Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8280389.1

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 847

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8280389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atttagggttagggttacggccgatgggatttgtcggttgcggcgatttttctcggtgatgaccggaggccgatgtcacgggaagaagaagaagatgatgggtaggggtgcggacggaggttgcggcaccgaggagaagccttgcccgatatctagggttccgcccaagattccggcgactctgccggaaattcctaaaaagtcggttggggttgatttgtattctcaggccaggaaggccttgtgtgagcggtcgccgtttgatgtggttgaggacgtctcagcctcagctgctgctccttcttcttcttcctcgagtgtggtccccaccaccttgccgagggggttggctagcttcttgtccaggcaatctgatagccggaagcggcacaagaagtcgcattcggcgtcggataagaagcattcccggcagagtgagaagttgaaggggtctagtgtgtgggcagagacagaggagtactttagacccttgacattgcctgatattgaagccttagctgaggtatctgagcttagtaaggtagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

182

Amino Acids

19.8

Weight (kDa)

9.82

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	6 cut(s)	41, 111, 124, 162, 251, 386
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	190
AcyI	GRCGYC	2 cut(s)	277, 408
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	446, 510
AjnI	CCWGG	2 cut(s)	231, 363
AluBI	AGCT	4 cut(s)	291, 355, 519, 533
AluI	AGCT	4 cut(s)	291, 355, 519, 533
Alw26I	GTCTC	2 cut(s)	284, 462
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	4 cut(s)	19, 68, 229, 238
ApeKI	GCWGC	2 cut(s)	291, 294
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	126
BbvCI	CCTCAGC	2 cut(s)	287, 520
BbvI	GCAGC	2 cut(s)	278, 281
BccI	CCATC	2 cut(s)	18, 92
BceAI	ACGGC	2 cut(s)	34, 242
BciT130I	CCWGG	2 cut(s)	233, 365
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	284, 462
BfaI	CTAG	3 cut(s)	154, 352, 454
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	5 cut(s)	42, 125, 292, 295, 387
BlsI	GCNGC	5 cut(s)	43, 126, 293, 296, 388
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	3 cut(s)	233, 365, 428
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	128, 160, 325
BmrFI	CCNGG	3 cut(s)	233, 365, 428
BmtI	GCTAGC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu10I	CCTNAGC	3 cut(s)	287, 515, 520
BpuMI	CCSGG	1 cut(s)	428
BsaHI	GRCGYC	2 cut(s)	277, 408
BsaJI	CCNNGG	2 cut(s)	130, 339
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	233, 365
BseDI	CCNNGG	2 cut(s)	130, 339
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	5 cut(s)	240, 295, 301, 511, 520
BseRI	GAGGAG	2 cut(s)	147, 489
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	278, 281
Bsh1285I	CGRYCG	2 cut(s)	22, 255
BshFI	GGCC	4 cut(s)	21, 70, 231, 240
BshNI	GGYRCC	1 cut(s)	126
BsiEI	CGRYCG	2 cut(s)	22, 255
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	5 cut(s)	64, 174, 186, 380, 428
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	284, 462
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	2 cut(s)	401, 422
BsnI	GGCC	4 cut(s)	21, 70, 231, 240
BsoBI	CYCGRG	1 cut(s)	314
BspACI	CCGC	6 cut(s)	41, 111, 124, 162, 251, 386
BspANI	GGCC	4 cut(s)	21, 70, 231, 240
BspCNI	CTCAG	5 cut(s)	239, 294, 300, 512, 521
BspLI	GGNNCC	3 cut(s)	128, 160, 325
BspOI	GCTAGC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	130, 339
BssNI	GRCGYC	2 cut(s)	277, 408
Bst2UI	CCWGG	2 cut(s)	233, 365
BstACI	GRCGYC	2 cut(s)	277, 408
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	7 cut(s)	226, 281, 287, 515, 520, 529, 534
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstMAI	GTCTC	2 cut(s)	284, 462
BstMCI	CGRYCG	2 cut(s)	22, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 291, 428
BstNI	CCWGG	2 cut(s)	233, 365
BstSCI	CCNGG	3 cut(s)	231, 363, 426
BstV1I	GCAGC	2 cut(s)	278, 281
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	4 cut(s)	21, 70, 231, 240
Cac8I	GCNNGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	479
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	7 cut(s)	226, 281, 287, 515, 520, 529, 534
EaeI	YGGCCR	1 cut(s)	19
EagI	CGGCCG	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	231, 363
EcoRV	GATATC	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	284
FaqI	GGGAC	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	42, 125, 292, 295, 387
Fsp4HI	GCNGC	5 cut(s)	42, 125, 292, 295, 387
FspBI	CTAG	3 cut(s)	154, 352, 454
GluI	GCNGC	5 cut(s)	42, 125, 292, 295, 387
HaeIII	GGCC	4 cut(s)	21, 70, 231, 240
HapII	CCGG	5 cut(s)	64, 174, 186, 380, 428
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	2 cut(s)	277, 408
HinfI	GANTC	2 cut(s)	170, 179
HpaII	CCGG	5 cut(s)	64, 174, 186, 380, 428
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	374, 413, 530
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	230, 310, 440
HpyCH4IV	ACGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 291, 428
HpyF3I	CTNAG	7 cut(s)	226, 281, 287, 515, 520, 529, 534
HpySE526I	ACGT	1 cut(s)	277
Hsp92I	GRCGYC	2 cut(s)	277, 408
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	2 cut(s)	278, 281
MaeI	CTAG	3 cut(s)	154, 352, 454
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	14, 75
MbiI	CCGCTC	1 cut(s)	251
MboII	GAAGA	7 cut(s)	95, 98, 101, 104, 295, 298, 301
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	9 cut(s)	60, 111, 125, 266, 296, 323, 334, 467, 515
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	5 cut(s)	64, 174, 186, 380, 428
MspR9I	CCNGG	3 cut(s)	233, 365, 428
Mva1269I	GAATGC	2 cut(s)	401, 422
MvaI	CCWGG	2 cut(s)	233, 365
MwoI	GCNNNNNNNGC	3 cut(s)	237, 291, 428
NciI	CCSGG	1 cut(s)	428
NheI	GCTAGC	1 cut(s)	351
NlaIV	GGNNCC	3 cut(s)	128, 160, 325
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 405
PctI	GAATGC	2 cut(s)	401, 422
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	43, 126, 293, 296, 388
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	231, 363
PspGI	CCWGG	2 cut(s)	231, 363
PspN4I	GGNNCC	3 cut(s)	128, 160, 325
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SatI	GCNGC	5 cut(s)	42, 125, 292, 295, 387
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	233, 365, 428
SetI	ASST	9 cut(s)	122, 280, 293, 336, 357, 521, 526, 535, 544
SfiI	GGCCNNNNNGGCC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	190
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	6 cut(s)	41, 111, 124, 162, 251, 386
SspMI	CTAG	3 cut(s)	154, 352, 454
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	231, 363, 426
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	3 cut(s)	44, 127, 389
TfiI	GAWTC	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	291, 294
Tsp45I	GTSAC	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	3 cut(s)	154, 352, 454
ZraI	GACGTC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.