Rh7CG512700

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004120
Physical Location & Seq
Reverse (-)
69169599 .. 69178405
8807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG512700.1

Sequence Viewer

Length: 4545 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGATGGAGGTTGCGGCACCGAGGAGAAGCCTTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTCCTAAAAAGTCGGGGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTGGTTGAGGACGCCTCGGCCTCAGCCTCAGCCTCAGCCTCAGCTGCTGCTGCTCCTTCTTCTTCCTCGAGTGTGGTCCCCACCACCACCTTGCCGAGGGGGTTGGCTAGCTTCTTGTCCAGGCAATCTGATAGCCGGAAGCGGCACAAGAAGTCGCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTTGAAGGGGTATAGTGTGTGGGCAGAGACAGAGGAGTACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCTGCTGCTAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTGGTAATTCGAATGAGACTGTAAATGGTGGCAATGCTAATGAGGTTGCCGCCGAGGATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGATGAGATTGTGAATGGCGGGAATGCTAGTGAGGTTGTTGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTAGTTGAAAAGGTTAATGAGAATGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACGGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTTCTGTTTCGGATTCTGATTCTCCCAGGGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACTTCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTCGGTGCTGATGCAGGGTTGGAGAAAGTCCTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCGATTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGACGTAGATGCATCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGAAGAATGGTAATAGTGGTGGATCTCCGGAGTTTGCCCACTTGTTTTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCAGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGCGGTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGGTAAATTCGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGACGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCTTCACTTGCTGATGATAGCATGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAACTTAAGACCGTCATTTGCATCATTGGCCGAGTTTGGAGGTTCTGATGCTCCATTATCAGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGAGATTCCGCTGGACAAGATTAAATTAGATAAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCCATCAGTGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTCTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTCGGTGATTGCAAATGTAGATCCATCGTTTTCAGTTGAAAAACCAGTTCCTGAAAGCAAGAAATCGGGGGCAGAAGCTCCTAGTTCTTATGTCCACCCGCCTATGCAGAAGACATTATCACAGATGGAGAACGGGGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGATGAGAGGAATTTAGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTATCAGCATAGGTTGCAAAACAATATAACTGTGAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATTGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAACCAATATCTTTGCGAGCTTCGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCGTTGATGAACACCCCCAGCAGGAGAATGTGGTGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCTGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGCCAATGTTTGGGAGAAAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAATGTAAAAACTCTCGGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTCTATACAATAAGGGCTGAGCTGGAGAGATTACGCCTTATTTGCGAAAGAATTATCAAACGGGAAAAAGTAAAGAGGGAATTACTCATTTGTTCACATGACCTTCTCGCTGTGAAAAGAGATCATGTTGCCCGTTCCGTGCTTGTTAACAGTCCTTTCTTGCTACCGGATGCTAGTTCTGAATCAGCAACAACTTCTCTTAAAGCGCAGACAGATGATTACAGGTCATGCAGTGAGACATTCCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCTGTTAGGCACAGGACTAGAGTTCCTATAACTATTGATAACGACCAAAAGACAGATGATGACAGCTCCACATCCCAAAATCAATTTACCCACAATCTTTCGGATAGGATGCAATTTTCTGAGAAACAGATTCCATTCAGACCTTCTGCCGTGACTTGTAATCTTTCAGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCATGCCGAGATGTTTTCGAAAGAACTGGTGATGACATCAGATCAAGCATCGGTGAAAAATATGCTATTACCCAAAGGATATGCATATGTTCCTGCTGATTGCATTCCAAATGAGAAGCAGGCCAACCAGGATACTTGTTCTGGTGAACGACCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1514

Amino Acids

165.95

Weight (kDa)

6.65

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 376 - 409 2.3e-09 PHD-finger
zf-HC5HC2H_2 PF13832 420 - 538 2.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 448 - 539 2.9e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1124 - 1157 9.8e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1173 - 1279 1e-18 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1194 - 1280 4.5e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 2 cut(s) 2669, 3492
AccBSI CCGCTC 1 cut(s) 196
AccIII TCCGGA 1 cut(s) 1330
AclWI GGATC 6 cut(s) 1333, 1646, 1659, 2073, 2162, 2525
AcoI YGGCCR 2 cut(s) 2118, 3727
AcsI RAATTY 8 cut(s) 132, 538, 1557, 1675, 1799, 1847, 2788, 3698
AcuI CTGAAG 3 cut(s) 918, 1325, 1767
AcyI GRCGYC 3 cut(s) 222, 374, 1965
AfaI GTAC 5 cut(s) 446, 1623, 2190, 3455, 4171
AflII CTTAAG 1 cut(s) 2095
AjiI CACGTC 1 cut(s) 1939
AjnI CCWGG 4 cut(s) 176, 329, 941, 4503
AjuI GAANNNNNNNTTGG 4 cut(s) 1543, 1575, 2656, 2688
AleI CACNNNNGTG 1 cut(s) 3288
Alw21I GWGCWC 2 cut(s) 2385, 3188
AlwI GGATC 6 cut(s) 1333, 1646, 1659, 2073, 2162, 2525
AlwNI CAGNNNCTG 6 cut(s) 257, 1915, 2156, 2171, 2561, 3107
Ama87I CYCGRG 2 cut(s) 277, 554
Aor13HI TCCGGA 1 cut(s) 1330
AoxI GGCC 9 cut(s) 10, 174, 183, 228, 2118, 2262, 3667, 3727, 4497
ApoI RAATTY 8 cut(s) 132, 538, 1557, 1675, 1799, 1847, 2788, 3698
ArsI GACNNNNNNTTYG 2 cut(s) 3690, 3722
Asp700I GAANNNNTTC 1 cut(s) 1598
AspA2I CCTAGG 1 cut(s) 3329
AspLEI GCGC 3 cut(s) 999, 1478, 4105
AspS9I GGNCC 7 cut(s) 286, 2011, 2324, 3201, 3446, 3577, 3667
AsuC2I CCSGG 1 cut(s) 394
AsuII TTCGAA 2 cut(s) 626, 4394
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 2 cut(s) 277, 554
AvaII GGWCC 6 cut(s) 286, 2011, 2324, 3201, 3446, 3577
AvrII CCTAGG 1 cut(s) 3329
BalI TGGCCA 1 cut(s) 3729
BamHI GGATCC 1 cut(s) 1651
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1578
BauI CACGAG 1 cut(s) 2694
BbsI GAAGAC 3 cut(s) 1197, 2627, 3477
Bbv12I GWGCWC 2 cut(s) 2385, 3188
BbvCI CCTCAGC 5 cut(s) 232, 238, 244, 250, 486
BceAI ACGGC 3 cut(s) 187, 3074, 4310
BciT130I CCWGG 4 cut(s) 178, 331, 943, 4505
BciVI GTATCC 2 cut(s) 4349, 4501
BcnI CCSGG 1 cut(s) 394
BfmI CTRYAG 6 cut(s) 2172, 3099, 3346, 3441, 3513, 4161
BfoI RGCGCY 2 cut(s) 1000, 1479
BfrI CTTAAG 1 cut(s) 2095
BfuI GTATCC 2 cut(s) 4349, 4501
BglI GCCNNNNNGGC 1 cut(s) 182
BlnI CCTAGG 1 cut(s) 3329
BlpI GCTNAGC 2 cut(s) 3182, 3915
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 5 cut(s) 178, 331, 394, 943, 4505
Bme18I GGWCC 6 cut(s) 286, 2011, 2324, 3201, 3446, 3577
BmeT110I CYCGRG 2 cut(s) 277, 554
BmgBI CACGTC 1 cut(s) 1939
BmgT120I GGNCC 7 cut(s) 286, 2011, 2324, 3201, 3446, 3577, 3667
BmiI GGNNCC 8 cut(s) 70, 102, 288, 1401, 1653, 1886, 2013, 3578
BmrFI CCNGG 5 cut(s) 178, 331, 394, 943, 4505
BmrI ACTGGG 1 cut(s) 2828
BmtI GCTAGC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 2828
BpiI GAAGAC 3 cut(s) 1197, 2627, 3477
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 2 cut(s) 2823, 3941
Bpu10I CCTNAGC 7 cut(s) 232, 238, 244, 250, 481, 486, 2805
Bpu1102I GCTNAGC 2 cut(s) 3182, 3915
Bpu14I TTCGAA 2 cut(s) 626, 4394
BpuEI CTTGAG 1 cut(s) 3863
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 2933
BsaBI GATNNNNATC 1 cut(s) 3420
BsaHI GRCGYC 3 cut(s) 222, 374, 1965
BsaWI WCCGGW 4 cut(s) 5, 1330, 1426, 4063
BsaXI ACNNNNNCTCC 2 cut(s) 2479, 2509
Bse1I ACTGG 7 cut(s) 1240, 1298, 2555, 2823, 3390, 3547, 4407
Bse3DI GCAATG 3 cut(s) 461, 655, 2030
Bse8I GATNNNNATC 1 cut(s) 3420
BseAI TCCGGA 1 cut(s) 1330
BseBI CCWGG 4 cut(s) 178, 331, 943, 4505
BseJI GATNNNNATC 1 cut(s) 3420
BseMI GCAATG 3 cut(s) 461, 655, 2030
BseNI ACTGG 7 cut(s) 1240, 1298, 2555, 2823, 3390, 3547, 4407
BseRI GAGGAG 6 cut(s) 89, 455, 617, 857, 1870, 2215
BseYI CCCAGC 1 cut(s) 3159
BsgI GTGCAG 2 cut(s) 3312, 3739
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 9 cut(s) 12, 176, 185, 230, 2120, 2264, 3669, 3729, 4499
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 2385, 3188
BsiHKCI CYCGRG 2 cut(s) 277, 554
BsiSI CCGG 8 cut(s) 6, 116, 128, 346, 394, 1331, 1427, 4064
BslFI GGGAC 5 cut(s) 272, 600, 1997, 3245, 3639
BsmBI CGTCTC 3 cut(s) 1972, 3049, 3353
BsmFI GGGAC 5 cut(s) 272, 600, 1997, 3245, 3639
BsmI GAATGC 7 cut(s) 367, 388, 691, 736, 766, 1612, 4479
BsnI GGCC 9 cut(s) 12, 176, 185, 230, 2120, 2264, 3669, 3729, 4499
BsoBI CYCGRG 2 cut(s) 277, 554
Bsp119I TTCGAA 2 cut(s) 626, 4394
Bsp1286I GDGCHC 3 cut(s) 1578, 2385, 3188
Bsp13I TCCGGA 1 cut(s) 1330
Bsp143I GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
Bsp1720I GCTNAGC 2 cut(s) 3182, 3915
Bsp19I CCATGG 1 cut(s) 3449
BspANI GGCC 9 cut(s) 12, 176, 185, 230, 2120, 2264, 3669, 3729, 4499
BspEI TCCGGA 1 cut(s) 1330
BspHI TCATGA 1 cut(s) 1407
BspLI GGNNCC 8 cut(s) 70, 102, 288, 1401, 1653, 1886, 2013, 3578
BspMAI CTGCAG 3 cut(s) 3103, 3350, 3517
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 6 cut(s) 1333, 1646, 1659, 2073, 2162, 2525
BspT104I TTCGAA 2 cut(s) 626, 4394
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 2095
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 3 cut(s) 461, 655, 2030
BsrI ACTGG 7 cut(s) 1240, 1298, 2555, 2823, 3390, 3547, 4407
BssMI GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
BssNI GRCGYC 3 cut(s) 222, 374, 1965
BssSI CACGAG 1 cut(s) 2694
BssT1I CCWWGG 3 cut(s) 3248, 3329, 3449
Bst2BI CACGAG 1 cut(s) 2694
Bst2UI CCWGG 4 cut(s) 178, 331, 943, 4505
Bst6I CTCTTC 4 cut(s) 834, 894, 2337, 3118
BstACI GRCGYC 3 cut(s) 222, 374, 1965
BstAFI CTTAAG 1 cut(s) 2095
BstAPI GCANNNNNTGC 4 cut(s) 2884, 3098, 3107, 3717
BstBAI YACGTR 1 cut(s) 2933
BstBI TTCGAA 2 cut(s) 626, 4394
BstC8I GCNNGC 7 cut(s) 319, 1504, 2262, 3020, 3806, 4380, 4497
BstDSI CCRYGG 3 cut(s) 2195, 3227, 3449
BstENI CCTNNNNNAGG 2 cut(s) 304, 3115
BstH2I RGCGCY 2 cut(s) 1000, 1479
BstHHI GCGC 3 cut(s) 999, 1478, 4105
BstKTI GATC 9 cut(s) 1328, 1654, 1817, 2068, 2170, 2533, 4021, 4148, 4420
BstMBI GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
BstMCI CGRYCG 1 cut(s) 200
BstNI CCWGG 4 cut(s) 178, 331, 943, 4505
BstNSI RCATGY 1 cut(s) 4382
BstSCI CCNGG 5 cut(s) 176, 329, 392, 941, 4503
BstSFI CTRYAG 6 cut(s) 2172, 3099, 3346, 3441, 3513, 4161
BstSNI TACGTA 1 cut(s) 2933
BstV2I GAAGAC 3 cut(s) 1197, 2627, 3477
BstX2I RGATCY 5 cut(s) 1325, 1651, 2065, 2167, 2530
BstYI RGATCY 5 cut(s) 1325, 1651, 2065, 2167, 2530
BsuI GTATCC 2 cut(s) 4349, 4501
BsuRI GGCC 9 cut(s) 12, 176, 185, 230, 2120, 2264, 3669, 3729, 4499
BtgI CCRYGG 3 cut(s) 2195, 3227, 3449
BtrI CACGTC 1 cut(s) 1939
BtsI GCAGTG 1 cut(s) 4135
Cac8I GCNNGC 7 cut(s) 319, 1504, 2262, 3020, 3806, 4380, 4497
CaiI CAGNNNCTG 6 cut(s) 257, 1915, 2156, 2171, 2561, 3107
CciI TCATGA 1 cut(s) 1407
CfoI GCGC 3 cut(s) 999, 1478, 4105
Cfr13I GGNCC 7 cut(s) 286, 2011, 2324, 3201, 3446, 3577, 3667
CseI GACGC 4 cut(s) 230, 363, 1954, 3702
Csp6I GTAC 5 cut(s) 445, 1622, 2189, 3454, 4170
CspCI CAANNNNNGTGG 2 cut(s) 1331, 1366
CviQI GTAC 5 cut(s) 445, 1622, 2189, 3454, 4170
DpnI GATC 9 cut(s) 1327, 1653, 1816, 2067, 2169, 2532, 4020, 4147, 4419
DpnII GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
DraI TTTAAA 1 cut(s) 2229
EaeI YGGCCR 2 cut(s) 2118, 3727
Eam1104I CTCTTC 4 cut(s) 834, 894, 2337, 3118
EarI CTCTTC 4 cut(s) 834, 894, 2337, 3118
EciI GGCGGA 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 2933
Eco130I CCWWGG 3 cut(s) 3248, 3329, 3449
Eco147I AGGCCT 2 cut(s) 185, 2264
Eco24I GRGCYC 1 cut(s) 1578
Eco32I GATATC 2 cut(s) 3313, 3343
Eco47I GGWCC 6 cut(s) 286, 2011, 2324, 3201, 3446, 3577
Eco57I CTGAAG 3 cut(s) 918, 1325, 1767
Eco88I CYCGRG 2 cut(s) 277, 554
EcoNI CCTNNNNNAGG 2 cut(s) 304, 3115
EcoO109I RGGNCCY 1 cut(s) 3667
EcoRI GAATTC 1 cut(s) 1675
EcoRII CCWGG 4 cut(s) 176, 329, 941, 4503
EcoRV GATATC 2 cut(s) 3313, 3343
EcoT14I CCWWGG 3 cut(s) 3248, 3329, 3449
EcoT22I ATGCAT 3 cut(s) 1204, 1879, 4462
EcoT38I GRGCYC 1 cut(s) 1578
ErhI CCWWGG 3 cut(s) 3248, 3329, 3449
Esp3I CGTCTC 3 cut(s) 1972, 3049, 3353
FaqI GGGAC 5 cut(s) 272, 600, 1997, 3245, 3639
FauI CCCGC 3 cut(s) 719, 1442, 2616
FauNDI CATATG 2 cut(s) 1457, 4462
FriOI GRGCYC 1 cut(s) 1578
GlaI GCGC 3 cut(s) 998, 1477, 4104
GsaI CCCAGC 1 cut(s) 3163
GsuI CTGGAG 2 cut(s) 2823, 3941
HaeII RGCGCY 2 cut(s) 1000, 1479
HaeIII GGCC 9 cut(s) 12, 176, 185, 230, 2120, 2264, 3669, 3729, 4499
HapII CCGG 8 cut(s) 6, 116, 128, 346, 394, 1331, 1427, 4064
HgaI GACGC 4 cut(s) 230, 363, 1954, 3702
HhaI GCGC 3 cut(s) 999, 1478, 4105
Hin1I GRCGYC 3 cut(s) 222, 374, 1965
Hin6I GCGC 3 cut(s) 997, 1476, 4103
HinP1I GCGC 3 cut(s) 997, 1476, 4103
HincII GTYRAC 4 cut(s) 1936, 3004, 3612, 4045
HindII GTYRAC 4 cut(s) 1936, 3004, 3612, 4045
HpaI GTTAAC 2 cut(s) 3004, 4045
HpaII CCGG 8 cut(s) 6, 116, 128, 346, 394, 1331, 1427, 4064
Hpy166II GTNNAC 9 cut(s) 1936, 2605, 2816, 3004, 3409, 3612, 3992, 4045, 4523
Hpy188III TCNNGA 9 cut(s) 554, 1331, 1408, 1852, 2477, 2561, 2828, 2840, 3026
Hpy8I GTNNAC 9 cut(s) 1936, 2605, 2816, 3004, 3409, 3612, 3992, 4045, 4523
Hpy99I CGWCG 2 cut(s) 379, 3696
HpyCH4IV ACGT 4 cut(s) 1194, 1938, 2932, 3352
HpySE526I ACGT 4 cut(s) 1194, 1938, 2932, 3352
Hsp92I GRCGYC 3 cut(s) 222, 374, 1965
HspAI GCGC 3 cut(s) 997, 1476, 4103
Kpn2I TCCGGA 1 cut(s) 1330
KspAI GTTAAC 2 cut(s) 3004, 4045
Kzo9I GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
LmnI GCTCC 6 cut(s) 268, 856, 1857, 2146, 2593, 4247
MaeII ACGT 4 cut(s) 1194, 1938, 2932, 3352
MaeIII GTNAC 9 cut(s) 17, 1451, 1702, 1710, 2270, 2391, 2485, 4156, 4327
MalI GATC 9 cut(s) 1327, 1653, 1816, 2067, 2169, 2532, 4020, 4147, 4419
MbiI CCGCTC 1 cut(s) 196
MboI GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
MflI RGATCY 5 cut(s) 1325, 1651, 2065, 2167, 2530
MhlI GDGCHC 3 cut(s) 1578, 2385, 3188
MlsI TGGCCA 1 cut(s) 3729
MluNI TGGCCA 1 cut(s) 3729
MlyI GAGTC 6 cut(s) 115, 1130, 2162, 2354, 2956, 3617
MmeI TCCRAC 4 cut(s) 357, 1020, 1396, 1935
Mox20I TGGCCA 1 cut(s) 3729
Mph1103I ATGCAT 3 cut(s) 1204, 1879, 4462
MroI TCCGGA 1 cut(s) 1330
MroXI GAANNNNTTC 1 cut(s) 1598
MscI TGGCCA 1 cut(s) 3729
MslI CAYNNNNRTG 4 cut(s) 1084, 1210, 2718, 3288
Msp20I TGGCCA 1 cut(s) 3729
MspA1I CMGCKG 4 cut(s) 254, 2287, 3089, 3104
MspCI CTTAAG 1 cut(s) 2095
MspI CCGG 8 cut(s) 6, 116, 128, 346, 394, 1331, 1427, 4064
MspR9I CCNGG 5 cut(s) 178, 331, 394, 943, 4505
Mva1269I GAATGC 7 cut(s) 367, 388, 691, 736, 766, 1612, 4479
MvaI CCWGG 4 cut(s) 178, 331, 943, 4505
NciI CCSGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 3449
NdeI CATATG 2 cut(s) 1457, 4462
NdeII GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
NheI GCTAGC 1 cut(s) 317
NlaIV GGNNCC 8 cut(s) 70, 102, 288, 1401, 1653, 1886, 2013, 3578
NmeAIII GCCGAG 5 cut(s) 206, 330, 694, 2146, 4408
NmuCI GTSAC 7 cut(s) 17, 1702, 1710, 2270, 2485, 4156, 4327
NsiI ATGCAT 3 cut(s) 1204, 1879, 4462
NspI RCATGY 1 cut(s) 4382
NspV TTCGAA 2 cut(s) 626, 4394
OliI CACNNNNGTG 1 cut(s) 3288
PaeI GCATGC 1 cut(s) 4382
PaeR7I CTCGAG 1 cut(s) 277
PagI TCATGA 1 cut(s) 1407
PasI CCCWGGG 1 cut(s) 942
PceI AGGCCT 2 cut(s) 185, 2264
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 7 cut(s) 367, 388, 691, 736, 766, 1612, 4479
PdmI GAANNNNTTC 1 cut(s) 1598
PflFI GACNNNGTC 1 cut(s) 1708
PflMI CCANNNNNTGG 2 cut(s) 2669, 3492
PleI GAGTC 6 cut(s) 115, 1129, 2161, 2353, 2955, 3616
PpsI GAGTC 6 cut(s) 115, 1129, 2161, 2353, 2955, 3616
Ppu21I YACGTR 1 cut(s) 2933
Psp6I CCWGG 4 cut(s) 176, 329, 941, 4503
PspFI CCCAGC 1 cut(s) 3159
PspGI CCWGG 4 cut(s) 176, 329, 941, 4503
PspN4I GGNNCC 8 cut(s) 70, 102, 288, 1401, 1653, 1886, 2013, 3578
PspPI GGNCC 7 cut(s) 286, 2011, 2324, 3201, 3446, 3577, 3667
PspXI VCTCGAGB 1 cut(s) 277
PstI CTGCAG 3 cut(s) 3103, 3350, 3517
PstNI CAGNNNCTG 6 cut(s) 257, 1915, 2156, 2171, 2561, 3107
PsuI RGATCY 5 cut(s) 1325, 1651, 2065, 2167, 2530
PsyI GACNNNGTC 1 cut(s) 1708
PvuII CAGCTG 3 cut(s) 254, 3089, 3104
RsaI GTAC 5 cut(s) 446, 1623, 2190, 3455, 4171
RsaNI GTAC 5 cut(s) 445, 1622, 2189, 3454, 4170
RseI CAYNNNNRTG 4 cut(s) 1084, 1210, 2718, 3288
Sau3AI GATC 9 cut(s) 1325, 1651, 1814, 2065, 2167, 2530, 4018, 4145, 4417
Sau96I GGNCC 7 cut(s) 286, 2011, 2324, 3201, 3446, 3577, 3667
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 6 cut(s) 115, 1130, 2162, 2354, 2956, 3617
ScrFI CCNGG 5 cut(s) 178, 331, 394, 943, 4505
SduI GDGCHC 3 cut(s) 1578, 2385, 3188
SfcI CTRYAG 6 cut(s) 2172, 3099, 3346, 3441, 3513, 4161
SfiI GGCCNNNNNGGCC 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 277
SfuI TTCGAA 2 cut(s) 626, 4394
SinI GGWCC 6 cut(s) 286, 2011, 2324, 3201, 3446, 3577
SlaI CTCGAG 1 cut(s) 277
SmiMI CAYNNNNRTG 4 cut(s) 1084, 1210, 2718, 3288
SmlI CTYRAG 3 cut(s) 277, 2095, 3842
SmoI CTYRAG 3 cut(s) 277, 2095, 3842
SnaBI TACGTA 1 cut(s) 2933
SphI GCATGC 1 cut(s) 4382
SseBI AGGCCT 2 cut(s) 185, 2264
SspI AATATT 1 cut(s) 550
StuI AGGCCT 2 cut(s) 185, 2264
StyD4I CCNGG 5 cut(s) 176, 329, 392, 941, 4503
StyI CCWWGG 3 cut(s) 3248, 3329, 3449
TaiI ACGT 4 cut(s) 1197, 1941, 2935, 3355
TaqI TCGA 8 cut(s) 278, 530, 626, 872, 1486, 1851, 3025, 4394
TatI WGTACW 2 cut(s) 444, 4169
TauI GCSGC 3 cut(s) 69, 355, 668
TseFI GTSAC 7 cut(s) 17, 1702, 1710, 2270, 2485, 4156, 4327
Tsp45I GTSAC 7 cut(s) 17, 1702, 1710, 2270, 2485, 4156, 4327
TspGWI ACGGA 5 cut(s) 831, 869, 2212, 2989, 4024
Tth111I GACNNNGTC 1 cut(s) 1708
Van91I CCANNNNNTGG 2 cut(s) 2669, 3492
Vha464I CTTAAG 1 cut(s) 2095
VpaK11BI GGWCC 6 cut(s) 286, 2011, 2324, 3201, 3446, 3577
XagI CCTNNNNNAGG 2 cut(s) 304, 3115
XapI RAATTY 8 cut(s) 132, 538, 1557, 1675, 1799, 1847, 2788, 3698
XbaI TCTAGA 1 cut(s) 2827
XceI RCATGY 1 cut(s) 4382
XhoI CTCGAG 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 3329
XmnI GAANNNNTTC 1 cut(s) 1598
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 3 cut(s) 1204, 1879, 4462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.