MD08G1173200.v1.1

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0004120
Physical Location & Seq
Forward (+)
20894352 .. 20905075
10724 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1173200.v1.1.491

Sequence Viewer

Length: 4542 bp
ATGACCGGAGGCCGATGTCACGAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAGGCCTTGCCCAATTCCTAGGGTTCGGCCCAAAATTCCGGCTACCCAACTGGAAATTCTAGAGAAGTCGTCGAGCTCTTTGAGAATTGATTTTTTCTCGCAGGCTAGGAAGGCTTTGTGTGAGCGCTCTCCTTTTGATGTTCCTGAGGACGGCTCATCTTCGAGTGTGCCCACCACCTTGCCTAGGGGTTTGGCTAGCTTCTTGTCGAGGCAGTCGGATAGTCGAAAGCGGCATAAGAAGTCGCATGCCGGCGCTGAGAAGAAGAGTTTTCGGCAGAGAGAGAGGTCCCGGGGTAATAACATTTGGGTGGAGACTGAGGACTACTTTAGACCATTGACACTGCCTGATATTGATGCGTTGTCTCAGGTATCCGAGCTTAGTAATTTAGCTTCTCACAAGTGTTTTTCGATTCCGGTTGTGGGAAATGTTCCGAGGCGGAATGCGAATGAGAACGTTAATGCAAACGGAGTTGTTGTCAGTGAGGAGGATGCAAATGGCGGTAAGTCAAATTGTGTTGTTGTCAAGGATGAAGGTATAAATGGGGGGAATGCACATGATGCCATTGTCATGGATGAGAATGCAAACGATCAGAATGCTAATGATGGTGTCGTCAAGGCTGAGTGTGCATATGAATGGAATGCCAATTCGGTTGTAGTTGAAAAAGTGAATGAGAATGGTGGAAATGAAAATAGGGTTGTCGAAGACGAGGTTAAGACAGAGAAGGATGAACATTCCATGGAAATAGATAGTGTGGGAGCTTCTGGGTTGCCCCCTAGTGGTCTTGAGTGGCTTTTAGGGTACAGGAATAAGATTTCTTTAACATCAGAGCGCCCGTCAAAGAAGCGGAAGGTTCTAGGTTCTGATGCAGGATTGGAGAAAGTGTTAATAGCGGCTCCATGTGATGGGAATTCATCTTTATGCCATTTCTGCTGCATGGGTGATGCAGGGAACGAGTCAAACCCATTGATTGTCTGTAGTTCTTGTAAGGTTGGAGTTCATCAGAAGTGCTATGGAGTACTAGAGAATGTAGATGCTTCATGGTTATGCTCTTGGTGTAAGAAGAAGACTGATACTAGTGATTCAGTAAAGCCATGTGTGCTTTGCTCAAAGCAGGGTGGCGCTTTAAAGCCAATTATTAAGAGCGTTGAAAATGGTGGATCTATGGATTTTGTTCACTTGTTTTGCTGTCAATGGATGCCTGAGGTTTATATAGAGGACTTAGCAAAGATGGAGCCTATCATAAACGTTGGAGGAATAATTGAAACCCGCAGAAAGTTAATATGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGGTGCAGTCATGGAACTTGCAGAACTTCGTTTCATCCATTATGTGCGAGGGAGGCAAGACAGAGAATGGAAATTTGGGGAAAATATGGGTGCGATAATGTTGAGCTGAGGGCCTTTTGTTCAAAGCACTCAGAAGTACCAGGTAACAACAACAGTCAATTAGTATCTCCCTCTGTCTCTGCTGACAAGAACTCAAATGTCTCCAACCATCTTCCTATGGCATTGTCAGAAAACAAATTACCCAAGTTAAGGATAGGCCCTAGAAATGGTGATAAAACTGCAGTACCTATTGAGGCTCTAGATATTACTTCTGACAAATCGGGTGATAGTGAATCACAGGAGATAGTGTTTCCTATTCCAAGATTAAATCCTAGGCTGACATCGGAGTGTGGTAATGCACAGCCGATGATTAATGCAGGGGCATTTGAGAGAAGCAAAGAGGATGTTAATGCTTCTAATTCCCTTAAATTTTCTCTGATTTTAAAGAAGCTGATTGATTGTGGAAAAGTTAATGTGAAGGATGTGGCATTGGACGTTGGTCTCTCACCTGATTCTTTATCTGCATCACTTGCTGATGGTACTATGGTGCCTGATGTGCAAGGAAGAATAGTTAAATGGCTAAAAGACCATTCTAACTTGGATTTAAAGCAGAAAAATGGAAAAATGAAATTAAGATCAGCAATGTCATCCATGGCTGAGTTTGGGGATTCTGATGGCTCTGAAGCTGCTTCATTATCGGAGTCTGATATGGCAGATGTAGCTGTTAAGTCAGTACCCCCACGGAGAAGAACCAAAAGCAGTATTAGGTTTCTGAAGGATGACAAAGTAATAAGCTCATCCAAGGGGATCTTTAATGACAATGGCACATTGGACAAGATTAAGGTTGATCAACCTGTCACTGATGAACAAGAAAATTTAAGTAGAGTGTCTGTCCCTGATCCTGTTGAGAAGAATCCAACAGAGGCCGATGTGTTTCAACATTCTTTGATGACACATTCACCTAGATCAGAAGGTCTTTTAGCTAAACCCTTGAATTGCAGCCTTTTGCAAATGGGTCAAGAGCAGTTGGGTACTATTCCTTTGCAGGGTACCTCAGCAATTGCAAATGAAGGTCAATCGTTTTCAGTTGCAAAACCGGTTATTCCTGAATTCAATAAATCTGAGGCTGAAGTTCCTGGTTTTTATGTCCATCCATATATTGAAAATAAGTTGTTGCAGATGCAGACTGGGGTGTCCTTAGAAAATTCAATATATGGTTCAAGTGAGGGAGAAATTTCACGTCTGGAGGCATCCTCCCATGCAAGTGTTTGCTGTAATCACCAAAATAAGCATCCAAAATGCTGTGACATCATTTTTAAATCCGATGAGATGAAACTAGAACAGTTGGTTAAGGCTCGAAAAATGGGAGTTCTAGAAATCTGTCCAGGTGATGAAATGGAAGGAGAGCTTATTTATTACCAGCATAGGTTGCTCAACAATGCGATTGCAAGAAAGCATTTTACTGATAATTTGGTATCTAATGTTGCTAAGAGTCTTCCATTGGAGATTGATGCAGCACGGAGGCAAAAATGGGATGCTGTACTCGTTAACCAGTATCTTTGGGAGCTTAGGGAGGCAAAGAAGCAGGGTAGGAAGGAGAGACGGCATAAAGAAGCACAGGCTGTGCTAGCAGCTGCAACTGCTGCTGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGAGGTTCTTGACGAATCTTCCCATCAGGAGAATGTGACGAAGTTGAATACTTCTAGTGGGAGGTCCAGCTTTTCCTCACAGATGATGCCGCGACCTAAAGAGACATTTCCGAGGGTGGCTGTTCCCCGGATTTCTGTGGAAAAACACTCTGGTTTTGTTCATTCAGTCACTGATTCTTCCAAAGAACATCCTAGATCTTGTGACATCTGCAGACGTTATGAAACGTTGTTAAACCCGATCTTAGTCTGTTGTAGTTGCAAGGTTGCCATTCACTTGGATTGCTATCGTAGGACTAGAGAATCTACAGGTCCATGGTATTGTGAATTGTGTGAAGAAATGTCATCAACTTGTATTGCTGGTGCTCCTGTCAATTTTTGGGAGAAAGATCATTTTGTTGCAGAATGTGGTTTATGTGGTGGCAAAACAGGTGCATTTAGGAAGTCTTCTGATGGTAAATGGGTACATGCCTTTTGTGCCGAGTGGATCTTTGAGTCAACATTCAGAAGGGGGCAAGTATCTCTCATTGAGGGAATGGAGACGATTTCTAAGGGGCTTGATTTTTGTTATATCTGCCGACGCAAATGTGGTGTCTGCATAAAATGTAACTTTGGCAATTGTCAGTCAACATTTCATCCTTCCTGTGCTAGAAGTTCTGGTTTTTACATGAATGTGAAAACTTTCGGTGGAAAGATCCAACACAAGGCATACTGTGAAAAGCATAGTGTTGAGCAGAGGACGAAGGCTGAAACACAAATACATGGAACTGAGGAGTTAGAGAACCTCAGGAAAATCAGAGTTGAACTGGAGAGGGTACGACTACTTTGTGATAGAATCATCAAACGAGAAAAAGTAAAGCGGGAACTGCTCATTTGTTCACATGACCTTCTTGCTGTCAGGAGAGATCATGTTGCTCGGACAGTGCTTGTTAATAGTCCTTTACTGCCACCTGATGTTAGTTCTGAATCAGCTACAACATCTCTTAACGGACATACAGATGATTACAAATCATGCAGTGATGCAATTCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCTGTGAAGCGGCGGAGAGTTCCTATAACTATTGACAATGACCCAAAAACAGATGATGACAGCTCCACATCCCAAAACCATTCTACCAAAAAGCTCTTGGAGAGGCCACAAGTTTCTGATAAACATATTCCTTGTGGAGCTTCTAGTGCTGCAACTTGTAAGCTTTCGGAAGATGGAGGATGGAGGTCAAAATCTAGGAAGCATGCCGAGACTTTTGAGAAAGAACTGGTAATGACATCGGATCAAGCATCGATGAAAAATATGAAATTACCCAAAGGATATGCATATGTTCCTGCTGATTGCATTCCAAATGAAAAGCAGATCAACCAGGATGCTTGTTCTGGTGAACAACCGCAAGGAGACGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1514

Amino Acids

167.0

Weight (kDa)

8.03

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 345 - 378 4.3e-10 PHD-finger
zf-HC5HC2H_2 PF13832 389 - 507 9.2e-21 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 417 - 508 1.4e-18 PHD-like zinc-binding domain
PHD_2 PF13831 1116 - 1149 1.3e-06 PHD-finger
zf-HC5HC2H_2 PF13832 1172 - 1278 2.2e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1193 - 1279 4.6e-13 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2623
Acc65I GGTACC 1 cut(s) 2480
AccB1I GGYRCC 3 cut(s) 65, 1978, 2480
AccB7I CCANNNNNTGG 1 cut(s) 977
AccII CGCG 1 cut(s) 3205
AclI AACGTT 3 cut(s) 528, 1320, 3338
AclWI GGATC 6 cut(s) 1240, 2246, 2324, 3605, 3799, 4422
AcsI RAATTY 9 cut(s) 108, 129, 982, 1464, 1859, 2305, 2540, 2635, 2664
AcuI CTGAAG 3 cut(s) 2133, 2225, 2580
AfeI AGCGCT 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 2527
AhlI ACTAGT 1 cut(s) 1148
AjiI CACGTC 1 cut(s) 2672
AjnI CCWGG 4 cut(s) 1531, 2566, 2815, 4500
AjuI GAANNNNNNNTTGG 4 cut(s) 114, 146, 1450, 1482
Alw21I GWGCWC 2 cut(s) 152, 3478
AlwI GGATC 6 cut(s) 1240, 2246, 2324, 3605, 3799, 4422
AlwNI CAGNNNCTG 1 cut(s) 3284
Ama87I CYCGRG 1 cut(s) 363
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 7 cut(s) 10, 77, 101, 1503, 1648, 2355, 4277
ApoI RAATTY 9 cut(s) 108, 129, 982, 1464, 1859, 2305, 2540, 2635, 2664
ArsI GACNNNNNNTTYG 2 cut(s) 3687, 3719
AseI ATTAAT 1 cut(s) 1803
AsiGI ACCGGT 1 cut(s) 2527
Asp700I GAANNNNTTC 1 cut(s) 3791
Asp718I GGTACC 1 cut(s) 2480
AspA2I CCTAGG 3 cut(s) 92, 257, 1763
AspLEI GCGC 5 cut(s) 201, 329, 906, 1196, 1385
AspS9I GGNCC 6 cut(s) 102, 360, 1503, 1649, 3177, 3422
AsuC2I CCSGG 3 cut(s) 364, 365, 3241
AsuHPI GGTGA 9 cut(s) 1025, 1384, 1673, 1727, 1929, 2382, 2702, 2831, 4529
AsuNHI GCTAGC 2 cut(s) 269, 3058
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 3 cut(s) 360, 3177, 3422
AvrII CCTAGG 3 cut(s) 92, 257, 1763
AxyI CCTNAGG 3 cut(s) 219, 1275, 3896
BaeGI GKGCMC 1 cut(s) 246
BaeI ACNNNNGTAYC 4 cut(s) 1659, 1692, 1962, 1995
BanI GGYRCC 3 cut(s) 65, 1978, 2480
BanII GRGCYC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 4 cut(s) 783, 1145, 2918, 3549
Bbv12I GWGCWC 2 cut(s) 152, 3478
BbvCI CCTCAGC 2 cut(s) 1499, 2485
BceAI ACGGC 2 cut(s) 241, 3050
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 4 cut(s) 1533, 2568, 2817, 4502
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 2278
BcnI CCSGG 3 cut(s) 364, 365, 3241
BcuI ACTAGT 1 cut(s) 1148
BfmI CTRYAG 5 cut(s) 1048, 1671, 3322, 3417, 4158
BfoI RGCGCY 5 cut(s) 202, 330, 907, 1197, 1386
BfuI GTATCC 1 cut(s) 454
BglII AGATCT 1 cut(s) 3308
BlnI CCTAGG 3 cut(s) 92, 257, 1763
BmcAI AGTACT 1 cut(s) 1092
Bme1390I CCNGG 7 cut(s) 364, 365, 1533, 2568, 2817, 3241, 4502
Bme18I GGWCC 3 cut(s) 360, 3177, 3422
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 1 cut(s) 2672
BmgT120I GGNCC 6 cut(s) 102, 360, 1503, 1649, 3177, 3422
BmiI GGNNCC 6 cut(s) 67, 362, 969, 1308, 1980, 2482
BmrFI CCNGG 7 cut(s) 364, 365, 1533, 2568, 2817, 3241, 4502
BmrI ACTGGG 1 cut(s) 2628
BmtI GCTAGC 2 cut(s) 273, 3062
BmuI ACTGGG 1 cut(s) 2628
BoxI GACNNNNGTC 1 cut(s) 1929
BpiI GAAGAC 4 cut(s) 783, 1145, 2918, 3549
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 2669, 2701
BpmI CTGGAG 2 cut(s) 2696, 3938
Bpu10I CCTNAGC 3 cut(s) 1499, 2485, 2999
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 3 cut(s) 364, 365, 3241
Bsa29I ATCGAT 1 cut(s) 4424
BsaBI GATNNNNATC 1 cut(s) 3396
BsaI GGTCTC 1 cut(s) 1937
BsaWI WCCGGW 3 cut(s) 5, 487, 2527
BsaXI ACNNNNNCTCC 6 cut(s) 534, 564, 941, 971, 1724, 1754
Bse118I RCCGGY 2 cut(s) 323, 2527
Bse1I ACTGG 5 cut(s) 129, 2623, 2983, 3921, 4404
Bse21I CCTNAGG 3 cut(s) 219, 1275, 3896
Bse3DI GCAATG 1 cut(s) 2079
Bse8I GATNNNNATC 1 cut(s) 3396
BseBI CCWGG 4 cut(s) 1533, 2568, 2817, 4502
BseCI ATCGAT 1 cut(s) 4424
BseJI GATNNNNATC 1 cut(s) 3396
BseMI GCAATG 1 cut(s) 2079
BseNI ACTGG 5 cut(s) 129, 2623, 2983, 3921, 4404
BseRI GAGGAG 3 cut(s) 86, 572, 3896
BseSI GKGCMC 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 1417
Bsh1236I CGCG 1 cut(s) 3205
BshFI GGCC 7 cut(s) 12, 79, 103, 1505, 1650, 2357, 4279
BshNI GGYRCC 3 cut(s) 65, 1978, 2480
BshTI ACCGGT 1 cut(s) 2527
BshVI ATCGAT 1 cut(s) 4424
BsiHKAI GWGCWC 2 cut(s) 152, 3478
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 7 cut(s) 6, 113, 324, 364, 488, 2528, 3241
BslFI GGGAC 2 cut(s) 346, 2309
BsmBI CGTCTC 3 cut(s) 3025, 3644, 4527
BsmFI GGGAC 2 cut(s) 346, 2309
BsmI GAATGC 6 cut(s) 520, 628, 658, 673, 718, 4476
BsnI GGCC 7 cut(s) 12, 79, 103, 1505, 1650, 2357, 4279
Bso31I GGTCTC 1 cut(s) 1937
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 152, 246, 3478
Bsp19I CCATGG 3 cut(s) 810, 2082, 3425
BspANI GGCC 7 cut(s) 12, 79, 103, 1505, 1650, 2357, 4279
BspDI ATCGAT 1 cut(s) 4424
BspFNI CGCG 1 cut(s) 3205
BspLI GGNNCC 6 cut(s) 67, 362, 969, 1308, 1980, 2482
BspMAI CTGCAG 2 cut(s) 1675, 3326
BspOI GCTAGC 2 cut(s) 273, 3062
BspPI GGATC 6 cut(s) 1240, 2246, 2324, 3605, 3799, 4422
BspT107I GGYRCC 3 cut(s) 65, 1978, 2480
BspTNI GGTCTC 1 cut(s) 1937
BsrDI GCAATG 1 cut(s) 2079
BsrFI RCCGGY 2 cut(s) 323, 2527
BsrI ACTGG 5 cut(s) 129, 2623, 2983, 3921, 4404
BssAI RCCGGY 2 cut(s) 323, 2527
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 7 cut(s) 92, 257, 810, 1763, 2082, 2232, 3425
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 4 cut(s) 1533, 2568, 2817, 4502
Bst4CI ACNGT 5 cut(s) 1547, 2775, 3824, 4033, 4159
Bst6I CTCTTC 2 cut(s) 332, 3094
BstAPI GCANNNNNTGC 4 cut(s) 632, 1961, 2860, 3074
BstC8I GCNNGC 6 cut(s) 177, 271, 321, 325, 3060, 4377
BstDSI CCRYGG 4 cut(s) 810, 2082, 2171, 3425
BstENI CCTNNNNNAGG 2 cut(s) 256, 3091
BstFNI CGCG 1 cut(s) 3205
BstH2I RGCGCY 5 cut(s) 202, 330, 907, 1197, 1386
BstHHI GCGC 5 cut(s) 201, 329, 906, 1196, 1385
BstNI CCWGG 4 cut(s) 1533, 2568, 2817, 4502
BstNSI RCATGY 3 cut(s) 323, 3581, 4379
BstPAI GACNNNNGTC 1 cut(s) 1929
BstSCI CCNGG 7 cut(s) 362, 363, 1531, 2566, 2815, 3239, 4500
BstSFI CTRYAG 5 cut(s) 1048, 1671, 3322, 3417, 4158
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 3205
BstV2I GAAGAC 4 cut(s) 783, 1145, 2918, 3549
BstX2I RGATCY 5 cut(s) 1232, 2238, 3308, 3597, 3804
BstXI CCANNNNNNTGG 2 cut(s) 643, 3388
BstYI RGATCY 5 cut(s) 1232, 2238, 3308, 3597, 3804
Bsu15I ATCGAT 1 cut(s) 4424
Bsu36I CCTNAGG 3 cut(s) 219, 1275, 3896
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 7 cut(s) 12, 79, 103, 1505, 1650, 2357, 4279
BsuTUI ATCGAT 1 cut(s) 4424
BtgI CCRYGG 4 cut(s) 810, 2082, 2171, 3425
BtrI CACGTC 1 cut(s) 2672
BtsI GCAGTG 2 cut(s) 413, 4132
BtsIMutI CAGTG 6 cut(s) 413, 559, 2289, 3282, 4038, 4132
Cac8I GCNNGC 6 cut(s) 177, 271, 321, 325, 3060, 4377
CaiI CAGNNNCTG 1 cut(s) 3284
CfoI GCGC 5 cut(s) 201, 329, 906, 1196, 1385
Cfr10I RCCGGY 2 cut(s) 323, 2527
Cfr13I GGNCC 6 cut(s) 102, 360, 1503, 1649, 3177, 3422
Cfr9I CCCGGG 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 4424
CseI GACGC 1 cut(s) 3699
CsiI ACCWGGT 1 cut(s) 1531
CspAI ACCGGT 1 cut(s) 2527
DraI TTTAAA 4 cut(s) 1200, 1875, 2037, 2749
DrdI GACNNNNNNGTC 1 cut(s) 2623
DseDI GACNNNNNNGTC 1 cut(s) 2623
Eam1104I CTCTTC 2 cut(s) 332, 3094
EarI CTCTTC 2 cut(s) 332, 3094
EciI GGCGGA 2 cut(s) 526, 4201
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 7 cut(s) 92, 257, 810, 1763, 2082, 2232, 3425
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 1937
Eco47I GGWCC 3 cut(s) 360, 3177, 3422
Eco47III AGCGCT 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 2133, 2225, 2580
Eco81I CCTNAGG 3 cut(s) 219, 1275, 3896
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 2 cut(s) 256, 3091
EcoO109I RGGNCCY 3 cut(s) 360, 1503, 1649
EcoRI GAATTC 2 cut(s) 982, 2540
EcoRII CCWGG 4 cut(s) 1531, 2566, 2815, 4500
EcoT14I CCWWGG 7 cut(s) 92, 257, 810, 1763, 2082, 2232, 3425
EcoT22I ATGCAT 1 cut(s) 4459
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 7 cut(s) 92, 257, 810, 1763, 2082, 2232, 3425
Esp3I CGTCTC 3 cut(s) 3025, 3644, 4527
FalI AAGNNNNNCTT 6 cut(s) 2225, 2257, 2823, 2855, 3105, 3137
FaqI GGGAC 2 cut(s) 346, 2309
FauI CCCGC 2 cut(s) 1349, 3963
FauNDI CATATG 3 cut(s) 703, 1364, 4459
FbaI TGATCA 1 cut(s) 2278
FriOI GRGCYC 1 cut(s) 152
GlaI GCGC 5 cut(s) 200, 328, 905, 1195, 1384
GsuI CTGGAG 2 cut(s) 2696, 3938
HaeII RGCGCY 5 cut(s) 202, 330, 907, 1197, 1386
HaeIII GGCC 7 cut(s) 12, 79, 103, 1505, 1650, 2357, 4279
HapII CCGG 7 cut(s) 6, 113, 324, 364, 488, 2528, 3241
HgaI GACGC 1 cut(s) 3699
HhaI GCGC 5 cut(s) 201, 329, 906, 1196, 1385
Hin6I GCGC 5 cut(s) 199, 327, 904, 1194, 1383
HinP1I GCGC 5 cut(s) 199, 327, 904, 1194, 1383
HincII GTYRAC 3 cut(s) 2980, 3609, 3738
HindII GTYRAC 3 cut(s) 2980, 3609, 3738
HindIII AAGCTT 1 cut(s) 4334
HpaI GTTAAC 1 cut(s) 2980
HpaII CCGG 7 cut(s) 6, 113, 324, 364, 488, 2528, 3241
HphI GGTGA 9 cut(s) 1025, 1384, 1673, 1727, 1929, 2382, 2702, 2831, 4529
Hpy166II GTNNAC 6 cut(s) 1249, 2980, 3609, 3738, 3989, 4520
Hpy8I GTNNAC 6 cut(s) 1249, 2980, 3609, 3738, 3989, 4520
Hpy99I CGWCG 2 cut(s) 148, 3693
HpyCH4III ACNGT 5 cut(s) 1547, 2775, 3824, 4033, 4159
HpyCH4IV ACGT 6 cut(s) 528, 1320, 1926, 2671, 3328, 3338
HpySE526I ACGT 6 cut(s) 528, 1320, 1926, 2671, 3328, 3338
HspAI GCGC 5 cut(s) 199, 327, 904, 1194, 1383
KpnI GGTACC 1 cut(s) 2484
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 2278
KspAI GTTAAC 1 cut(s) 2980
LmnI GCTCC 7 cut(s) 830, 973, 1306, 2995, 3481, 4241, 4310
MabI ACCWGGT 1 cut(s) 1531
MaeII ACGT 6 cut(s) 528, 1320, 1926, 2671, 3328, 3338
MfeI CAATTG 2 cut(s) 2490, 3727
MflI RGATCY 5 cut(s) 1232, 2238, 3308, 3597, 3804
MhlI GDGCHC 3 cut(s) 152, 246, 3478
MlyI GAGTC 4 cut(s) 1037, 2141, 2932, 3614
MmeI TCCRAC 6 cut(s) 270, 1045, 1303, 1620, 2372, 3832
Mph1103I ATGCAT 1 cut(s) 4459
MroNI GCCGGC 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 3791
MslI CAYNNNNRTG 9 cut(s) 380, 641, 706, 991, 1117, 1777, 2694, 3782, 4107
MspA1I CMGCKG 1 cut(s) 3065
MspI CCGG 7 cut(s) 6, 113, 324, 364, 488, 2528, 3241
MspR9I CCNGG 7 cut(s) 364, 365, 1533, 2568, 2817, 3241, 4502
MunI CAATTG 2 cut(s) 2490, 3727
Mva1269I GAATGC 6 cut(s) 520, 628, 658, 673, 718, 4476
MvaI CCWGG 4 cut(s) 1533, 2568, 2817, 4502
MvnI CGCG 1 cut(s) 3205
NaeI GCCGGC 1 cut(s) 325
NciI CCSGG 3 cut(s) 364, 365, 3241
NcoI CCATGG 3 cut(s) 810, 2082, 3425
NdeI CATATG 3 cut(s) 703, 1364, 4459
NgoMIV GCCGGC 1 cut(s) 323
NheI GCTAGC 2 cut(s) 269, 3058
NlaIV GGNNCC 6 cut(s) 67, 362, 969, 1308, 1980, 2482
NmeAIII GCCGAG 2 cut(s) 3616, 4405
NmuCI GTSAC 7 cut(s) 17, 2287, 2735, 3148, 3280, 3314, 4153
NsiI ATGCAT 1 cut(s) 4459
NspI RCATGY 3 cut(s) 323, 3581, 4379
PaeI GCATGC 2 cut(s) 323, 4379
PceI AGGCCT 1 cut(s) 79
PctI GAATGC 6 cut(s) 520, 628, 658, 673, 718, 4476
PdiI GCCGGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 3791
PflMI CCANNNNNTGG 1 cut(s) 977
PinAI ACCGGT 1 cut(s) 2527
PleI GAGTC 4 cut(s) 1036, 2140, 2931, 3613
PpsI GAGTC 4 cut(s) 1036, 2140, 2931, 3613
PpuMI RGGWCCY 1 cut(s) 360
PshAI GACNNNNGTC 1 cut(s) 1929
PshBI ATTAAT 1 cut(s) 1803
Psp124BI GAGCTC 1 cut(s) 152
Psp1406I AACGTT 3 cut(s) 528, 1320, 3338
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 4 cut(s) 1531, 2566, 2815, 4500
PspGI CCWGG 4 cut(s) 1531, 2566, 2815, 4500
PspN4I GGNNCC 6 cut(s) 67, 362, 969, 1308, 1980, 2482
PspPI GGNCC 6 cut(s) 102, 360, 1503, 1649, 3177, 3422
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 2 cut(s) 1675, 3326
PstNI CAGNNNCTG 1 cut(s) 3284
PsuI RGATCY 5 cut(s) 1232, 2238, 3308, 3597, 3804
PvuII CAGCTG 1 cut(s) 3065
RseI CAYNNNNRTG 9 cut(s) 380, 641, 706, 991, 1117, 1777, 2694, 3782, 4107
SacI GAGCTC 1 cut(s) 152
Sau96I GGNCC 6 cut(s) 102, 360, 1503, 1649, 3177, 3422
ScaI AGTACT 1 cut(s) 1092
SchI GAGTC 4 cut(s) 1037, 2141, 2932, 3614
ScrFI CCNGG 7 cut(s) 364, 365, 1533, 2568, 2817, 3241, 4502
SduI GDGCHC 3 cut(s) 152, 246, 3478
SexAI ACCWGGT 1 cut(s) 1531
SfcI CTRYAG 5 cut(s) 1048, 1671, 3322, 3417, 4158
SinI GGWCC 3 cut(s) 360, 3177, 3422
SmaI CCCGGG 1 cut(s) 365
SmiMI CAYNNNNRTG 9 cut(s) 380, 641, 706, 991, 1117, 1777, 2694, 3782, 4107
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
SpeI ACTAGT 1 cut(s) 1148
SphI GCATGC 2 cut(s) 323, 4379
SseBI AGGCCT 1 cut(s) 79
SstI GAGCTC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 7 cut(s) 362, 363, 1531, 2566, 2815, 3239, 4500
StyI CCWWGG 7 cut(s) 92, 257, 810, 1763, 2082, 2232, 3425
TaaI ACNGT 5 cut(s) 1547, 2775, 3824, 4033, 4159
TaiI ACGT 6 cut(s) 531, 1323, 1929, 2674, 3331, 3341
TaqI TCGA 8 cut(s) 146, 236, 281, 298, 482, 774, 2788, 4424
TatI WGTACW 3 cut(s) 1090, 2971, 4166
TauI GCSGC 5 cut(s) 66, 307, 968, 3205, 4186
TscAI CASTG 6 cut(s) 420, 559, 2296, 3289, 4038, 4132
TseFI GTSAC 7 cut(s) 17, 2287, 2735, 3148, 3280, 3314, 4153
Tsp45I GTSAC 7 cut(s) 17, 2287, 2735, 3148, 3280, 3314, 4153
TspGWI ACGGA 5 cut(s) 69, 555, 2188, 2965, 4113
TspMI CCCGGG 1 cut(s) 363
TspRI CASTG 6 cut(s) 420, 559, 2296, 3289, 4038, 4132
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 3 cut(s) 360, 3177, 3422
VspI ATTAAT 1 cut(s) 1803
XagI CCTNNNNNAGG 2 cut(s) 256, 3091
XapI RAATTY 9 cut(s) 108, 129, 982, 1464, 1859, 2305, 2540, 2635, 2664
XbaI TCTAGA 3 cut(s) 133, 1690, 2803
XceI RCATGY 3 cut(s) 323, 3581, 4379
XcmI CCANNNNNNNNNTGG 1 cut(s) 4267
XmaI CCCGGG 1 cut(s) 363
XmaJI CCTAGG 3 cut(s) 92, 257, 1763
XmnI GAANNNNTTC 1 cut(s) 3791
ZrmI AGTACT 1 cut(s) 1092
Zsp2I ATGCAT 1 cut(s) 4459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.