RchiOBHm_Chr7g0240911

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004120
Physical Location & Seq
Reverse (-)
66867184 .. 66876982
9799 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21591

Sequence Viewer

Length: 4518 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAAGCCTTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTCCTAAAAAGTCGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTGGTTGAGGACGTCTCAGCCTCAGCCTCAGCTGCTGCTCCTTCTTCTTCCTCGAGTGTGGTCCCCACCACCTTGCCGAGGGGGTTGGCTAGCTTCTTGTCCAGGCAATCTGATAGCCGGAAGCGGCACAAGAAGTCGCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTTGAAGGGGTCTAGTGTGTGGGCAGAGACAGAGGAGTACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCTGCTACTAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTCGTAGTTCGAATGAGACTGTAAACGGTGGCAATGCTAATGAGGTTGCCGCCGAGGATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGACGAGATTGTGAATGGCGGGAATGCTAGTGAGGTTGTTGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTAGTTGAAAAGGTTGATGAGAATGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACAGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTTCTGTTTCGGATTCTCCCAGTGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACTTCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTTGGTGCTGATGCAGGGTTGGAGAAAGTCCTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCGATTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGATGTGGATGCATCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGATGAATGGTGGTAGTGGTGGATCTCCGGAGTTTGCCCACTTGTTTTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCAGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGCGGTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGGTAAATTTGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGATGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCTTCACTTGCTGATGATAGCGTGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAACTTAAGACCGTCATTTGCATCATTGGCCGAGTTTGGAGGTTCTGATGCTCCATTATCTGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGGGATTCGGCTGGACAAGATTAAATTAGATAAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCCATCAGTGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAAATTCTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTCGGTGATTGCAAATGTAGATCCATCGTTTTCAGTAGAAAAACCAGTTCCTGAAAGCAAGAAATCGGGGGCAGAAGCTCCTAGTTCTTATGTCCACCTGCCTATGCAGAAGACATTGTCACAGATGGAGAACGGGGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGATGAGAGGAATTTAGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTGTCAGCATAGGTTGCAAAACAATATAACTGCGAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATTGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAATCAATATCTTTGCGAACTTCGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCGTTGATGAACACCCCCATCAGGAGAATGTGGTGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCAGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGCCAATGTTTGGGAGAAAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAATGTAAAAACTCTCAGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTCTATACAATAAGGGCTGAGCTGGAGAGATTACGCCTTATTTGCGAAAGAATTATCAAACGGGAAAAAGTAAAGAGGGAATTACTCATTTGTTCACATGACCTTCTCGCTGTGAAAAGAGATCATGTTGCCCGTTCCGTGCTTGTTAACAGTCCTTTCTTGCTACCGGATGCTAGTTCTGAATCAGCAACAACTTCTCTTAAAGCGCAGACAGATGATTACAGGTCATGCAGTGAGACATTCCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCTGTTAGGCACAGGACTAGAGTTCCTATAACTATTGATAATGACCAAAGGACAGATGATGACAGCTCCACATCCCAAAATCAATTTACCCACAATCTTTCGGATAGGATGCAATTTTCTGAGAAACAGATTCCATTCAGACCTTCTGCCGCGAATTGTAATCTTTCAGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCATGCCGAGATGTTTTCAAAAGAACTGGTGATGACATCAGATCAGGCATCGGTGAAAAATATGCTATTACCCAAAGGATATGCATATGTTCCTGCTGATTGCATTCCAAATGAGAAGCAGGCCAACCAGGATACTTGTTCTGGTGAACGACCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1505

Amino Acids

165.07

Weight (kDa)

6.79

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 367 - 400 2.3e-09 PHD-finger
zf-HC5HC2H_2 PF13832 411 - 529 3.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 439 - 530 2.9e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1115 - 1148 9.8e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1164 - 1270 6.9e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1185 - 1271 3.6e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2589
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 2589
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 2 cut(s) 2642, 3465
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 4301
AccIII TCCGGA 1 cut(s) 1303
AclWI GGATC 6 cut(s) 1306, 1619, 1632, 2046, 2135, 2498
AcoI YGGCCR 2 cut(s) 2091, 3700
AcsI RAATTY 9 cut(s) 132, 517, 1530, 1648, 1772, 1820, 2371, 2761, 3671
AcuI CTGAAG 2 cut(s) 897, 1740
AcyI GRCGYC 3 cut(s) 219, 353, 1938
AfaI GTAC 5 cut(s) 425, 1596, 2163, 3428, 4144
AflII CTTAAG 1 cut(s) 2068
AjnI CCWGG 3 cut(s) 173, 308, 4476
AjuI GAANNNNNNNTTGG 4 cut(s) 1516, 1548, 2629, 2661
AleI CACNNNNGTG 1 cut(s) 3261
Alw21I GWGCWC 2 cut(s) 2358, 3161
AlwI GGATC 6 cut(s) 1306, 1619, 1632, 2046, 2135, 2498
AlwNI CAGNNNCTG 5 cut(s) 242, 1888, 2144, 2534, 3080
Ama87I CYCGRG 2 cut(s) 259, 533
Aor13HI TCCGGA 1 cut(s) 1303
AoxI GGCC 8 cut(s) 10, 171, 180, 2091, 2235, 3640, 3700, 4470
ApoI RAATTY 9 cut(s) 132, 517, 1530, 1648, 1772, 1820, 2371, 2761, 3671
ArsI GACNNNNNNTTYG 2 cut(s) 3663, 3695
Asp700I GAANNNNTTC 1 cut(s) 1571
AspA2I CCTAGG 1 cut(s) 3302
AspLEI GCGC 3 cut(s) 972, 1451, 4078
AspS9I GGNCC 7 cut(s) 268, 1984, 2297, 3174, 3419, 3550, 3640
AsuC2I CCSGG 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 605
AsuNHI GCTAGC 1 cut(s) 296
AvaI CYCGRG 2 cut(s) 259, 533
AvaII GGWCC 6 cut(s) 268, 1984, 2297, 3174, 3419, 3550
AvrII CCTAGG 1 cut(s) 3302
BalI TGGCCA 1 cut(s) 3702
BamHI GGATCC 1 cut(s) 1624
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1551
BauI CACGAG 1 cut(s) 2667
BbsI GAAGAC 2 cut(s) 2600, 3450
Bbv12I GWGCWC 2 cut(s) 2358, 3161
BbvCI CCTCAGC 3 cut(s) 229, 235, 465
BceAI ACGGC 2 cut(s) 184, 3047
BciT130I CCWGG 3 cut(s) 175, 310, 4478
BciVI GTATCC 2 cut(s) 4322, 4474
BcnI CCSGG 1 cut(s) 373
BfmI CTRYAG 6 cut(s) 2145, 3072, 3319, 3414, 3486, 4134
BfoI RGCGCY 2 cut(s) 973, 1452
BfrI CTTAAG 1 cut(s) 2068
BfuAI ACCTGC 1 cut(s) 2589
BfuI GTATCC 2 cut(s) 4322, 4474
BglI GCCNNNNNGGC 1 cut(s) 179
BlnI CCTAGG 1 cut(s) 3302
BlpI GCTNAGC 2 cut(s) 3155, 3888
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 4 cut(s) 175, 310, 373, 4478
Bme18I GGWCC 6 cut(s) 268, 1984, 2297, 3174, 3419, 3550
BmeT110I CYCGRG 2 cut(s) 259, 533
BmgT120I GGNCC 7 cut(s) 268, 1984, 2297, 3174, 3419, 3550, 3640
BmiI GGNNCC 8 cut(s) 70, 102, 270, 1374, 1626, 1859, 1986, 3551
BmrFI CCNGG 4 cut(s) 175, 310, 373, 4478
BmrI ACTGGG 2 cut(s) 909, 2801
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 2 cut(s) 909, 2801
BpiI GAAGAC 2 cut(s) 2600, 3450
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 2 cut(s) 2796, 3914
Bpu10I CCTNAGC 5 cut(s) 229, 235, 460, 465, 2778
Bpu1102I GCTNAGC 2 cut(s) 3155, 3888
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 3836
BpuMI CCSGG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 2906
BsaBI GATNNNNATC 1 cut(s) 3393
BsaHI GRCGYC 3 cut(s) 219, 353, 1938
BsaJI CCNNGG 8 cut(s) 72, 284, 648, 2168, 3200, 3221, 3302, 3422
BsaWI WCCGGW 4 cut(s) 5, 1303, 1399, 4036
BsaXI ACNNNNNCTCC 2 cut(s) 2452, 2482
Bse1I ACTGG 8 cut(s) 915, 1213, 1271, 2528, 2796, 3363, 3520, 4380
Bse3DI GCAATG 3 cut(s) 440, 634, 2003
Bse8I GATNNNNATC 1 cut(s) 3393
BseAI TCCGGA 1 cut(s) 1303
BseBI CCWGG 3 cut(s) 175, 310, 4478
BseDI CCNNGG 8 cut(s) 72, 284, 648, 2168, 3200, 3221, 3302, 3422
BseJI GATNNNNATC 1 cut(s) 3393
BseMI GCAATG 3 cut(s) 440, 634, 2003
BseNI ACTGG 8 cut(s) 915, 1213, 1271, 2528, 2796, 3363, 3520, 4380
BseRI GAGGAG 6 cut(s) 89, 434, 596, 836, 1843, 2188
BsgI GTGCAG 2 cut(s) 3285, 3712
Bsh1236I CGCG 1 cut(s) 4301
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 8 cut(s) 12, 173, 182, 2093, 2237, 3642, 3702, 4472
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 2358, 3161
BsiHKCI CYCGRG 2 cut(s) 259, 533
BsiSI CCGG 8 cut(s) 6, 116, 128, 325, 373, 1304, 1400, 4037
BslFI GGGAC 5 cut(s) 254, 579, 1970, 3218, 3612
BsmBI CGTCTC 4 cut(s) 226, 1945, 3022, 3326
BsmFI GGGAC 5 cut(s) 254, 579, 1970, 3218, 3612
BsmI GAATGC 7 cut(s) 346, 367, 670, 715, 745, 1585, 4452
BsnI GGCC 8 cut(s) 12, 173, 182, 2093, 2237, 3642, 3702, 4472
BsoBI CYCGRG 2 cut(s) 259, 533
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 3 cut(s) 1551, 2358, 3161
Bsp13I TCCGGA 1 cut(s) 1303
Bsp143I GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
Bsp1720I GCTNAGC 2 cut(s) 3155, 3888
Bsp19I CCATGG 1 cut(s) 3422
BspANI GGCC 8 cut(s) 12, 173, 182, 2093, 2237, 3642, 3702, 4472
BspEI TCCGGA 1 cut(s) 1303
BspFNI CGCG 1 cut(s) 4301
BspHI TCATGA 1 cut(s) 1380
BspLI GGNNCC 8 cut(s) 70, 102, 270, 1374, 1626, 1859, 1986, 3551
BspMAI CTGCAG 3 cut(s) 3076, 3323, 3490
BspMI ACCTGC 1 cut(s) 2589
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 6 cut(s) 1306, 1619, 1632, 2046, 2135, 2498
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 2068
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 3 cut(s) 440, 634, 2003
BsrI ACTGG 8 cut(s) 915, 1213, 1271, 2528, 2796, 3363, 3520, 4380
BssECI CCNNGG 8 cut(s) 72, 284, 648, 2168, 3200, 3221, 3302, 3422
BssMI GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
BssNI GRCGYC 3 cut(s) 219, 353, 1938
BssSI CACGAG 1 cut(s) 2667
BssT1I CCWWGG 3 cut(s) 3221, 3302, 3422
Bst2BI CACGAG 1 cut(s) 2667
Bst2UI CCWGG 3 cut(s) 175, 310, 4478
Bst6I CTCTTC 4 cut(s) 813, 873, 2310, 3091
BstACI GRCGYC 3 cut(s) 219, 353, 1938
BstAFI CTTAAG 1 cut(s) 2068
BstAPI GCANNNNNTGC 4 cut(s) 2857, 3071, 3080, 3690
BstBAI YACGTR 1 cut(s) 2906
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 6 cut(s) 298, 1477, 2235, 3779, 4353, 4470
BstDSI CCRYGG 3 cut(s) 2168, 3200, 3422
BstENI CCTNNNNNAGG 2 cut(s) 283, 3088
BstFNI CGCG 1 cut(s) 4301
BstH2I RGCGCY 2 cut(s) 973, 1452
BstHHI GCGC 3 cut(s) 972, 1451, 4078
BstKTI GATC 9 cut(s) 1301, 1627, 1790, 2041, 2143, 2506, 3994, 4121, 4393
BstMBI GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 3 cut(s) 175, 310, 4478
BstNSI RCATGY 1 cut(s) 4355
BstSCI CCNGG 4 cut(s) 173, 308, 371, 4476
BstSFI CTRYAG 6 cut(s) 2145, 3072, 3319, 3414, 3486, 4134
BstSNI TACGTA 1 cut(s) 2906
BstUI CGCG 1 cut(s) 4301
BstV2I GAAGAC 2 cut(s) 2600, 3450
BstX2I RGATCY 5 cut(s) 1298, 1624, 2038, 2140, 2503
BstYI RGATCY 5 cut(s) 1298, 1624, 2038, 2140, 2503
BsuI GTATCC 2 cut(s) 4322, 4474
BsuRI GGCC 8 cut(s) 12, 173, 182, 2093, 2237, 3642, 3702, 4472
BtgI CCRYGG 3 cut(s) 2168, 3200, 3422
BtsI GCAGTG 1 cut(s) 4108
BveI ACCTGC 1 cut(s) 2589
Cac8I GCNNGC 6 cut(s) 298, 1477, 2235, 3779, 4353, 4470
CaiI CAGNNNCTG 5 cut(s) 242, 1888, 2144, 2534, 3080
CciI TCATGA 1 cut(s) 1380
CfoI GCGC 3 cut(s) 972, 1451, 4078
Cfr13I GGNCC 7 cut(s) 268, 1984, 2297, 3174, 3419, 3550, 3640
CseI GACGC 3 cut(s) 342, 1927, 3675
Csp6I GTAC 5 cut(s) 424, 1595, 2162, 3427, 4143
CspCI CAANNNNNGTGG 2 cut(s) 1304, 1339
CviQI GTAC 5 cut(s) 424, 1595, 2162, 3427, 4143
DpnI GATC 9 cut(s) 1300, 1626, 1789, 2040, 2142, 2505, 3993, 4120, 4392
DpnII GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
DraI TTTAAA 1 cut(s) 2202
EaeI YGGCCR 2 cut(s) 2091, 3700
Eam1104I CTCTTC 4 cut(s) 813, 873, 2310, 3091
EarI CTCTTC 4 cut(s) 813, 873, 2310, 3091
EciI GGCGGA 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 2906
Eco130I CCWWGG 3 cut(s) 3221, 3302, 3422
Eco147I AGGCCT 2 cut(s) 182, 2237
Eco24I GRGCYC 1 cut(s) 1551
Eco32I GATATC 2 cut(s) 3286, 3316
Eco47I GGWCC 6 cut(s) 268, 1984, 2297, 3174, 3419, 3550
Eco57I CTGAAG 2 cut(s) 897, 1740
Eco88I CYCGRG 2 cut(s) 259, 533
EcoNI CCTNNNNNAGG 2 cut(s) 283, 3088
EcoO109I RGGNCCY 1 cut(s) 3640
EcoRI GAATTC 1 cut(s) 1648
EcoRII CCWGG 3 cut(s) 173, 308, 4476
EcoRV GATATC 2 cut(s) 3286, 3316
EcoT14I CCWWGG 3 cut(s) 3221, 3302, 3422
EcoT22I ATGCAT 3 cut(s) 1177, 1852, 4435
EcoT38I GRGCYC 1 cut(s) 1551
ErhI CCWWGG 3 cut(s) 3221, 3302, 3422
Esp3I CGTCTC 4 cut(s) 226, 1945, 3022, 3326
FaqI GGGAC 5 cut(s) 254, 579, 1970, 3218, 3612
FauI CCCGC 2 cut(s) 698, 1415
FauNDI CATATG 2 cut(s) 1430, 4435
FriOI GRGCYC 1 cut(s) 1551
GlaI GCGC 3 cut(s) 971, 1450, 4077
GsuI CTGGAG 2 cut(s) 2796, 3914
HaeII RGCGCY 2 cut(s) 973, 1452
HaeIII GGCC 8 cut(s) 12, 173, 182, 2093, 2237, 3642, 3702, 4472
HapII CCGG 8 cut(s) 6, 116, 128, 325, 373, 1304, 1400, 4037
HgaI GACGC 3 cut(s) 342, 1927, 3675
HhaI GCGC 3 cut(s) 972, 1451, 4078
Hin1I GRCGYC 3 cut(s) 219, 353, 1938
Hin6I GCGC 3 cut(s) 970, 1449, 4076
HinP1I GCGC 3 cut(s) 970, 1449, 4076
HincII GTYRAC 2 cut(s) 3585, 4018
HindII GTYRAC 2 cut(s) 3585, 4018
HpaI GTTAAC 1 cut(s) 4018
HpaII CCGG 8 cut(s) 6, 116, 128, 325, 373, 1304, 1400, 4037
Hpy166II GTNNAC 8 cut(s) 619, 2578, 2789, 3382, 3585, 3965, 4018, 4496
Hpy188III TCNNGA 9 cut(s) 533, 1304, 1381, 2450, 2534, 2801, 2813, 2999, 3137
Hpy8I GTNNAC 8 cut(s) 619, 2578, 2789, 3382, 3585, 3965, 4018, 4496
Hpy99I CGWCG 2 cut(s) 358, 3669
HpyCH4IV ACGT 3 cut(s) 219, 2905, 3325
HpySE526I ACGT 3 cut(s) 219, 2905, 3325
Hsp92I GRCGYC 3 cut(s) 219, 353, 1938
HspAI GCGC 3 cut(s) 970, 1449, 4076
Kpn2I TCCGGA 1 cut(s) 1303
KspAI GTTAAC 1 cut(s) 4018
Kzo9I GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
LmnI GCTCC 5 cut(s) 250, 1830, 2119, 2566, 4220
MaeII ACGT 3 cut(s) 219, 2905, 3325
MaeIII GTNAC 9 cut(s) 17, 1424, 1675, 1683, 2243, 2364, 2458, 2601, 4129
MalI GATC 9 cut(s) 1300, 1626, 1789, 2040, 2142, 2505, 3993, 4120, 4392
MbiI CCGCTC 1 cut(s) 193
MboI GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
MflI RGATCY 5 cut(s) 1298, 1624, 2038, 2140, 2503
MhlI GDGCHC 3 cut(s) 1551, 2358, 3161
MlsI TGGCCA 1 cut(s) 3702
MluNI TGGCCA 1 cut(s) 3702
MlyI GAGTC 6 cut(s) 115, 1103, 2135, 2327, 2929, 3590
MmeI TCCRAC 4 cut(s) 336, 993, 1369, 1908
Mox20I TGGCCA 1 cut(s) 3702
Mph1103I ATGCAT 3 cut(s) 1177, 1852, 4435
MroI TCCGGA 1 cut(s) 1303
MroXI GAANNNNTTC 1 cut(s) 1571
MscI TGGCCA 1 cut(s) 3702
MslI CAYNNNNRTG 4 cut(s) 1057, 1183, 2691, 3261
Msp20I TGGCCA 1 cut(s) 3702
MspA1I CMGCKG 3 cut(s) 239, 3062, 3077
MspCI CTTAAG 1 cut(s) 2068
MspI CCGG 8 cut(s) 6, 116, 128, 325, 373, 1304, 1400, 4037
MspR9I CCNGG 4 cut(s) 175, 310, 373, 4478
Mva1269I GAATGC 7 cut(s) 346, 367, 670, 715, 745, 1585, 4452
MvaI CCWGG 3 cut(s) 175, 310, 4478
MvnI CGCG 1 cut(s) 4301
NciI CCSGG 1 cut(s) 373
NcoI CCATGG 1 cut(s) 3422
NdeI CATATG 2 cut(s) 1430, 4435
NdeII GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 8 cut(s) 70, 102, 270, 1374, 1626, 1859, 1986, 3551
NmeAIII GCCGAG 4 cut(s) 309, 673, 2119, 4381
NmuCI GTSAC 7 cut(s) 17, 1675, 1683, 2243, 2458, 2601, 4129
NsiI ATGCAT 3 cut(s) 1177, 1852, 4435
NspI RCATGY 1 cut(s) 4355
NspV TTCGAA 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 3261
PaeI GCATGC 1 cut(s) 4355
PaeR7I CTCGAG 1 cut(s) 259
PagI TCATGA 1 cut(s) 1380
PaqCI CACCTGC 1 cut(s) 2589
PceI AGGCCT 2 cut(s) 182, 2237
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PctI GAATGC 7 cut(s) 346, 367, 670, 715, 745, 1585, 4452
PdmI GAANNNNTTC 1 cut(s) 1571
PflFI GACNNNGTC 2 cut(s) 1681, 2599
PflMI CCANNNNNTGG 2 cut(s) 2642, 3465
PleI GAGTC 6 cut(s) 115, 1102, 2134, 2326, 2928, 3589
PpsI GAGTC 6 cut(s) 115, 1102, 2134, 2326, 2928, 3589
Ppu21I YACGTR 1 cut(s) 2906
Psp6I CCWGG 3 cut(s) 173, 308, 4476
PspGI CCWGG 3 cut(s) 173, 308, 4476
PspN4I GGNNCC 8 cut(s) 70, 102, 270, 1374, 1626, 1859, 1986, 3551
PspPI GGNCC 7 cut(s) 268, 1984, 2297, 3174, 3419, 3550, 3640
PspXI VCTCGAGB 1 cut(s) 259
PstI CTGCAG 3 cut(s) 3076, 3323, 3490
PstNI CAGNNNCTG 5 cut(s) 242, 1888, 2144, 2534, 3080
PsuI RGATCY 5 cut(s) 1298, 1624, 2038, 2140, 2503
PsyI GACNNNGTC 2 cut(s) 1681, 2599
PvuII CAGCTG 3 cut(s) 239, 3062, 3077
RsaI GTAC 5 cut(s) 425, 1596, 2163, 3428, 4144
RsaNI GTAC 5 cut(s) 424, 1595, 2162, 3427, 4143
RseI CAYNNNNRTG 4 cut(s) 1057, 1183, 2691, 3261
Sau3AI GATC 9 cut(s) 1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
Sau96I GGNCC 7 cut(s) 268, 1984, 2297, 3174, 3419, 3550, 3640
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 6 cut(s) 115, 1103, 2135, 2327, 2929, 3590
ScrFI CCNGG 4 cut(s) 175, 310, 373, 4478
SduI GDGCHC 3 cut(s) 1551, 2358, 3161
SfcI CTRYAG 6 cut(s) 2145, 3072, 3319, 3414, 3486, 4134
SfiI GGCCNNNNNGGCC 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 605
SinI GGWCC 6 cut(s) 268, 1984, 2297, 3174, 3419, 3550
SlaI CTCGAG 1 cut(s) 259
SmiMI CAYNNNNRTG 4 cut(s) 1057, 1183, 2691, 3261
SmlI CTYRAG 3 cut(s) 259, 2068, 3815
SmoI CTYRAG 3 cut(s) 259, 2068, 3815
SnaBI TACGTA 1 cut(s) 2906
SphI GCATGC 1 cut(s) 4355
SseBI AGGCCT 2 cut(s) 182, 2237
SspI AATATT 1 cut(s) 529
StuI AGGCCT 2 cut(s) 182, 2237
StyD4I CCNGG 4 cut(s) 173, 308, 371, 4476
StyI CCWWGG 3 cut(s) 3221, 3302, 3422
TaiI ACGT 3 cut(s) 222, 2908, 3328
TaqI TCGA 6 cut(s) 260, 509, 605, 851, 1459, 2998
TatI WGTACW 2 cut(s) 423, 4142
TauI GCSGC 4 cut(s) 69, 334, 647, 4301
TseFI GTSAC 7 cut(s) 17, 1675, 1683, 2243, 2458, 2601, 4129
Tsp45I GTSAC 7 cut(s) 17, 1675, 1683, 2243, 2458, 2601, 4129
TspGWI ACGGA 5 cut(s) 72, 810, 2185, 2962, 3997
Tth111I GACNNNGTC 2 cut(s) 1681, 2599
Van91I CCANNNNNTGG 2 cut(s) 2642, 3465
Vha464I CTTAAG 1 cut(s) 2068
VpaK11BI GGWCC 6 cut(s) 268, 1984, 2297, 3174, 3419, 3550
XagI CCTNNNNNAGG 2 cut(s) 283, 3088
XapI RAATTY 9 cut(s) 132, 517, 1530, 1648, 1772, 1820, 2371, 2761, 3671
XbaI TCTAGA 1 cut(s) 2800
XceI RCATGY 1 cut(s) 4355
XhoI CTCGAG 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 3302
XmnI GAANNNNTTC 1 cut(s) 1571
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 425
Zsp2I ATGCAT 3 cut(s) 1177, 1852, 4435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.