Rh7DG479500

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004120
Physical Location & Seq
Reverse (-)
68451526 .. 68461221
9696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG479500.1

Sequence Viewer

Length: 3909 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAAGCCCTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTCCTAAAAAGTCGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTTGTTGAGGACGTCTCGGCCTCAGCCTCAGCTGCTGCTGCTCCTTCTTCTTCGGGTGTGGTCCCCACCACCTTGCCGAGGGGGTTGGCTAGCTTCTTGTCCAGGCAATCTGATAGCCGGAAGCGGCACAAGAAGTCTCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTTGAAGGGGTATAGTGTGTGGGCAGAGACAGAGGAGTACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCTGCTACTAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTCGTAATTCGAATGAGACTGTAAACGGTGGCAATGCTAATGAGGTTGCCGCCGAGGATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGATGAGATTGTGAATGGCGGGAATGCTAGTGAGGTTGTTGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTAGTTGAAAAGGTTAATGAGAATGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACGGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTTCTGTTTCGGATTCTGATTCTCCCAGGGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACTTCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTCGGTGCTGATGCAGGGTTGGAGAAAGTCCTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCGATTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGACGTAGATGCATCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGAAGAATGGTAATAGTGGTGGATCTCCGGAGTTTGCCCACTTGTTTTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCAGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGCGGTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGGTAAATTCGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGACGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCTTCACTTGCTGATGATAGCATGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAACTTAAGACCGTCATTTGCATCATTGGCCGAGTTTGGAGGTTCTGATGCTCCATTATCAGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGAGATTCCGCTGGACAAGATTAAATTAGATAAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCCATCAGTGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTCTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTCGGTGATTGCAAATGTAGATCCATCGTTTTCAGTTGAAAAACCAGTTCCTGAAAGCAAGAAATCGGGGGCAGAAGCTCCTAGTTCTTATGTCCACCCGCCTATGCAGAAGACATTATCACAGATGGAGAACGGGGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGATGAGAGGAATTTAGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTATCAGCATAGGTTGCAAAACAATATAACTGTGAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATTGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAACCAATATCTTTGCGAGCTTCGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCGTTGATGAACACCCCCAGCAGGAGAATGTGGTGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCTGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGCCAATGTTTGGGAGAAAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAATGTAAAAACTCTCGGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTCTATACAATAAGGGTGGGGGTTATTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1302

Amino Acids

142.37

Weight (kDa)

6.9

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 369 - 402 2e-09 PHD-finger
zf-HC5HC2H_2 PF13832 413 - 531 2.3e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 441 - 532 2.4e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1117 - 1150 8.3e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1166 - 1272 8.4e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1187 - 1273 4e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 2 cut(s) 2648, 3471
AccBSI CCGCTC 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 1309
AclWI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
AcoI YGGCCR 2 cut(s) 2097, 3706
AcsI RAATTY 8 cut(s) 132, 517, 1536, 1654, 1778, 1826, 2767, 3677
AcuI CTGAAG 3 cut(s) 897, 1304, 1746
AcyI GRCGYC 3 cut(s) 219, 353, 1944
AfaI GTAC 4 cut(s) 425, 1602, 2169, 3434
AflII CTTAAG 1 cut(s) 2074
AjiI CACGTC 1 cut(s) 1918
AjnI CCWGG 3 cut(s) 173, 308, 920
AjuI GAANNNNNNNTTGG 4 cut(s) 1522, 1554, 2635, 2667
AleI CACNNNNGTG 1 cut(s) 3267
Alw21I GWGCWC 2 cut(s) 2364, 3167
AlwI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
AlwNI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
Ama87I CYCGRG 1 cut(s) 533
Aor13HI TCCGGA 1 cut(s) 1309
AoxI GGCC 8 cut(s) 10, 171, 180, 225, 2097, 2241, 3646, 3706
ApoI RAATTY 8 cut(s) 132, 517, 1536, 1654, 1778, 1826, 2767, 3677
ArsI GACNNNNNNTTYG 2 cut(s) 3669, 3701
Asp700I GAANNNNTTC 1 cut(s) 1577
AspA2I CCTAGG 1 cut(s) 3308
AspLEI GCGC 2 cut(s) 978, 1457
AspS9I GGNCC 7 cut(s) 268, 1990, 2303, 3180, 3425, 3556, 3646
AsuC2I CCSGG 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 605
AsuNHI GCTAGC 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 6 cut(s) 268, 1990, 2303, 3180, 3425, 3556
AvrII CCTAGG 1 cut(s) 3308
BalI TGGCCA 1 cut(s) 3708
BamHI GGATCC 1 cut(s) 1630
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1557
BauI CACGAG 1 cut(s) 2673
BbsI GAAGAC 3 cut(s) 1176, 2606, 3456
Bbv12I GWGCWC 2 cut(s) 2364, 3167
BbvCI CCTCAGC 3 cut(s) 229, 235, 465
BceAI ACGGC 2 cut(s) 184, 3053
BciT130I CCWGG 3 cut(s) 175, 310, 922
BcnI CCSGG 1 cut(s) 373
BfmI CTRYAG 5 cut(s) 2151, 3078, 3325, 3420, 3492
BfoI RGCGCY 2 cut(s) 979, 1458
BfrI CTTAAG 1 cut(s) 2074
BglI GCCNNNNNGGC 1 cut(s) 179
BlnI CCTAGG 1 cut(s) 3308
BlpI GCTNAGC 1 cut(s) 3161
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 4 cut(s) 175, 310, 373, 922
Bme18I GGWCC 6 cut(s) 268, 1990, 2303, 3180, 3425, 3556
BmeT110I CYCGRG 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 1918
BmgT120I GGNCC 7 cut(s) 268, 1990, 2303, 3180, 3425, 3556, 3646
BmiI GGNNCC 8 cut(s) 70, 102, 270, 1380, 1632, 1865, 1992, 3557
BmrFI CCNGG 4 cut(s) 175, 310, 373, 922
BmrI ACTGGG 1 cut(s) 2807
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 2807
BpiI GAAGAC 3 cut(s) 1176, 2606, 3456
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 2802
Bpu10I CCTNAGC 5 cut(s) 229, 235, 460, 465, 2784
Bpu1102I GCTNAGC 1 cut(s) 3161
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 3842
BpuMI CCSGG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 2912
BsaBI GATNNNNATC 1 cut(s) 3399
BsaHI GRCGYC 3 cut(s) 219, 353, 1944
BsaWI WCCGGW 3 cut(s) 5, 1309, 1405
BsaXI ACNNNNNCTCC 2 cut(s) 2458, 2488
Bse1I ACTGG 6 cut(s) 1219, 1277, 2534, 2802, 3369, 3526
Bse3DI GCAATG 3 cut(s) 440, 634, 2009
Bse8I GATNNNNATC 1 cut(s) 3399
BseAI TCCGGA 1 cut(s) 1309
BseBI CCWGG 3 cut(s) 175, 310, 922
BseJI GATNNNNATC 1 cut(s) 3399
BseMI GCAATG 3 cut(s) 440, 634, 2009
BseMII CTCAG 9 cut(s) 182, 243, 249, 456, 465, 3152, 3300, 3327, 3564
BseNI ACTGG 6 cut(s) 1219, 1277, 2534, 2802, 3369, 3526
BseRI GAGGAG 6 cut(s) 89, 434, 596, 836, 1849, 2194
BseYI CCCAGC 1 cut(s) 3138
BsgI GTGCAG 2 cut(s) 3291, 3718
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 8 cut(s) 12, 173, 182, 227, 2099, 2243, 3648, 3708
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 2364, 3167
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 7 cut(s) 6, 116, 128, 325, 373, 1310, 1406
BslFI GGGAC 5 cut(s) 254, 579, 1976, 3224, 3618
BsmBI CGTCTC 4 cut(s) 226, 1951, 3028, 3332
BsmFI GGGAC 5 cut(s) 254, 579, 1976, 3224, 3618
BsmI GAATGC 5 cut(s) 367, 670, 715, 745, 1591
BsnI GGCC 8 cut(s) 12, 173, 182, 227, 2099, 2243, 3648, 3708
BsoBI CYCGRG 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 3 cut(s) 1557, 2364, 3167
Bsp13I TCCGGA 1 cut(s) 1309
Bsp143I GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
Bsp1720I GCTNAGC 1 cut(s) 3161
Bsp19I CCATGG 1 cut(s) 3428
BspANI GGCC 8 cut(s) 12, 173, 182, 227, 2099, 2243, 3648, 3708
BspCNI CTCAG 9 cut(s) 181, 242, 248, 457, 466, 3153, 3299, 3328, 3565
BspEI TCCGGA 1 cut(s) 1309
BspHI TCATGA 1 cut(s) 1386
BspLI GGNNCC 8 cut(s) 70, 102, 270, 1380, 1632, 1865, 1992, 3557
BspMAI CTGCAG 3 cut(s) 3082, 3329, 3496
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 2074
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 3 cut(s) 440, 634, 2009
BsrI ACTGG 6 cut(s) 1219, 1277, 2534, 2802, 3369, 3526
BssMI GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
BssNI GRCGYC 3 cut(s) 219, 353, 1944
BssSI CACGAG 1 cut(s) 2673
BssT1I CCWWGG 3 cut(s) 3227, 3308, 3428
Bst2BI CACGAG 1 cut(s) 2673
Bst2UI CCWGG 3 cut(s) 175, 310, 922
Bst6I CTCTTC 4 cut(s) 813, 873, 2316, 3097
BstACI GRCGYC 3 cut(s) 219, 353, 1944
BstAFI CTTAAG 1 cut(s) 2074
BstAPI GCANNNNNTGC 4 cut(s) 2863, 3077, 3086, 3696
BstBAI YACGTR 1 cut(s) 2912
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 5 cut(s) 298, 1483, 2241, 2999, 3785
BstDSI CCRYGG 3 cut(s) 2174, 3206, 3428
BstENI CCTNNNNNAGG 2 cut(s) 283, 3094
BstH2I RGCGCY 2 cut(s) 979, 1458
BstHHI GCGC 2 cut(s) 978, 1457
BstKTI GATC 6 cut(s) 1307, 1633, 1796, 2047, 2149, 2512
BstMBI GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 3 cut(s) 175, 310, 922
BstSCI CCNGG 4 cut(s) 173, 308, 371, 920
BstSFI CTRYAG 5 cut(s) 2151, 3078, 3325, 3420, 3492
BstSNI TACGTA 1 cut(s) 2912
BstV2I GAAGAC 3 cut(s) 1176, 2606, 3456
BstX2I RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
BstYI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
BsuRI GGCC 8 cut(s) 12, 173, 182, 227, 2099, 2243, 3648, 3708
BtgI CCRYGG 3 cut(s) 2174, 3206, 3428
BtrI CACGTC 1 cut(s) 1918
Cac8I GCNNGC 5 cut(s) 298, 1483, 2241, 2999, 3785
CaiI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
CciI TCATGA 1 cut(s) 1386
CfoI GCGC 2 cut(s) 978, 1457
Cfr13I GGNCC 7 cut(s) 268, 1990, 2303, 3180, 3425, 3556, 3646
CseI GACGC 3 cut(s) 342, 1933, 3681
Csp6I GTAC 4 cut(s) 424, 1601, 2168, 3433
CspCI CAANNNNNGTGG 4 cut(s) 1310, 1345, 3873, 3908
CviQI GTAC 4 cut(s) 424, 1601, 2168, 3433
DpnI GATC 6 cut(s) 1306, 1632, 1795, 2046, 2148, 2511
DpnII GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
DraI TTTAAA 1 cut(s) 2208
EaeI YGGCCR 2 cut(s) 2097, 3706
Eam1104I CTCTTC 4 cut(s) 813, 873, 2316, 3097
EarI CTCTTC 4 cut(s) 813, 873, 2316, 3097
EciI GGCGGA 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 2912
Eco130I CCWWGG 3 cut(s) 3227, 3308, 3428
Eco147I AGGCCT 2 cut(s) 182, 2243
Eco24I GRGCYC 1 cut(s) 1557
Eco32I GATATC 2 cut(s) 3292, 3322
Eco47I GGWCC 6 cut(s) 268, 1990, 2303, 3180, 3425, 3556
Eco57I CTGAAG 3 cut(s) 897, 1304, 1746
Eco88I CYCGRG 1 cut(s) 533
EcoNI CCTNNNNNAGG 2 cut(s) 283, 3094
EcoO109I RGGNCCY 1 cut(s) 3646
EcoRI GAATTC 1 cut(s) 1654
EcoRII CCWGG 3 cut(s) 173, 308, 920
EcoRV GATATC 2 cut(s) 3292, 3322
EcoT14I CCWWGG 3 cut(s) 3227, 3308, 3428
EcoT22I ATGCAT 2 cut(s) 1183, 1858
EcoT38I GRGCYC 1 cut(s) 1557
ErhI CCWWGG 3 cut(s) 3227, 3308, 3428
Esp3I CGTCTC 4 cut(s) 226, 1951, 3028, 3332
FaqI GGGAC 5 cut(s) 254, 579, 1976, 3224, 3618
FauI CCCGC 3 cut(s) 698, 1421, 2595
FauNDI CATATG 1 cut(s) 1436
FriOI GRGCYC 1 cut(s) 1557
GlaI GCGC 2 cut(s) 977, 1456
GsaI CCCAGC 1 cut(s) 3142
GsuI CTGGAG 1 cut(s) 2802
HaeII RGCGCY 2 cut(s) 979, 1458
HaeIII GGCC 8 cut(s) 12, 173, 182, 227, 2099, 2243, 3648, 3708
HapII CCGG 7 cut(s) 6, 116, 128, 325, 373, 1310, 1406
HgaI GACGC 3 cut(s) 342, 1933, 3681
HhaI GCGC 2 cut(s) 978, 1457
Hin1I GRCGYC 3 cut(s) 219, 353, 1944
Hin6I GCGC 2 cut(s) 976, 1455
HinP1I GCGC 2 cut(s) 976, 1455
HincII GTYRAC 3 cut(s) 1915, 2983, 3591
HindII GTYRAC 3 cut(s) 1915, 2983, 3591
HpaI GTTAAC 1 cut(s) 2983
HpaII CCGG 7 cut(s) 6, 116, 128, 325, 373, 1310, 1406
Hpy166II GTNNAC 7 cut(s) 619, 1915, 2584, 2795, 2983, 3388, 3591
Hpy188III TCNNGA 9 cut(s) 533, 1310, 1387, 1831, 2456, 2540, 2807, 2819, 3005
Hpy8I GTNNAC 7 cut(s) 619, 1915, 2584, 2795, 2983, 3388, 3591
Hpy99I CGWCG 2 cut(s) 358, 3675
HpyCH4IV ACGT 5 cut(s) 219, 1173, 1917, 2911, 3331
HpySE526I ACGT 5 cut(s) 219, 1173, 1917, 2911, 3331
Hsp92I GRCGYC 3 cut(s) 219, 353, 1944
HspAI GCGC 2 cut(s) 976, 1455
Kpn2I TCCGGA 1 cut(s) 1309
KspAI GTTAAC 1 cut(s) 2983
Kzo9I GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
LmnI GCTCC 5 cut(s) 253, 835, 1836, 2125, 2572
MaeII ACGT 5 cut(s) 219, 1173, 1917, 2911, 3331
MaeIII GTNAC 7 cut(s) 17, 1430, 1681, 1689, 2249, 2370, 2464
MalI GATC 6 cut(s) 1306, 1632, 1795, 2046, 2148, 2511
MbiI CCGCTC 1 cut(s) 193
MboI GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
MflI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
MhlI GDGCHC 3 cut(s) 1557, 2364, 3167
MlsI TGGCCA 1 cut(s) 3708
MluNI TGGCCA 1 cut(s) 3708
MlyI GAGTC 6 cut(s) 115, 1109, 2141, 2333, 2935, 3596
MmeI TCCRAC 4 cut(s) 336, 999, 1375, 1914
Mox20I TGGCCA 1 cut(s) 3708
Mph1103I ATGCAT 2 cut(s) 1183, 1858
MroI TCCGGA 1 cut(s) 1309
MroXI GAANNNNTTC 1 cut(s) 1577
MscI TGGCCA 1 cut(s) 3708
MslI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
Msp20I TGGCCA 1 cut(s) 3708
MspA1I CMGCKG 4 cut(s) 239, 2266, 3068, 3083
MspCI CTTAAG 1 cut(s) 2074
MspI CCGG 7 cut(s) 6, 116, 128, 325, 373, 1310, 1406
MspR9I CCNGG 4 cut(s) 175, 310, 373, 922
Mva1269I GAATGC 5 cut(s) 367, 670, 715, 745, 1591
MvaI CCWGG 3 cut(s) 175, 310, 922
NciI CCSGG 1 cut(s) 373
NcoI CCATGG 1 cut(s) 3428
NdeI CATATG 1 cut(s) 1436
NdeII GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 8 cut(s) 70, 102, 270, 1380, 1632, 1865, 1992, 3557
NmeAIII GCCGAG 4 cut(s) 203, 309, 673, 2125
NmuCI GTSAC 5 cut(s) 17, 1681, 1689, 2249, 2464
NsiI ATGCAT 2 cut(s) 1183, 1858
NspV TTCGAA 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 3267
PagI TCATGA 1 cut(s) 1386
PasI CCCWGGG 1 cut(s) 921
PceI AGGCCT 2 cut(s) 182, 2243
PctI GAATGC 5 cut(s) 367, 670, 715, 745, 1591
PdmI GAANNNNTTC 1 cut(s) 1577
PflFI GACNNNGTC 1 cut(s) 1687
PflMI CCANNNNNTGG 2 cut(s) 2648, 3471
PleI GAGTC 6 cut(s) 115, 1108, 2140, 2332, 2934, 3595
PpsI GAGTC 6 cut(s) 115, 1108, 2140, 2332, 2934, 3595
Ppu21I YACGTR 1 cut(s) 2912
Psp6I CCWGG 3 cut(s) 173, 308, 920
PspFI CCCAGC 1 cut(s) 3138
PspGI CCWGG 3 cut(s) 173, 308, 920
PspN4I GGNNCC 8 cut(s) 70, 102, 270, 1380, 1632, 1865, 1992, 3557
PspPI GGNCC 7 cut(s) 268, 1990, 2303, 3180, 3425, 3556, 3646
PstI CTGCAG 3 cut(s) 3082, 3329, 3496
PstNI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
PsuI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
PsyI GACNNNGTC 1 cut(s) 1687
PvuII CAGCTG 3 cut(s) 239, 3068, 3083
RsaI GTAC 4 cut(s) 425, 1602, 2169, 3434
RsaNI GTAC 4 cut(s) 424, 1601, 2168, 3433
RseI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
Sau3AI GATC 6 cut(s) 1304, 1630, 1793, 2044, 2146, 2509
Sau96I GGNCC 7 cut(s) 268, 1990, 2303, 3180, 3425, 3556, 3646
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 6 cut(s) 115, 1109, 2141, 2333, 2935, 3596
ScrFI CCNGG 4 cut(s) 175, 310, 373, 922
SduI GDGCHC 3 cut(s) 1557, 2364, 3167
SfcI CTRYAG 5 cut(s) 2151, 3078, 3325, 3420, 3492
SfiI GGCCNNNNNGGCC 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 605
SinI GGWCC 6 cut(s) 268, 1990, 2303, 3180, 3425, 3556
SmiMI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
SmlI CTYRAG 2 cut(s) 2074, 3821
SmoI CTYRAG 2 cut(s) 2074, 3821
SnaBI TACGTA 1 cut(s) 2912
SseBI AGGCCT 2 cut(s) 182, 2243
SspI AATATT 1 cut(s) 529
StuI AGGCCT 2 cut(s) 182, 2243
StyD4I CCNGG 4 cut(s) 173, 308, 371, 920
StyI CCWWGG 3 cut(s) 3227, 3308, 3428
TaiI ACGT 5 cut(s) 222, 1176, 1920, 2914, 3334
TaqI TCGA 6 cut(s) 509, 605, 851, 1465, 1830, 3004
TatI WGTACW 1 cut(s) 423
TauI GCSGC 3 cut(s) 69, 334, 647
TseFI GTSAC 5 cut(s) 17, 1681, 1689, 2249, 2464
Tsp45I GTSAC 5 cut(s) 17, 1681, 1689, 2249, 2464
TspGWI ACGGA 5 cut(s) 72, 810, 848, 2191, 2968
Tth111I GACNNNGTC 1 cut(s) 1687
Van91I CCANNNNNTGG 2 cut(s) 2648, 3471
Vha464I CTTAAG 1 cut(s) 2074
VpaK11BI GGWCC 6 cut(s) 268, 1990, 2303, 3180, 3425, 3556
XagI CCTNNNNNAGG 2 cut(s) 283, 3094
XapI RAATTY 8 cut(s) 132, 517, 1536, 1654, 1778, 1826, 2767, 3677
XbaI TCTAGA 1 cut(s) 2806
XmaJI CCTAGG 1 cut(s) 3308
XmnI GAANNNNTTC 1 cut(s) 1577
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 425
Zsp2I ATGCAT 2 cut(s) 1183, 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.