RLG00000000614

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004120
Physical Location & Seq
Forward (+)
2626620 .. 2635461
8842 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000614

Sequence Viewer

Length: 4521 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAAGCCTTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTTCTAAAAAGTCGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTGGTTGAGGACGTCTCGGCCTCAGCCTCAGCTGCTGCTGCTCCTTCTTCTGCCTCGAGTGTGGTCCCCACCACCTTGCCGAGGGGGTTGGCTAGCTTCTTGTCCAGGCAATCTGATAGCCGGAAGCGGCACAAGAAGTCGCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTCGAGGGGGTATAGTGTGTGGGCGGAGACAGAGGAATACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCTGCTACTAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTCGTAATTCGAATGAGACTGTAAACGGTGGCAATGCTAATGAGGTTGCTGCCGAGTATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGATGAGATTGTGAATGGCGGGAATGCTAGTGAGGTTGTTGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTAGTTGAAAAGGTTAATGAGAAGGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACGGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTTCTGTTTCGGATTCTCCCAGGGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACTTCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTTGGTGCTGATGCAGGGTTGGAGAAAGTCCTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCGATTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGACGTAGATGCATCATGGTTATGCTCTTGGTGTAAGCACAACACTGCTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGAAGAATGGTAATAGTGGTGGATCTCCGGAGTTTGCCCACTTGTTTTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCAGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGCGTTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGATAAATTCAAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGACGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCATCACTTGCTGATGATAGCGTGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAAATTAAGACCGTCATTTGCATCATTGACTGAGTTTGGAGGTTCTGATGCTCCATTATCAGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGGGATTCTGCTGGACAAGATTAAATTAGATGAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCCATCAGTGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTCTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTCGGTGATTGCAAATGTAGATCCATCTTTTTCTGTTGAAAAACCAGTTCCTGAAAGCAAGAAATCAGGGGCAGAAGCTCCTAGTTCTTATGTCCACCTGCCTATGCAGAAGACATTATCACAGATGCAGAACGGGGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGATGAGAGGAATTTAGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTATCAGCATAGGTTGCAAAACAATATAACTGCGAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATCGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAACCAATATCTTTGCGAGCTTCGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTTGTTGATGAACACCCCCATCAGGAGAATGTGGTGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCAGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGCCAATGTTTGGGAGAAAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAATGTAAAAACTCTCGGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCAAAGGCTGATACACAAAAACACGGAATGGAGGAATTAAAGAACCTCTATACAATTAGGGCTGAGCTGGAGAGATTACGCCTTATTTGCGAAAGAATTATCAAACGGGAAAAAGTAAAGAGGGAATTACTCATTTGTTCACATGACCTTCTCGCTATGAAAAGAGATCATGTTGCCCGTTCCGTGCTTGTTAACAGTCCTTTCTTGCTACCGGATGCTAGTTCTGAATCAGCAACAACTTCTCTTAAAGCGCAGACAGATGATTACAGATCATGCAGTGAGACATTCCAAAGATCAGATGATGTGACTGTAGATAGCACAATTTCTGTTAGGCACAGGACTAGAGTTCCTATAACTATTGATAACGACCAAAGGACAGATGATGACAGCTCCACATCCCAAAATCAATTTACCCACAATCTTTCGGATAGGATGCAATTTTCTGAGAAACAGATTCCATTCAGACATTCTGCTGCGACTTGTAATCTTTCAGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCATGCCGAGATGTTTTCGAAAGAACTGGTGATGACATCAGATCAGGCATCGGTGAAAAATATGCTATTACCCAAAGGATATGCATATGTACCTGCTGATTGCATTCCAAATGAGAAGCAGGCCAACCAGGATACTTGTTCTGGTGAACGACCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1507

Amino Acids

165.61

Weight (kDa)

7.17

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 368 - 401 2.3e-09 PHD-finger
zf-HC5HC2H_2 PF13832 412 - 530 2.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 440 - 531 2.9e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1116 - 1149 9.8e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1165 - 1271 1e-18 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1186 - 1272 4.5e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2592
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 2 cut(s) 2592, 4453
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 2 cut(s) 2645, 3468
AccBSI CCGCTC 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 1306
AciI CCGC 9 cut(s) 53, 66, 104, 193, 334, 413, 708, 1411, 3507
AclWI GGATC 6 cut(s) 1309, 1622, 1635, 2049, 2138, 2501
AcoI YGGCCR 1 cut(s) 3703
AcsI RAATTY 8 cut(s) 132, 520, 1533, 1651, 1775, 1823, 2764, 3674
AcuI CTGAAG 3 cut(s) 900, 1301, 1743
AcyI GRCGYC 3 cut(s) 219, 356, 1941
AfaI GTAC 4 cut(s) 1599, 2166, 3431, 4443
AjiI CACGTC 1 cut(s) 1915
AjnI CCWGG 4 cut(s) 173, 311, 917, 4479
AjuI GAANNNNNNNTTGG 4 cut(s) 1519, 1551, 2632, 2664
AleI CACNNNNGTG 1 cut(s) 3264
Alw21I GWGCWC 2 cut(s) 2361, 3164
AlwI GGATC 6 cut(s) 1309, 1622, 1635, 2049, 2138, 2501
AlwNI CAGNNNCTG 6 cut(s) 242, 1891, 2132, 2147, 2537, 3083
Ama87I CYCGRG 2 cut(s) 262, 536
Aor13HI TCCGGA 1 cut(s) 1306
AoxI GGCC 8 cut(s) 10, 171, 180, 225, 2238, 3643, 3703, 4473
ApoI RAATTY 8 cut(s) 132, 520, 1533, 1651, 1775, 1823, 2764, 3674
ArsI GACNNNNNNTTYG 2 cut(s) 3666, 3698
Asp700I GAANNNNTTC 1 cut(s) 1574
AspA2I CCTAGG 1 cut(s) 3305
AspLEI GCGC 3 cut(s) 975, 1454, 4081
AspS9I GGNCC 7 cut(s) 271, 1987, 2300, 3177, 3422, 3553, 3643
AsuC2I CCSGG 1 cut(s) 376
AsuII TTCGAA 2 cut(s) 608, 4370
AsuNHI GCTAGC 1 cut(s) 299
AvaI CYCGRG 2 cut(s) 262, 536
AvaII GGWCC 6 cut(s) 271, 1987, 2300, 3177, 3422, 3553
AvrII CCTAGG 1 cut(s) 3305
BalI TGGCCA 1 cut(s) 3705
BamHI GGATCC 1 cut(s) 1627
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1554
BauI CACGAG 1 cut(s) 2670
BbsI GAAGAC 3 cut(s) 1173, 2603, 3453
Bbv12I GWGCWC 2 cut(s) 2361, 3164
BbvCI CCTCAGC 3 cut(s) 229, 235, 468
BceAI ACGGC 2 cut(s) 184, 3050
BciT130I CCWGG 4 cut(s) 175, 313, 919, 4481
BciVI GTATCC 2 cut(s) 4325, 4477
BcnI CCSGG 1 cut(s) 376
BfmI CTRYAG 6 cut(s) 2148, 3075, 3322, 3417, 3489, 4137
BfoI RGCGCY 2 cut(s) 976, 1455
BfuAI ACCTGC 2 cut(s) 2592, 4453
BfuI GTATCC 2 cut(s) 4325, 4477
BglI GCCNNNNNGGC 1 cut(s) 179
BlnI CCTAGG 1 cut(s) 3305
BlpI GCTNAGC 2 cut(s) 3158, 3891
Bme1390I CCNGG 5 cut(s) 175, 313, 376, 919, 4481
Bme18I GGWCC 6 cut(s) 271, 1987, 2300, 3177, 3422, 3553
BmeT110I CYCGRG 2 cut(s) 262, 536
BmgBI CACGTC 1 cut(s) 1915
BmgT120I GGNCC 7 cut(s) 271, 1987, 2300, 3177, 3422, 3553, 3643
BmiI GGNNCC 8 cut(s) 70, 102, 273, 1377, 1629, 1862, 1989, 3554
BmrFI CCNGG 5 cut(s) 175, 313, 376, 919, 4481
BmrI ACTGGG 1 cut(s) 2804
BmtI GCTAGC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 2804
BpiI GAAGAC 3 cut(s) 1173, 2603, 3453
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 2 cut(s) 2799, 3917
Bpu10I CCTNAGC 5 cut(s) 229, 235, 463, 468, 2781
Bpu1102I GCTNAGC 2 cut(s) 3158, 3891
Bpu14I TTCGAA 2 cut(s) 608, 4370
BpuEI CTTGAG 1 cut(s) 3839
BpuMI CCSGG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 2940
BsaAI YACGTR 1 cut(s) 2909
BsaBI GATNNNNATC 1 cut(s) 3396
BsaHI GRCGYC 3 cut(s) 219, 356, 1941
BsaJI CCNNGG 9 cut(s) 72, 287, 917, 918, 2171, 3203, 3224, 3305, 3425
BsaWI WCCGGW 4 cut(s) 5, 1306, 1402, 4039
BsaXI ACNNNNNCTCC 2 cut(s) 2455, 2485
Bse1I ACTGG 6 cut(s) 1274, 2531, 2799, 3366, 3523, 4383
Bse3DI GCAATG 3 cut(s) 443, 637, 2006
Bse8I GATNNNNATC 1 cut(s) 3396
BseAI TCCGGA 1 cut(s) 1306
BseBI CCWGG 4 cut(s) 175, 313, 919, 4481
BseCI ATCGAT 1 cut(s) 2940
BseDI CCNNGG 9 cut(s) 72, 287, 917, 918, 2171, 3203, 3224, 3305, 3425
BseJI GATNNNNATC 1 cut(s) 3396
BseMI GCAATG 3 cut(s) 443, 637, 2006
BseNI ACTGG 6 cut(s) 1274, 2531, 2799, 3366, 3523, 4383
BseRI GAGGAG 5 cut(s) 89, 599, 839, 1846, 2191
BsgI GTGCAG 2 cut(s) 3288, 3715
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 8 cut(s) 12, 173, 182, 227, 2240, 3645, 3705, 4475
BshNI GGYRCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 2940
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 2361, 3164
BsiHKCI CYCGRG 2 cut(s) 262, 536
BsiSI CCGG 8 cut(s) 6, 116, 128, 328, 376, 1307, 1403, 4040
BslFI GGGAC 5 cut(s) 257, 582, 1973, 3221, 3615
BsmBI CGTCTC 4 cut(s) 226, 1948, 3025, 3329
BsmFI GGGAC 5 cut(s) 257, 582, 1973, 3221, 3615
BsmI GAATGC 7 cut(s) 349, 370, 673, 718, 748, 1588, 4455
BsnI GGCC 8 cut(s) 12, 173, 182, 227, 2240, 3645, 3705, 4475
BsoBI CYCGRG 2 cut(s) 262, 536
Bsp119I TTCGAA 2 cut(s) 608, 4370
Bsp1286I GDGCHC 3 cut(s) 1554, 2361, 3164
Bsp13I TCCGGA 1 cut(s) 1306
Bsp1720I GCTNAGC 2 cut(s) 3158, 3891
Bsp19I CCATGG 1 cut(s) 3425
BspACI CCGC 9 cut(s) 53, 66, 104, 193, 334, 413, 708, 1411, 3507
BspANI GGCC 8 cut(s) 12, 173, 182, 227, 2240, 3645, 3705, 4475
BspDI ATCGAT 1 cut(s) 2940
BspEI TCCGGA 1 cut(s) 1306
BspHI TCATGA 1 cut(s) 1383
BspLI GGNNCC 8 cut(s) 70, 102, 273, 1377, 1629, 1862, 1989, 3554
BspMAI CTGCAG 3 cut(s) 3079, 3326, 3493
BspMI ACCTGC 2 cut(s) 2592, 4453
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 6 cut(s) 1309, 1622, 1635, 2049, 2138, 2501
BspT104I TTCGAA 2 cut(s) 608, 4370
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 3 cut(s) 443, 637, 2006
BsrI ACTGG 6 cut(s) 1274, 2531, 2799, 3366, 3523, 4383
BssECI CCNNGG 9 cut(s) 72, 287, 917, 918, 2171, 3203, 3224, 3305, 3425
BssNI GRCGYC 3 cut(s) 219, 356, 1941
BssSI CACGAG 1 cut(s) 2670
BssT1I CCWWGG 3 cut(s) 3224, 3305, 3425
Bst2BI CACGAG 1 cut(s) 2670
Bst2UI CCWGG 4 cut(s) 175, 313, 919, 4481
Bst6I CTCTTC 4 cut(s) 816, 876, 2313, 3094
BstACI GRCGYC 3 cut(s) 219, 356, 1941
BstAPI GCANNNNNTGC 5 cut(s) 1970, 2860, 3074, 3083, 3693
BstBAI YACGTR 1 cut(s) 2909
BstBI TTCGAA 2 cut(s) 608, 4370
BstC8I GCNNGC 7 cut(s) 301, 1480, 2238, 2996, 3782, 4356, 4473
BstDSI CCRYGG 3 cut(s) 2171, 3203, 3425
BstENI CCTNNNNNAGG 2 cut(s) 286, 3091
BstH2I RGCGCY 2 cut(s) 976, 1455
BstHHI GCGC 3 cut(s) 975, 1454, 4081
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 4 cut(s) 175, 313, 919, 4481
BstNSI RCATGY 1 cut(s) 4358
BstSCI CCNGG 5 cut(s) 173, 311, 374, 917, 4479
BstSFI CTRYAG 6 cut(s) 2148, 3075, 3322, 3417, 3489, 4137
BstSNI TACGTA 1 cut(s) 2909
BstV2I GAAGAC 3 cut(s) 1173, 2603, 3453
BstX2I RGATCY 5 cut(s) 1301, 1627, 2041, 2143, 2506
BstYI RGATCY 5 cut(s) 1301, 1627, 2041, 2143, 2506
Bsu15I ATCGAT 1 cut(s) 2940
BsuI GTATCC 2 cut(s) 4325, 4477
BsuRI GGCC 8 cut(s) 12, 173, 182, 227, 2240, 3645, 3705, 4475
BsuTUI ATCGAT 1 cut(s) 2940
BtgI CCRYGG 3 cut(s) 2171, 3203, 3425
BtrI CACGTC 1 cut(s) 1915
BtsI GCAGTG 2 cut(s) 1209, 4111
BveI ACCTGC 2 cut(s) 2592, 4453
Cac8I GCNNGC 7 cut(s) 301, 1480, 2238, 2996, 3782, 4356, 4473
CaiI CAGNNNCTG 6 cut(s) 242, 1891, 2132, 2147, 2537, 3083
CciI TCATGA 1 cut(s) 1383
CfoI GCGC 3 cut(s) 975, 1454, 4081
Cfr13I GGNCC 7 cut(s) 271, 1987, 2300, 3177, 3422, 3553, 3643
ClaI ATCGAT 1 cut(s) 2940
CseI GACGC 3 cut(s) 345, 1930, 3678
Csp6I GTAC 4 cut(s) 1598, 2165, 3430, 4442
CspCI CAANNNNNGTGG 2 cut(s) 1307, 1342
CviQI GTAC 4 cut(s) 1598, 2165, 3430, 4442
DraI TTTAAA 1 cut(s) 2205
EaeI YGGCCR 1 cut(s) 3703
Eam1104I CTCTTC 4 cut(s) 816, 876, 2313, 3094
EarI CTCTTC 4 cut(s) 816, 876, 2313, 3094
EciI GGCGGA 2 cut(s) 93, 428
Eco105I TACGTA 1 cut(s) 2909
Eco130I CCWWGG 3 cut(s) 3224, 3305, 3425
Eco147I AGGCCT 2 cut(s) 182, 2240
Eco24I GRGCYC 1 cut(s) 1554
Eco32I GATATC 2 cut(s) 3289, 3319
Eco47I GGWCC 6 cut(s) 271, 1987, 2300, 3177, 3422, 3553
Eco57I CTGAAG 3 cut(s) 900, 1301, 1743
Eco88I CYCGRG 2 cut(s) 262, 536
EcoNI CCTNNNNNAGG 2 cut(s) 286, 3091
EcoO109I RGGNCCY 1 cut(s) 3643
EcoRI GAATTC 1 cut(s) 1651
EcoRII CCWGG 4 cut(s) 173, 311, 917, 4479
EcoRV GATATC 2 cut(s) 3289, 3319
EcoT14I CCWWGG 3 cut(s) 3224, 3305, 3425
EcoT22I ATGCAT 3 cut(s) 1180, 1855, 4438
EcoT38I GRGCYC 1 cut(s) 1554
ErhI CCWWGG 3 cut(s) 3224, 3305, 3425
Esp3I CGTCTC 4 cut(s) 226, 1948, 3025, 3329
FaqI GGGAC 5 cut(s) 257, 582, 1973, 3221, 3615
FauI CCCGC 2 cut(s) 701, 1418
FauNDI CATATG 2 cut(s) 1433, 4438
FriOI GRGCYC 1 cut(s) 1554
GlaI GCGC 3 cut(s) 974, 1453, 4080
GsuI CTGGAG 2 cut(s) 2799, 3917
HaeII RGCGCY 2 cut(s) 976, 1455
HaeIII GGCC 8 cut(s) 12, 173, 182, 227, 2240, 3645, 3705, 4475
HapII CCGG 8 cut(s) 6, 116, 128, 328, 376, 1307, 1403, 4040
HgaI GACGC 3 cut(s) 345, 1930, 3678
HhaI GCGC 3 cut(s) 975, 1454, 4081
Hin1I GRCGYC 3 cut(s) 219, 356, 1941
Hin6I GCGC 3 cut(s) 973, 1452, 4079
HinP1I GCGC 3 cut(s) 973, 1452, 4079
HincII GTYRAC 4 cut(s) 1912, 2980, 3588, 4021
HindII GTYRAC 4 cut(s) 1912, 2980, 3588, 4021
HpaI GTTAAC 2 cut(s) 2980, 4021
HpaII CCGG 8 cut(s) 6, 116, 128, 328, 376, 1307, 1403, 4040
Hpy99I CGWCG 2 cut(s) 361, 3672
HpyCH4IV ACGT 5 cut(s) 219, 1170, 1914, 2908, 3328
HpySE526I ACGT 5 cut(s) 219, 1170, 1914, 2908, 3328
Hsp92I GRCGYC 3 cut(s) 219, 356, 1941
HspAI GCGC 3 cut(s) 973, 1452, 4079
Kpn2I TCCGGA 1 cut(s) 1306
KspAI GTTAAC 2 cut(s) 2980, 4021
LmnI GCTCC 6 cut(s) 253, 838, 1833, 2122, 2569, 4223
MaeII ACGT 5 cut(s) 219, 1170, 1914, 2908, 3328
MaeIII GTNAC 8 cut(s) 17, 1427, 1678, 1686, 2246, 2367, 2461, 4132
MbiI CCGCTC 1 cut(s) 193
MflI RGATCY 5 cut(s) 1301, 1627, 2041, 2143, 2506
MhlI GDGCHC 3 cut(s) 1554, 2361, 3164
MlsI TGGCCA 1 cut(s) 3705
MluNI TGGCCA 1 cut(s) 3705
MlyI GAGTC 6 cut(s) 115, 1106, 2138, 2330, 2932, 3593
MmeI TCCRAC 4 cut(s) 339, 996, 1372, 1911
Mox20I TGGCCA 1 cut(s) 3705
Mph1103I ATGCAT 3 cut(s) 1180, 1855, 4438
MroI TCCGGA 1 cut(s) 1306
MroXI GAANNNNTTC 1 cut(s) 1574
MscI TGGCCA 1 cut(s) 3705
MslI CAYNNNNRTG 4 cut(s) 1060, 1186, 2694, 3264
Msp20I TGGCCA 1 cut(s) 3705
MspA1I CMGCKG 3 cut(s) 239, 3065, 3080
MspI CCGG 8 cut(s) 6, 116, 128, 328, 376, 1307, 1403, 4040
MspR9I CCNGG 5 cut(s) 175, 313, 376, 919, 4481
Mva1269I GAATGC 7 cut(s) 349, 370, 673, 718, 748, 1588, 4455
MvaI CCWGG 4 cut(s) 175, 313, 919, 4481
NciI CCSGG 1 cut(s) 376
NcoI CCATGG 1 cut(s) 3425
NdeI CATATG 2 cut(s) 1433, 4438
NheI GCTAGC 1 cut(s) 299
NlaIV GGNNCC 8 cut(s) 70, 102, 273, 1377, 1629, 1862, 1989, 3554
NmeAIII GCCGAG 4 cut(s) 203, 312, 676, 4384
NmuCI GTSAC 6 cut(s) 17, 1678, 1686, 2246, 2461, 4132
NsiI ATGCAT 3 cut(s) 1180, 1855, 4438
NspI RCATGY 1 cut(s) 4358
NspV TTCGAA 2 cut(s) 608, 4370
OliI CACNNNNGTG 1 cut(s) 3264
PaeI GCATGC 1 cut(s) 4358
PaeR7I CTCGAG 1 cut(s) 262
PagI TCATGA 1 cut(s) 1383
PaqCI CACCTGC 1 cut(s) 2592
PasI CCCWGGG 1 cut(s) 918
PceI AGGCCT 2 cut(s) 182, 2240
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PctI GAATGC 7 cut(s) 349, 370, 673, 718, 748, 1588, 4455
PdmI GAANNNNTTC 1 cut(s) 1574
PflFI GACNNNGTC 1 cut(s) 1684
PflMI CCANNNNNTGG 2 cut(s) 2645, 3468
PleI GAGTC 6 cut(s) 115, 1105, 2137, 2329, 2931, 3592
PpsI GAGTC 6 cut(s) 115, 1105, 2137, 2329, 2931, 3592
Ppu21I YACGTR 1 cut(s) 2909
Psp6I CCWGG 4 cut(s) 173, 311, 917, 4479
PspGI CCWGG 4 cut(s) 173, 311, 917, 4479
PspN4I GGNNCC 8 cut(s) 70, 102, 273, 1377, 1629, 1862, 1989, 3554
PspPI GGNCC 7 cut(s) 271, 1987, 2300, 3177, 3422, 3553, 3643
PspXI VCTCGAGB 1 cut(s) 262
PstI CTGCAG 3 cut(s) 3079, 3326, 3493
PstNI CAGNNNCTG 6 cut(s) 242, 1891, 2132, 2147, 2537, 3083
PsuI RGATCY 5 cut(s) 1301, 1627, 2041, 2143, 2506
PsyI GACNNNGTC 1 cut(s) 1684
PvuII CAGCTG 3 cut(s) 239, 3065, 3080
RsaI GTAC 4 cut(s) 1599, 2166, 3431, 4443
RsaNI GTAC 4 cut(s) 1598, 2165, 3430, 4442
RseI CAYNNNNRTG 4 cut(s) 1060, 1186, 2694, 3264
Sau96I GGNCC 7 cut(s) 271, 1987, 2300, 3177, 3422, 3553, 3643
SchI GAGTC 6 cut(s) 115, 1106, 2138, 2330, 2932, 3593
ScrFI CCNGG 5 cut(s) 175, 313, 376, 919, 4481
SduI GDGCHC 3 cut(s) 1554, 2361, 3164
SfcI CTRYAG 6 cut(s) 2148, 3075, 3322, 3417, 3489, 4137
SfiI GGCCNNNNNGGCC 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 262
SfuI TTCGAA 2 cut(s) 608, 4370
SinI GGWCC 6 cut(s) 271, 1987, 2300, 3177, 3422, 3553
SlaI CTCGAG 1 cut(s) 262
SmiMI CAYNNNNRTG 4 cut(s) 1060, 1186, 2694, 3264
SmlI CTYRAG 2 cut(s) 262, 3818
SmoI CTYRAG 2 cut(s) 262, 3818
SnaBI TACGTA 1 cut(s) 2909
SphI GCATGC 1 cut(s) 4358
SseBI AGGCCT 2 cut(s) 182, 2240
SsiI CCGC 9 cut(s) 53, 66, 104, 193, 334, 413, 708, 1411, 3507
SspI AATATT 1 cut(s) 532
StuI AGGCCT 2 cut(s) 182, 2240
StyD4I CCNGG 5 cut(s) 173, 311, 374, 917, 4479
StyI CCWWGG 3 cut(s) 3224, 3305, 3425
TaiI ACGT 5 cut(s) 222, 1173, 1917, 2911, 3331
TaqI TCGA 9 cut(s) 263, 392, 512, 608, 854, 1462, 2940, 3001, 4370
TauI GCSGC 2 cut(s) 69, 337
TseFI GTSAC 6 cut(s) 17, 1678, 1686, 2246, 2461, 4132
Tsp45I GTSAC 6 cut(s) 17, 1678, 1686, 2246, 2461, 4132
TspGWI ACGGA 7 cut(s) 72, 813, 851, 2188, 2965, 3867, 4000
Tth111I GACNNNGTC 1 cut(s) 1684
Van91I CCANNNNNTGG 2 cut(s) 2645, 3468
VpaK11BI GGWCC 6 cut(s) 271, 1987, 2300, 3177, 3422, 3553
XagI CCTNNNNNAGG 2 cut(s) 286, 3091
XapI RAATTY 8 cut(s) 132, 520, 1533, 1651, 1775, 1823, 2764, 3674
XbaI TCTAGA 1 cut(s) 2803
XceI RCATGY 1 cut(s) 4358
XhoI CTCGAG 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 3305
XmnI GAANNNNTTC 1 cut(s) 1574
ZraI GACGTC 1 cut(s) 220
Zsp2I ATGCAT 3 cut(s) 1180, 1855, 4438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.