6 cut(s) 2142, 3069, 3316, 3411, 3483, 4131
BfoI RGCGCY 2 cut(s) 970, 1449
BfrI CTTAAG 2 cut(s) 1021, 2065
BfuI GTATCC 2 cut(s) 4319, 4471
BglI GCCNNNNNGGC 1 cut(s) 179
BlnI CCTAGG 1 cut(s) 3299
BlpI GCTNAGC 2 cut(s) 3152, 3885
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 5 cut(s) 175, 307, 370, 913, 4475
Bme18I GGWCC 6 cut(s) 265, 1981, 2294, 3171, 3416, 3547
BmeT110I CYCGRG 2 cut(s) 256, 530
BmgBI CACGTC 1 cut(s) 1909
BmgT120I GGNCC 7 cut(s) 265, 1981, 2294, 3171, 3416, 3547, 3637
BmiI GGNNCC 8 cut(s) 70, 102, 267, 1371, 1623, 1856, 1983, 3548
BmrFI CCNGG 5 cut(s) 175, 307, 370, 913, 4475
BmrI ACTGGG 1 cut(s) 2798
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 2798
BpiI GAAGAC 3 cut(s) 1167, 2597, 3447
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 2 cut(s) 2793, 3911
Bpu10I CCTNAGC 4 cut(s) 229, 457, 462, 2775
Bpu1102I GCTNAGC 2 cut(s) 3152, 3885
Bpu14I TTCGAA 2 cut(s) 602, 4364
BpuEI CTTGAG 1 cut(s) 3833
BpuMI CCSGG 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 2903
BsaBI GATNNNNATC 1 cut(s) 3390
BsaHI GRCGYC 3 cut(s) 219, 350, 1935
BsaWI WCCGGW 4 cut(s) 5, 1300, 1396, 4033
BsaXI ACNNNNNCTCC 2 cut(s) 2449, 2479
Bsc4I CCNNNNNNNGG 9 cut(s) 282, 518, 1040, 2169, 2639, 3087, 3133, 3706, 3728
Bse1I ACTGG 7 cut(s) 1210, 1268, 2525, 2793, 3360, 3517, 4377
Bse3DI GCAATG 3 cut(s) 437, 631, 2000
Bse8I GATNNNNATC 1 cut(s) 3390
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 4 cut(s) 175, 307, 913, 4475
BseJI GATNNNNATC 1 cut(s) 3390
BseLI CCNNNNNNNGG 9 cut(s) 282, 518, 1040, 2169, 2639, 3087, 3133, 3706, 3728
BseMI GCAATG 3 cut(s) 437, 631, 2000
BseNI ACTGG 7 cut(s) 1210, 1268, 2525, 2793, 3360, 3517, 4377
BseRI GAGGAG 6 cut(s) 89, 431, 593, 833, 1840, 2185
BsgI GTGCAG 3 cut(s) 3282, 3709, 4094
Bsh1236I CGCG 1 cut(s) 4298
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 8 cut(s) 12, 173, 182, 2090, 2234, 3639, 3699, 4469
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 2355, 3158
BsiHKCI CYCGRG 2 cut(s) 256, 530
BsiSI CCGG 8 cut(s) 6, 116, 128, 322, 370, 1301, 1397, 4034
BslFI GGGAC 5 cut(s) 251, 576, 1967, 3215, 3609
BslI CCNNNNNNNGG 9 cut(s) 282, 518, 1040, 2169, 2639, 3087, 3133, 3706, 3728
BsmBI CGTCTC 4 cut(s) 226, 1942, 3019, 3323
BsmFI GGGAC 5 cut(s) 251, 576, 1967, 3215, 3609
BsmI GAATGC 6 cut(s) 343, 364, 667, 742, 1582, 4449
BsnI GGCC 8 cut(s) 12, 173, 182, 2090, 2234, 3639, 3699, 4469
BsoBI CYCGRG 2 cut(s) 256, 530
Bsp119I TTCGAA 2 cut(s) 602, 4364
Bsp1286I GDGCHC 3 cut(s) 1548, 2355, 3158
Bsp13I TCCGGA 1 cut(s) 1300
Bsp143I GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
Bsp1720I GCTNAGC 2 cut(s) 3152, 3885
Bsp19I CCATGG 1 cut(s) 3419
BspANI GGCC 8 cut(s) 12, 173, 182, 2090, 2234, 3639, 3699, 4469
BspEI TCCGGA 1 cut(s) 1300
BspFNI CGCG 1 cut(s) 4298
BspHI TCATGA 1 cut(s) 1377
BspLI GGNNCC 8 cut(s) 70, 102, 267, 1371, 1623, 1856, 1983, 3548
BspMAI CTGCAG 3 cut(s) 3073, 3320, 3487
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 6 cut(s) 1303, 1616, 1629, 2043, 2132, 2495
BspT104I TTCGAA 2 cut(s) 602, 4364
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 2 cut(s) 1021, 2065
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 3 cut(s) 437, 631, 2000
BsrI ACTGG 7 cut(s) 1210, 1268, 2525, 2793, 3360, 3517, 4377
BssMI GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
BssNI GRCGYC 3 cut(s) 219, 350, 1935
BssSI CACGAG 1 cut(s) 2664
BssT1I CCWWGG 3 cut(s) 3218, 3299, 3419
Bst2BI CACGAG 1 cut(s) 2664
Bst2UI CCWGG 4 cut(s) 175, 307, 913, 4475
Bst6I CTCTTC 4 cut(s) 810, 870, 2307, 3088
BstACI GRCGYC 3 cut(s) 219, 350, 1935
BstAFI CTTAAG 2 cut(s) 1021, 2065
BstAPI GCANNNNNTGC 4 cut(s) 2854, 3068, 3077, 3687
BstBAI YACGTR 1 cut(s) 2903
BstBI TTCGAA 2 cut(s) 602, 4364
BstC8I GCNNGC 7 cut(s) 295, 1474, 2232, 2990, 3776, 4350, 4467
BstDSI CCRYGG 3 cut(s) 2165, 3197, 3419
BstENI CCTNNNNNAGG 2 cut(s) 280, 3085
BstFNI CGCG 1 cut(s) 4298
BstH2I RGCGCY 2 cut(s) 970, 1449
BstHHI GCGC 2 cut(s) 969, 1448
BstKTI GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
BstMBI GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 4 cut(s) 175, 307, 913, 4475
BstNSI RCATGY 1 cut(s) 4352
BstSCI CCNGG 5 cut(s) 173, 305, 368, 911, 4473
BstSFI CTRYAG 6 cut(s) 2142, 3069, 3316, 3411, 3483, 4131
BstSNI TACGTA 1 cut(s) 2903
BstUI CGCG 1 cut(s) 4298
BstV2I GAAGAC 3 cut(s) 1167, 2597, 3447
BstX2I RGATCY 5 cut(s) 1295, 1621, 2035, 2137, 2500
BstYI RGATCY 5 cut(s) 1295, 1621, 2035, 2137, 2500
BsuI GTATCC 2 cut(s) 4319, 4471
BsuRI GGCC 8 cut(s) 12, 173, 182, 2090, 2234, 3639, 3699, 4469
BtgI CCRYGG 3 cut(s) 2165, 3197, 3419
BtrI CACGTC 1 cut(s) 1909
BtsI GCAGTG 1 cut(s) 4105
Cac8I GCNNGC 7 cut(s) 295, 1474, 2232, 2990, 3776, 4350, 4467
CaiI CAGNNNCTG 6 cut(s) 236, 1885, 2126, 2141, 2531, 3077
CciI TCATGA 1 cut(s) 1377
CfoI GCGC 2 cut(s) 969, 1448
Cfr13I GGNCC 7 cut(s) 265, 1981, 2294, 3171, 3416, 3547, 3637
CseI GACGC 3 cut(s) 339, 1924, 3672
Csp6I GTAC 5 cut(s) 421, 1592, 2159, 3424, 4140
CviQI GTAC 5 cut(s) 421, 1592, 2159, 3424, 4140
DpnI GATC 9 cut(s) 1297, 1623, 1786, 2037, 2139, 2502, 3990, 4117, 4389
DpnII GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
DraI TTTAAA 1 cut(s) 2199
EaeI YGGCCR 2 cut(s) 2088, 3697
Eam1104I CTCTTC 4 cut(s) 810, 870, 2307, 3088
EarI CTCTTC 4 cut(s) 810, 870, 2307, 3088
EciI GGCGGA 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 2903
Eco130I CCWWGG 3 cut(s) 3218, 3299, 3419
Eco147I AGGCCT 2 cut(s) 182, 2234
Eco24I GRGCYC 1 cut(s) 1548
Eco32I GATATC 2 cut(s) 3283, 3313
Eco47I GGWCC 6 cut(s) 265, 1981, 2294, 3171, 3416, 3547
Eco57I CTGAAG 3 cut(s) 894, 1295, 1737
Eco88I CYCGRG 2 cut(s) 256, 530
EcoNI CCTNNNNNAGG 2 cut(s) 280, 3085
EcoO109I RGGNCCY 1 cut(s) 3637
EcoRI GAATTC 1 cut(s) 1645
EcoRII CCWGG 4 cut(s) 173, 305, 911, 4473
EcoRV GATATC 2 cut(s) 3283, 3313
EcoT14I CCWWGG 3 cut(s) 3218, 3299, 3419
EcoT22I ATGCAT 3 cut(s) 1174, 1849, 4432
EcoT38I GRGCYC 1 cut(s) 1548
ErhI CCWWGG 3 cut(s) 3218, 3299, 3419
Esp3I CGTCTC 4 cut(s) 226, 1942, 3019, 3323
FaqI GGGAC 5 cut(s) 251, 576, 1967, 3215, 3609
FauI CCCGC 3 cut(s) 695, 1412, 2586
FauNDI CATATG 2 cut(s) 1427, 4432
FriOI GRGCYC 1 cut(s) 1548
GlaI GCGC 2 cut(s) 968, 1447
GsuI CTGGAG 2 cut(s) 2793, 3911
HaeII RGCGCY 2 cut(s) 970, 1449
HaeIII GGCC 8 cut(s) 12, 173, 182, 2090, 2234, 3639, 3699, 4469
HapII CCGG 8 cut(s) 6, 116, 128, 322, 370, 1301, 1397, 4034
HgaI GACGC 3 cut(s) 339, 1924, 3672
HhaI GCGC 2 cut(s) 969, 1448
Hin1I GRCGYC 3 cut(s) 219, 350, 1935
Hin6I GCGC 2 cut(s) 967, 1446
HinP1I GCGC 2 cut(s) 967, 1446
HincII GTYRAC 4 cut(s) 1906, 2974, 3582, 4015
HindII GTYRAC 4 cut(s) 1906, 2974, 3582, 4015
HpaI GTTAAC 2 cut(s) 2974, 4015
HpaII CCGG 8 cut(s) 6, 116, 128, 322, 370, 1301, 1397, 4034
Hpy99I CGWCG 2 cut(s) 355, 3666
HpyCH4IV ACGT 5 cut(s) 219, 1164, 1908, 2902, 3322
HpySE526I ACGT 5 cut(s) 219, 1164, 1908, 2902, 3322
Hsp92I GRCGYC 3 cut(s) 219, 350, 1935
HspAI GCGC 2 cut(s) 967, 1446
Kpn2I TCCGGA 1 cut(s) 1300
KspAI GTTAAC 2 cut(s) 2974, 4015
Kzo9I GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
LmnI GCTCC 6 cut(s) 244, 832, 1827, 2116, 2563, 4217
MaeII ACGT 5 cut(s) 219, 1164, 1908, 2902, 3322
MaeIII GTNAC 9 cut(s) 17, 1421, 1672, 1680, 2240, 2361, 2455, 2598, 4126
MalI GATC 9 cut(s) 1297, 1623, 1786, 2037, 2139, 2502, 3990, 4117, 4389
MbiI CCGCTC 1 cut(s) 193
MboI GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
MflI RGATCY 5 cut(s) 1295, 1621, 2035, 2137, 2500
MhlI GDGCHC 3 cut(s) 1548, 2355, 3158
MlsI TGGCCA 1 cut(s) 3699
MluNI TGGCCA 1 cut(s) 3699
MlyI GAGTC 6 cut(s) 115, 1100, 2132, 2324, 2926, 3587
MmeI TCCRAC 4 cut(s) 333, 990, 1366, 1905
Mox20I TGGCCA 1 cut(s) 3699
Mph1103I ATGCAT 3 cut(s) 1174, 1849, 4432
MroI TCCGGA 1 cut(s) 1300
MroXI GAANNNNTTC 1 cut(s) 1568
MscI TGGCCA 1 cut(s) 3699
MslI CAYNNNNRTG 4 cut(s) 1054, 1180, 2688, 3258
Msp20I TGGCCA 1 cut(s) 3699
MspA1I CMGCKG 4 cut(s) 233, 2257, 3059, 3074
MspCI CTTAAG 2 cut(s) 1021, 2065
MspI CCGG 8 cut(s) 6, 116, 128, 322, 370, 1301, 1397, 4034
MspR9I CCNGG 5 cut(s) 175, 307, 370, 913, 4475
Mva1269I GAATGC 6 cut(s) 343, 364, 667, 742, 1582, 4449
MvaI CCWGG 4 cut(s) 175, 307, 913, 4475
MvnI CGCG 1 cut(s) 4298
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 1 cut(s) 3419
NdeI CATATG 2 cut(s) 1427, 4432
NdeII GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
NheI GCTAGC 1 cut(s) 293
NlaIV GGNNCC 8 cut(s) 70, 102, 267, 1371, 1623, 1856, 1983, 3548
NmeAIII GCCGAG 4 cut(s) 306, 670, 2116, 4378
NmuCI GTSAC 7 cut(s) 17, 1672, 1680, 2240, 2455, 2598, 4126
NsiI ATGCAT 3 cut(s) 1174, 1849, 4432
NspI RCATGY 1 cut(s) 4352
NspV TTCGAA 2 cut(s) 602, 4364
OliI CACNNNNGTG 1 cut(s) 3258
PaeI GCATGC 1 cut(s) 4352
PaeR7I CTCGAG 1 cut(s) 256
PagI TCATGA 1 cut(s) 1377
PasI CCCWGGG 1 cut(s) 912
PceI AGGCCT 2 cut(s) 182, 2234
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PctI GAATGC 6 cut(s) 343, 364, 667, 742, 1582, 4449
PdmI GAANNNNTTC 1 cut(s) 1568
PflFI GACNNNGTC 2 cut(s) 1678, 2596
PflMI CCANNNNNTGG 1 cut(s) 2639
PleI GAGTC 6 cut(s) 115, 1099, 2131, 2323, 2925, 3586
PpsI GAGTC 6 cut(s) 115, 1099, 2131, 2323, 2925, 3586
Ppu21I YACGTR 1 cut(s) 2903
Psp6I CCWGG 4 cut(s) 173, 305, 911, 4473
PspGI CCWGG 4 cut(s) 173, 305, 911, 4473
PspN4I GGNNCC 8 cut(s) 70, 102, 267, 1371, 1623, 1856, 1983, 3548
PspPI GGNCC 7 cut(s) 265, 1981, 2294, 3171, 3416, 3547, 3637
PspXI VCTCGAGB 1 cut(s) 256
PstI CTGCAG 3 cut(s) 3073, 3320, 3487
PstNI CAGNNNCTG 6 cut(s) 236, 1885, 2126, 2141, 2531, 3077
PsuI RGATCY 5 cut(s) 1295, 1621, 2035, 2137, 2500
PsyI GACNNNGTC 2 cut(s) 1678, 2596
PvuII CAGCTG 3 cut(s) 233, 3059, 3074
RsaI GTAC 5 cut(s) 422, 1593, 2160, 3425, 4141
RsaNI GTAC 5 cut(s) 421, 1592, 2159, 3424, 4140
RseI CAYNNNNRTG 4 cut(s) 1054, 1180, 2688, 3258
Sau3AI GATC 9 cut(s) 1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
Sau96I GGNCC 7 cut(s) 265, 1981, 2294, 3171, 3416, 3547, 3637
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 6 cut(s) 115, 1100, 2132, 2324, 2926, 3587
ScrFI CCNGG 5 cut(s) 175, 307, 370, 913, 4475
SduI GDGCHC 3 cut(s) 1548, 2355, 3158
SfcI CTRYAG 6 cut(s) 2142, 3069, 3316, 3411, 3483, 4131
SfiI GGCCNNNNNGGCC 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 256
SfuI TTCGAA 2 cut(s) 602, 4364
SinI GGWCC 6 cut(s) 265, 1981, 2294, 3171, 3416, 3547
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 4 cut(s) 1054, 1180, 2688, 3258
SmlI CTYRAG 4 cut(s) 256, 1021, 2065, 3812
SmoI CTYRAG 4 cut(s) 256, 1021, 2065, 3812
SnaBI TACGTA 1 cut(s) 2903
SphI GCATGC 1 cut(s) 4352
SseBI AGGCCT 2 cut(s) 182, 2234
SspI AATATT 1 cut(s) 526
StuI AGGCCT 2 cut(s) 182, 2234
StyD4I CCNGG 5 cut(s) 173, 305, 368, 911, 4473
StyI CCWWGG 3 cut(s) 3218, 3299, 3419
TaiI ACGT 5 cut(s) 222, 1167, 1911, 2905, 3325
TaqI TCGA 9 cut(s) 257, 506, 602, 848, 1456, 1821, 2318, 2995, 4364
TatI WGTACW 2 cut(s) 420, 4139
TauI GCSGC 3 cut(s) 69, 331, 4298
TseFI GTSAC 7 cut(s) 17, 1672, 1680, 2240, 2455, 2598, 4126
Tsp45I GTSAC 7 cut(s) 17, 1672, 1680, 2240, 2455, 2598, 4126
TspGWI ACGGA 6 cut(s) 72, 807, 845, 2182, 2959, 3994
Tth111I GACNNNGTC 2 cut(s) 1678, 2596
Van91I CCANNNNNTGG 1 cut(s) 2639
Vha464I CTTAAG 2 cut(s) 1021, 2065
VpaK11BI GGWCC 6 cut(s) 265, 1981, 2294, 3171, 3416, 3547
XagI CCTNNNNNAGG 2 cut(s) 280, 3085
XapI RAATTY 8 cut(s) 132, 514, 1527, 1645, 1769, 1817, 2758, 3668
XbaI TCTAGA 1 cut(s) 2797
XceI RCATGY 1 cut(s) 4352
XhoI CTCGAG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 3299
XmnI GAANNNNTTC 1 cut(s) 1568
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 422
Zsp2I ATGCAT 3 cut(s) 1174, 1849, 4432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.