pycom08g14770

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0004120
Physical Location & Seq
Forward (+)
14204232 .. 14210909
6678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14770.10

Sequence Viewer

Length: 3354 bp
ATGACCGGAGGCCGATGTCACGAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAGGCCTTGCCTAATTCCTAGGGTTCCGCCCAAAATTCCGGCTACCCAACCGGAAATTCTAGAGAAGTCGTCGAGCTCTTTGAGAATTGATTTTTTCTCGCAGGCTAGGAAGGCTTTGTGTGAGCGCTCTCCTTTTGATGTTCCCGAGGACGGCTCAGCTTCGAGTGTGCCCACCACCTTGCCTAGGGGTTTGGCTAGCTTCTTGTCGAGGCAGTCGGATAGTCGAAAGCGGCATAAGAAGTCGCATGCCGGCGCTGAGAAGAAGAGTTTTCGGCAGAGAGAGAGGTCCCGGGGTAATAACATTTGGGTGGAGACTGAGGACTACTTTAGACCATTGACACTGCCTGATATTGATGCGTTGTCTCAGGTATCCGAGCTTAGTAATTTAGCTTCTCACAAGTGTTTTTTGATTCCGGTTGTGGGAAATGTTCTGAGGCGGAATGCGAATGAGAACGTTAATGCAAACGGAGTTGTTGTCAGTGAGGAGGATGCAAATGGCGGTAAGTCAAATTGTGTTGTTGTCAAGGATGAAGGTATAAATGGGGGGAATGCAAACGATGCCATTGTCATGGATGAGAATGCAAACGATCAAAATGCTAATGATGGTGTCGTCAAGGCTGAGTGTGCAAATGATGGGAATGCCAATTCGGTTGTAGTTGAAAAAGTGAATGAGAACGGTGGAAATGAAAATGGGGTTGTCGAAGACGAGGTTAAGATAGAGAAGGATGAGCATTCCATGGAAATAGATAGTGTGGGAGCTTCTGGGTTGCCTGAAGGGGAAGTTTCGCCTAGTGGTCTTGAGTGGCTTTTAGGGTACAGGAATAAGATTTCTTTAACTTCAGAGCGCCCGTCAAAGAAGCGGAAGGTTCTAGGTTCTGATGCAGGATTGGAGAAAGTGTTAATAGCGTCTCCATGTGATGGGAATTCATCTTTATGCCATTTCTGCTGCATGGGTGATGCAGGGAACGAGTCAAACCCATTGATTGTGTGTAGTTCTTGTAAGGTTGGAGTTCATCAGAAGTGCTATGGAGTACTAGAGAATGTAGATGCATCATGGTTATGCTCTTGGTGTAAGAAGAAGACTGATACTAGTGATTCAGTAAAGCCATGTGTGCTTTGCTCAAAGCAGGGTGGCGCTTTAAAGCCAGTTATTAAGAGCGTTGAAAATGGTGGATCTATGGATTTTGTTCACTTGTTTTGCTGTCAGTGGATGCCTGAGGTTTATATAGAGGACTTAGCAAAGATGGAGCCTATCATAAACGTTGGAGGAATAATTGAAACCCGCAGAAAGTTAATATGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGAACTTGCAGAACTTCGTTTCATCCATTATGTGCGAGGGAGGCAAGACAGAGAATGGAAATTTGGGGAAAATATGGGTGCGATAATGTTGAGCTGAGGGCCTTTTGTTCAAAGCACTCAGAAGTGCCAGGTAACAACAACAGTCACTTAGTATCTCCCTCTGTCTCTGCTGACAAGAACTCAAATGTCTCCAACCATCTTCCTATGGCATTGTCGGAAAACAAATTACCCAAGTTAAGGATAGGCCCTAGAAATGGTGATAAAACTGCAGTACCTATTGAGGCTCTAGATGTTACTTCTGACAAATCGGGTGATGGTGAATCACAGGAGATGGTGTTTCCTATTCCAAGATTAGATCCTAGGCTGACATCGGAGTGTGGTAATGCACAGCCGATGATTAATGCAGGGGCATTTGAGAGAAGCAAAGAGGATGTTAATGCTTCTAATTCCCTTAAATTTTCTCTGATTTTAAAGAAGCTGATTGATTGTGGAAAAGTTAATGTGAAGGATGTGGCATTGGACGTTGGTCTCTCACCTGATTCTTTATCTGCATCACTTGCTGATGGTACTATGGTGCCTGATGTGCAAGGAAGAATAGTTAAATGGCTTAAAGACCATTCTAACTTGGATTTAAAGCAGAAAAATGGAAAAATGAAATTAAGATCAACAATTTCATCCATGGCTGAGTTTGGGGATTCTGATGGCTCTGAAGCTGCTTCATTATCGGAGTCTGATATGGCAGATGTAGCTGTTAAGTCAGTACCCCCACGGAGAAGAACCAAAAGCAGTATTAGGTTTCCGAAGGATGACAAAGTAATAAGCTCATCCAAGGGGATCTTTAATGACAATGGCACATTGGACAAGGTTAAGGTTGATCAACCTGTCACTGATGAACAAGAAAATTTAAGTAGAGCGTCTGTCCCTGATCCTGTTGAGAAGAATCCAACAAAGGCCGATGTGTTTCAACAATCTTTGCTGACACATTCACCTAGATCAGAAGGTCTTTTAGCTAAACCCTTGAATTGCAGCCTTTTGCAAATGGGTCAAGAGCAGTTGGCTACTATTCCTTTGCAGGGTACCTCAGCAATTGCAAATGAAGGTCAATTGTTTTCAGTTGCAAAACCGGTCATTCCTGAATTCAATAAATCTGAGGCTGAAGTTCCTGGTTTTTATGTCCATCCGTATATTGAAAATAAGTTGTTGCAGATGCAGACTGGGGTGTCCTTAGAAAATTCAATATATGGTTCAAGTGAGGGAGAAATTTCACGTCTGGAGGCATCCTCCCATGCAAGTGTTTGCTGTAATCACCAAAATAAGCATCCAAAATGCTGTGATATTATTTGTAAATCCGATGAGATGAAACTAGAACAGTTGGTTAAGGCTCGAAAAATGGGAGTTCTAGAAATCTGTCCAGGCGATGAAATGGAAGGAGAGCTTATTTATTACCAGCATAGGTTGCTCAACAATGCGATTGCAAGAAAGCATTTTACTGATAATTTGGTATCTAATGTTGCTAGGAGTCTTCCATTGGAGATTGATGCAGCACGGAGGCAAAAATGGGATGCTGTACTTGTTAACCAGTATCTTTGGGAGCTTAGGGAGGCAAAGAAGCAGGGTAGGAAGGAGAGACGGCATAAAGAAGCACAGGCTGTGCTAGCAGCTGCAACTGCTGCTGCTGCAGCCTCTTCTAGGATTTCATCATTTAGGAAAGAGGTTCTTGACGAATCTTGCCATCAGGAGAATGTGACGAAGTTGAATACTTCTAGTGGGAGGTCCAGCTTTTCCTCACAGATGATGCCACGACCTAAAGAGACATTTCCGAGGGTGGCTGTTCCCCGGATTTCTGTGGAAAAACACTCTGGTTTTGTTCATTCAGTCACTGATTCTTCCAAAGAACATCCTAGATCATATATATATATGTGTGTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1118

Amino Acids

122.16

Weight (kDa)

7.25

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2638
Acc65I GGTACC 1 cut(s) 2495
AccB1I GGYRCC 3 cut(s) 65, 1993, 2495
AccB7I CCANNNNNTGG 1 cut(s) 992
AciI CCGC 8 cut(s) 50, 63, 101, 304, 511, 573, 934, 1357
AclI AACGTT 2 cut(s) 528, 1335
AclWI GGATC 4 cut(s) 1255, 1769, 2261, 2339
AcsI RAATTY 9 cut(s) 108, 129, 997, 1479, 1874, 2320, 2555, 2650, 2679
AcuI CTGAAG 4 cut(s) 867, 897, 2148, 2595
AfaI GTAC 7 cut(s) 890, 1107, 1692, 1987, 2181, 2497, 2988
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 9 cut(s) 75, 224, 258, 494, 992, 1656, 1673, 2492, 3108
AgeI ACCGGT 1 cut(s) 2542
AhlI ACTAGT 1 cut(s) 1163
AjiI CACGTC 1 cut(s) 2687
AjnI CCWGG 3 cut(s) 1546, 2581, 2830
AjuI GAANNNNNNNTTGG 4 cut(s) 114, 146, 1465, 1497
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 8 cut(s) 380, 441, 987, 1588, 1612, 1952, 3040, 3224
AlwI GGATC 4 cut(s) 1255, 1769, 2261, 2339
AlwNI CAGNNNCTG 1 cut(s) 3299
Ama87I CYCGRG 2 cut(s) 218, 363
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 5 cut(s) 10, 77, 1518, 1663, 2370
ApoI RAATTY 9 cut(s) 108, 129, 997, 1479, 1874, 2320, 2555, 2650, 2679
AseI ATTAAT 1 cut(s) 1818
AsiGI ACCGGT 1 cut(s) 2542
Asp718I GGTACC 1 cut(s) 2495
AspA2I CCTAGG 3 cut(s) 92, 257, 1778
AspLEI GCGC 5 cut(s) 201, 329, 921, 1211, 1400
AspS9I GGNCC 4 cut(s) 360, 1518, 1664, 3192
AsuC2I CCSGG 3 cut(s) 364, 365, 3256
AsuHPI GGTGA 8 cut(s) 1040, 1399, 1688, 1742, 1748, 1944, 2397, 2717
AsuNHI GCTAGC 2 cut(s) 269, 3073
AvaI CYCGRG 2 cut(s) 218, 363
AvaII GGWCC 2 cut(s) 360, 3192
AvrII CCTAGG 3 cut(s) 92, 257, 1778
AxyI CCTNAGG 1 cut(s) 1290
BaeGI GKGCMC 1 cut(s) 246
BaeI ACNNNNGTAYC 4 cut(s) 1674, 1707, 1977, 2010
BanI GGYRCC 3 cut(s) 65, 1993, 2495
BanII GRGCYC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 3 cut(s) 783, 1160, 2933
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 2 cut(s) 1514, 2500
BceAI ACGGC 2 cut(s) 241, 3065
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 3 cut(s) 1548, 2583, 2832
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 2293
BcnI CCSGG 3 cut(s) 364, 365, 3256
BcoDI GTCTC 8 cut(s) 380, 441, 987, 1588, 1612, 1952, 3040, 3224
BcuI ACTAGT 1 cut(s) 1163
BfmI CTRYAG 2 cut(s) 1686, 3096
BfoI RGCGCY 5 cut(s) 202, 330, 922, 1212, 1401
BfuI GTATCC 1 cut(s) 454
BlnI CCTAGG 3 cut(s) 92, 257, 1778
BlpI GCTNAGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 6 cut(s) 364, 365, 1548, 2583, 2832, 3256
Bme18I GGWCC 2 cut(s) 360, 3192
BmeT110I CYCGRG 2 cut(s) 218, 363
BmgBI CACGTC 1 cut(s) 2687
BmgT120I GGNCC 4 cut(s) 360, 1518, 1664, 3192
BmiI GGNNCC 6 cut(s) 67, 99, 362, 1323, 1995, 2497
BmrFI CCNGG 6 cut(s) 364, 365, 1548, 2583, 2832, 3256
BmrI ACTGGG 1 cut(s) 2643
BmtI GCTAGC 2 cut(s) 273, 3077
BmuI ACTGGG 1 cut(s) 2643
BoxI GACNNNNGTC 1 cut(s) 1944
BpiI GAAGAC 3 cut(s) 783, 1160, 2933
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 2684, 2716
BpmI CTGGAG 1 cut(s) 2711
Bpu10I CCTNAGC 3 cut(s) 1514, 2500, 3014
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 3 cut(s) 364, 365, 3256
BsaI GGTCTC 1 cut(s) 1952
BsaWI WCCGGW 4 cut(s) 5, 124, 487, 2542
BsaXI ACNNNNNCTCC 6 cut(s) 534, 564, 956, 986, 1739, 1769
Bsc4I CCNNNNNNNGG 9 cut(s) 75, 224, 258, 494, 992, 1656, 1673, 2492, 3108
Bse118I RCCGGY 2 cut(s) 323, 2542
Bse1I ACTGG 3 cut(s) 1220, 2638, 2998
Bse21I CCTNAGG 1 cut(s) 1290
BseBI CCWGG 3 cut(s) 1548, 2583, 2832
BseLI CCNNNNNNNGG 9 cut(s) 75, 224, 258, 494, 992, 1656, 1673, 2492, 3108
BseNI ACTGG 3 cut(s) 1220, 2638, 2998
BseRI GAGGAG 2 cut(s) 86, 572
BseSI GKGCMC 1 cut(s) 246
BshFI GGCC 5 cut(s) 12, 79, 1520, 1665, 2372
BshNI GGYRCC 3 cut(s) 65, 1993, 2495
BshTI ACCGGT 1 cut(s) 2542
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 2 cut(s) 218, 363
BsiSI CCGG 8 cut(s) 6, 113, 125, 324, 364, 488, 2543, 3256
BslFI GGGAC 2 cut(s) 346, 2324
BslI CCNNNNNNNGG 9 cut(s) 75, 224, 258, 494, 992, 1656, 1673, 2492, 3108
BsmAI GTCTC 8 cut(s) 380, 441, 987, 1588, 1612, 1952, 3040, 3224
BsmBI CGTCTC 2 cut(s) 987, 3040
BsmFI GGGAC 2 cut(s) 346, 2324
BsmI GAATGC 5 cut(s) 520, 628, 658, 718, 805
BsnI GGCC 5 cut(s) 12, 79, 1520, 1665, 2372
Bso31I GGTCTC 1 cut(s) 1952
BsoBI CYCGRG 2 cut(s) 218, 363
Bsp1286I GDGCHC 2 cut(s) 152, 246
Bsp143I GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
Bsp1720I GCTNAGC 1 cut(s) 229
Bsp19I CCATGG 2 cut(s) 810, 2097
BspACI CCGC 8 cut(s) 50, 63, 101, 304, 511, 573, 934, 1357
BspANI GGCC 5 cut(s) 12, 79, 1520, 1665, 2372
BspLI GGNNCC 6 cut(s) 67, 99, 362, 1323, 1995, 2497
BspMAI CTGCAG 2 cut(s) 1690, 3100
BspOI GCTAGC 2 cut(s) 273, 3077
BspPI GGATC 4 cut(s) 1255, 1769, 2261, 2339
BspT107I GGYRCC 3 cut(s) 65, 1993, 2495
BspTNI GGTCTC 1 cut(s) 1952
BsrFI RCCGGY 2 cut(s) 323, 2542
BsrI ACTGG 3 cut(s) 1220, 2638, 2998
BssAI RCCGGY 2 cut(s) 323, 2542
BssMI GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 6 cut(s) 92, 257, 810, 1778, 2097, 2247
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 1548, 2583, 2832
Bst4CI ACNGT 3 cut(s) 752, 1562, 2790
Bst6I CTCTTC 2 cut(s) 332, 3109
BstAPI GCANNNNNTGC 4 cut(s) 632, 1976, 2875, 3089
BstC8I GCNNGC 5 cut(s) 177, 271, 321, 325, 3075
BstDSI CCRYGG 3 cut(s) 810, 2097, 2186
BstENI CCTNNNNNAGG 2 cut(s) 256, 3106
BstH2I RGCGCY 5 cut(s) 202, 330, 922, 1212, 1401
BstHHI GCGC 5 cut(s) 201, 329, 921, 1211, 1400
BstKTI GATC 9 cut(s) 664, 1250, 1777, 2084, 2256, 2296, 2347, 2414, 3326
BstMAI GTCTC 8 cut(s) 380, 441, 987, 1588, 1612, 1952, 3040, 3224
BstMBI GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
BstNI CCWGG 3 cut(s) 1548, 2583, 2832
BstNSI RCATGY 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 1944
BstSCI CCNGG 6 cut(s) 362, 363, 1546, 2581, 2830, 3254
BstSFI CTRYAG 2 cut(s) 1686, 3096
BstSLI GKGCMC 1 cut(s) 246
BstV2I GAAGAC 3 cut(s) 783, 1160, 2933
BstX2I RGATCY 3 cut(s) 1247, 1774, 2253
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 3 cut(s) 1247, 1774, 2253
Bsu36I CCTNAGG 1 cut(s) 1290
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 5 cut(s) 12, 79, 1520, 1665, 2372
BtgI CCRYGG 3 cut(s) 810, 2097, 2186
BtgZI GCGATG 1 cut(s) 2850
BtrI CACGTC 1 cut(s) 2687
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 5 cut(s) 413, 559, 1286, 2304, 3297
Cac8I GCNNGC 5 cut(s) 177, 271, 321, 325, 3075
CaiI CAGNNNCTG 1 cut(s) 3299
CfoI GCGC 5 cut(s) 201, 329, 921, 1211, 1400
Cfr10I RCCGGY 2 cut(s) 323, 2542
Cfr13I GGNCC 4 cut(s) 360, 1518, 1664, 3192
Cfr9I CCCGGG 1 cut(s) 363
CseI GACGC 2 cut(s) 969, 2322
Csp6I GTAC 7 cut(s) 889, 1106, 1691, 1986, 2180, 2496, 2987
CspAI ACCGGT 1 cut(s) 2542
CviQI GTAC 7 cut(s) 889, 1106, 1691, 1986, 2180, 2496, 2987
DpnI GATC 9 cut(s) 663, 1249, 1776, 2083, 2255, 2295, 2346, 2413, 3325
DpnII GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
DraI TTTAAA 3 cut(s) 1215, 1890, 2052
DrdI GACNNNNNNGTC 1 cut(s) 2638
DseDI GACNNNNNNGTC 1 cut(s) 2638
Eam1104I CTCTTC 2 cut(s) 332, 3109
EarI CTCTTC 2 cut(s) 332, 3109
EciI GGCGGA 2 cut(s) 90, 526
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 6 cut(s) 92, 257, 810, 1778, 2097, 2247
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 1952
Eco47I GGWCC 2 cut(s) 360, 3192
Eco47III AGCGCT 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 4 cut(s) 867, 897, 2148, 2595
Eco81I CCTNAGG 1 cut(s) 1290
Eco88I CYCGRG 2 cut(s) 218, 363
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 2 cut(s) 256, 3106
EcoO109I RGGNCCY 3 cut(s) 360, 1518, 1664
EcoRI GAATTC 2 cut(s) 997, 2555
EcoRII CCWGG 3 cut(s) 1546, 2581, 2830
EcoT14I CCWWGG 6 cut(s) 92, 257, 810, 1778, 2097, 2247
EcoT22I ATGCAT 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 6 cut(s) 92, 257, 810, 1778, 2097, 2247
Esp3I CGTCTC 2 cut(s) 987, 3040
FalI AAGNNNNNCTT 6 cut(s) 2240, 2272, 2838, 2870, 3120, 3152
FaqI GGGAC 2 cut(s) 346, 2324
FauI CCCGC 1 cut(s) 1364
FauNDI CATATG 1 cut(s) 1379
FbaI TGATCA 1 cut(s) 2293
FriOI GRGCYC 1 cut(s) 152
GlaI GCGC 5 cut(s) 200, 328, 920, 1210, 1399
GsuI CTGGAG 1 cut(s) 2711
HaeII RGCGCY 5 cut(s) 202, 330, 922, 1212, 1401
HaeIII GGCC 5 cut(s) 12, 79, 1520, 1665, 2372
HapII CCGG 8 cut(s) 6, 113, 125, 324, 364, 488, 2543, 3256
HgaI GACGC 2 cut(s) 969, 2322
HhaI GCGC 5 cut(s) 201, 329, 921, 1211, 1400
Hin6I GCGC 5 cut(s) 199, 327, 919, 1209, 1398
HinP1I GCGC 5 cut(s) 199, 327, 919, 1209, 1398
HincII GTYRAC 1 cut(s) 2995
HindII GTYRAC 1 cut(s) 2995
HpaI GTTAAC 1 cut(s) 2995
HpaII CCGG 8 cut(s) 6, 113, 125, 324, 364, 488, 2543, 3256
HphI GGTGA 8 cut(s) 1040, 1399, 1688, 1742, 1748, 1944, 2397, 2717
Hpy166II GTNNAC 2 cut(s) 1264, 2995
Hpy8I GTNNAC 2 cut(s) 1264, 2995
Hpy99I CGWCG 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 752, 1562, 2790
HpyCH4IV ACGT 4 cut(s) 528, 1335, 1941, 2686
HpySE526I ACGT 4 cut(s) 528, 1335, 1941, 2686
HspAI GCGC 5 cut(s) 199, 327, 919, 1209, 1398
KpnI GGTACC 1 cut(s) 2499
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 2293
KspAI GTTAAC 1 cut(s) 2995
Kzo9I GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
LmnI GCTCC 3 cut(s) 830, 1321, 3010
MaeII ACGT 4 cut(s) 528, 1335, 1941, 2686
MaeIII GTNAC 8 cut(s) 17, 1373, 1550, 1562, 1711, 2302, 3163, 3295
MalI GATC 9 cut(s) 663, 1249, 1776, 2083, 2255, 2295, 2346, 2413, 3325
MboI GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
MfeI CAATTG 2 cut(s) 2505, 2522
MflI RGATCY 3 cut(s) 1247, 1774, 2253
MhlI GDGCHC 2 cut(s) 152, 246
MlyI GAGTC 3 cut(s) 1052, 2156, 2947
MmeI TCCRAC 6 cut(s) 270, 1060, 1318, 1614, 1635, 2387
Mph1103I ATGCAT 1 cut(s) 1126
MroNI GCCGGC 1 cut(s) 323
MslI CAYNNNNRTG 6 cut(s) 380, 641, 1006, 1132, 1792, 2709
MspA1I CMGCKG 1 cut(s) 3080
MspI CCGG 8 cut(s) 6, 113, 125, 324, 364, 488, 2543, 3256
MspR9I CCNGG 6 cut(s) 364, 365, 1548, 2583, 2832, 3256
MunI CAATTG 2 cut(s) 2505, 2522
Mva1269I GAATGC 5 cut(s) 520, 628, 658, 718, 805
MvaI CCWGG 3 cut(s) 1548, 2583, 2832
NaeI GCCGGC 1 cut(s) 325
NciI CCSGG 3 cut(s) 364, 365, 3256
NcoI CCATGG 2 cut(s) 810, 2097
NdeI CATATG 1 cut(s) 1379
NdeII GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
NgoMIV GCCGGC 1 cut(s) 323
NheI GCTAGC 2 cut(s) 269, 3073
NlaIV GGNNCC 6 cut(s) 67, 99, 362, 1323, 1995, 2497
NmuCI GTSAC 5 cut(s) 17, 1562, 2302, 3163, 3295
NsiI ATGCAT 1 cut(s) 1126
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PceI AGGCCT 1 cut(s) 79
PctI GAATGC 5 cut(s) 520, 628, 658, 718, 805
PdiI GCCGGC 1 cut(s) 325
PfeI GAWTC 8 cut(s) 484, 1169, 1739, 1958, 2114, 2359, 3143, 3302
PflMI CCANNNNNTGG 1 cut(s) 992
PinAI ACCGGT 1 cut(s) 2542
PleI GAGTC 3 cut(s) 1051, 2155, 2946
PpsI GAGTC 3 cut(s) 1051, 2155, 2946
PpuMI RGGWCCY 1 cut(s) 360
PshAI GACNNNNGTC 1 cut(s) 1944
PshBI ATTAAT 1 cut(s) 1818
Psp124BI GAGCTC 1 cut(s) 152
Psp1406I AACGTT 2 cut(s) 528, 1335
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 1546, 2581, 2830
PspGI CCWGG 3 cut(s) 1546, 2581, 2830
PspN4I GGNNCC 6 cut(s) 67, 99, 362, 1323, 1995, 2497
PspPI GGNCC 4 cut(s) 360, 1518, 1664, 3192
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 2 cut(s) 1690, 3100
PstNI CAGNNNCTG 1 cut(s) 3299
PsuI RGATCY 3 cut(s) 1247, 1774, 2253
PvuII CAGCTG 1 cut(s) 3080
RsaI GTAC 7 cut(s) 890, 1107, 1692, 1987, 2181, 2497, 2988
RsaNI GTAC 7 cut(s) 889, 1106, 1691, 1986, 2180, 2496, 2987
RseI CAYNNNNRTG 6 cut(s) 380, 641, 1006, 1132, 1792, 2709
SacI GAGCTC 1 cut(s) 152
Sau3AI GATC 9 cut(s) 661, 1247, 1774, 2081, 2253, 2293, 2344, 2411, 3323
Sau96I GGNCC 4 cut(s) 360, 1518, 1664, 3192
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 3 cut(s) 1052, 2156, 2947
ScrFI CCNGG 6 cut(s) 364, 365, 1548, 2583, 2832, 3256
SduI GDGCHC 2 cut(s) 152, 246
SfcI CTRYAG 2 cut(s) 1686, 3096
SinI GGWCC 2 cut(s) 360, 3192
SmaI CCCGGG 1 cut(s) 365
SmiMI CAYNNNNRTG 6 cut(s) 380, 641, 1006, 1132, 1792, 2709
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 1163
SphI GCATGC 1 cut(s) 323
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 8 cut(s) 50, 63, 101, 304, 511, 573, 934, 1357
SstI GAGCTC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 6 cut(s) 362, 363, 1546, 2581, 2830, 3254
StyI CCWWGG 6 cut(s) 92, 257, 810, 1778, 2097, 2247
TaaI ACNGT 3 cut(s) 752, 1562, 2790
TaiI ACGT 4 cut(s) 531, 1338, 1944, 2689
TaqI TCGA 7 cut(s) 146, 236, 281, 298, 774, 1408, 2803
TatI WGTACW 2 cut(s) 1105, 2986
TauI GCSGC 2 cut(s) 66, 307
TfiI GAWTC 8 cut(s) 484, 1169, 1739, 1958, 2114, 2359, 3143, 3302
TscAI CASTG 5 cut(s) 420, 559, 1286, 2311, 3304
TseFI GTSAC 5 cut(s) 17, 1562, 2302, 3163, 3295
Tsp45I GTSAC 5 cut(s) 17, 1562, 2302, 3163, 3295
TspGWI ACGGA 5 cut(s) 69, 555, 2203, 2589, 2980
TspMI CCCGGG 1 cut(s) 363
TspRI CASTG 5 cut(s) 420, 559, 1286, 2311, 3304
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 2 cut(s) 360, 3192
VspI ATTAAT 1 cut(s) 1818
XagI CCTNNNNNAGG 2 cut(s) 256, 3106
XapI RAATTY 9 cut(s) 108, 129, 997, 1479, 1874, 2320, 2555, 2650, 2679
XbaI TCTAGA 3 cut(s) 133, 1705, 2818
XceI RCATGY 1 cut(s) 323
XmaI CCCGGG 1 cut(s) 363
XmaJI CCTAGG 3 cut(s) 92, 257, 1778
ZrmI AGTACT 1 cut(s) 1107
Zsp2I ATGCAT 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.