Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250701.1

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 789

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 461 bp

ccttttgcaaaaaggtcaagaagtggtgactattactcctttgcagaccaactcggtgattgcaaatgtagatccatcgttttcagttgaaaaaccagttcctgaaagcaagaaatcgggggcagaagctcctagttcttatgtccacccgcctatgcagaagacattgtcacagatggagaacggggtgtctctaaagaatccaatacatggttcaagtcaaggagaagtctctcgtgtggaggcatcttcccatgcaagtgtttgctgtaatcatcaaaatacacatccaaaatgttatgatacgatttgtaaaactgatgagaggaatttagaacagttggctaaggctcgtaaactgggagttctagaaatgtctccagaagatgaagtggaaggagaactcatttattatcagcataggttgcaaaacaatataactgcgagaaagcattatactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

6.4

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	210
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	90, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	196, 236, 382
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	38, 68
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	2 cut(s)	83, 170
BcoDI	GTCTC	3 cut(s)	196, 236, 382
BfaI	CTAG	2 cut(s)	133, 369
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	96, 364
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	96, 364
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	196, 236, 382
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	96, 364
BssMI	GATC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	287
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	3 cut(s)	196, 236, 382
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	287
CaiI	CAGNNNCTG	1 cut(s)	102
CviAII	CATG	2 cut(s)	210, 255
CviJI	RGCY	3 cut(s)	129, 345, 351
CviKI_1	RGCY	3 cut(s)	129, 345, 351
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
FaeI	CATG	2 cut(s)	213, 258
FaiI	YATR	8 cut(s)	142, 156, 211, 256, 301, 421, 438, 457
FatI	CATG	2 cut(s)	209, 254
FauI	CCCGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	274
FspBI	CTAG	2 cut(s)	133, 369
GsuI	CTGGAG	1 cut(s)	364
Hin1II	CATG	2 cut(s)	213, 258
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	38, 68
Hpy166II	GTNNAC	2 cut(s)	146, 357
Hpy188III	TCNNGA	4 cut(s)	18, 102, 369, 381
Hpy8I	GTNNAC	2 cut(s)	146, 357
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	8, 44, 63, 158, 258, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	213, 258
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	109, 115, 345, 394
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	133, 369
MaeIII	GTNAC	2 cut(s)	26, 169
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	173, 241, 396
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	1 cut(s)	329
MnlI	CCTC	2 cut(s)	236, 319
MslI	CAYNNNNRTG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	213, 258
NmuCI	GTSAC	2 cut(s)	26, 169
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	71
SetI	ASST	3 cut(s)	17, 131, 426
SfaNI	GCATC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	133, 369
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	26, 169
Tsp45I	GTSAC	2 cut(s)	26, 169
TspDTI	ATGAA	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	329
XbaI	TCTAGA	1 cut(s)	368
XspI	CTAG	2 cut(s)	133, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.