FvH4_5g38940

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004120
Physical Location & Seq
Reverse (-)
28750849 .. 28760891
10043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38940.t2

Sequence Viewer

Length: 4446 bp
ATGACCGGAGGCCGATGTCACGGGAAAAAGAAGAAGCAGATGATGATGGCCAACGGGGGCTGCGCCACGGAGGAGGAGAAGCCCTGCCCGATTTCTAGGGCTCCGTCCAAGATTCCGGCGACTCTGCCGGAAGTTTCCAAAAACCCGGTGGATTTGTATTCTCAGGCGAGGAAGGCCTTGTGCGAGCGGTCGCCGTATGATGTTGTGGAAGACGTCTCGGCCGGTGGCGGCGGCGGCGGTGGTTCGACTGTGGTCCCCACCACGTTGCCGAGGGGGTTGGCTAGCTTCTTGTCGAGGCAGTCGGATAGCCGGAGGCGGCACAAGAAGTCACATGCGGCGTCGGATAAGAAGCATTCGAGGCAGAGTGAGAAGGCCCGGGGGTATAGCCTGTGGGCAGAGACAGAGGAGTACTTTAGACCAGTGACATTGTCTGATATCGAAGCCTTGGCTGAGGTGTCTGAGCTTAGTAAGGTAGCTGCCACTCAGTGTTTTTCGACTCCGGATAAGGGGAATATTCCTGAGCTGAATGGAAATGGAAATGTGGATGCGGGACTTGGTTCTGGTGAGGAGTGTGGTTGTGGTGGTAGTTCGAATGAGGTTAAGGAGGAGAATGTAGACGGTGGCAATGCTAATGAGGTTGCTGCCGGGGAGGACGGTGGGAATGCTACTGAGGTTGTTGGCAAGGATGAGAATGCTGATTGTGTAGTTGAGAAGGTTGGTGAGAAAGGCGGAAATGAAAATGGGGTTGTTGAAGAAGAGGTCAAGACGGAGCAGAATGTGCAGTCAATGGAAATTGATAGTGTTGCAGCTTGTGGTTTGCCTGAGGAGGAAAAACCAAGCTGTTCTGATTCGGATTCTCCCAATGGTGTTGAGTGGCTTTTAGGTTATAAAAACAAGACTTCTTTAGCAACTGAGCGTCCTTCAAAGAAGCGGAAGGTTCTCGGTGCTGATGCAGGGTTGGAGAAAGTCATAAATGCAGCTCCTTGTGATGGGAATCCTTCTTTATGCCATTTTTGCTGCAAGGGTGATATAGGAAATAAGTCGAATCGGTTGATTGTTTGTAGTTCTTGTAAGGTTGTGGTTCATCAGAAGTGCTACGGAGTGCTAGAAGATGCAGATGCTTCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGTTAGTAATTCAGTAAACCCATGTGTGCTTTGTTCGAAGCAGGGCGGTGCGATGAAGCCAGTTCTGAAGAATGGTGATAGTGGTGGTTCTCTGGAGTTTGCCCATCTGTTTTGCTGTCAATGGATGCCAGAGGCTTATATTGAGGATATGGAAAAGGTGGAACCCATCGTAAATGTTAAAGGAATACCGGAAGCCCGAAGAAAATTAATATGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCTTTCCATCCAATGTGTGCGAGAGAGGCAAGACAGAGAATGGAAATTTGGGCAAAATTTGGGGTCAATAATGTTGAATTAAAGGCTTTCTGCCCAAAGCACTCAGAAGTACCGAATAACAGCAATGCTGAACCAGTGGATCCTTCTGTGTACATCGACAAGAATTCAAATATCTCAGACAGCCCTCATGTGACATTGTCACCAAAAAAATCAAACAAGTCAAAAACTGGCAGAAGAAATGGTGATAATGTTGCAGTCACTATTGGGACTTCAGATAATTCCGATAAGGTCAGTGATAGCAGATCACAGGGCTTGCCAATGACTGATAGGGGGAAATTAGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGGCCCTTAATCTTACACCTATCTTACAGAAGCTGATTGATTGTGGAAAAGTTGATGTGAAGGATGTGGCATTGGAGATTGGCATCTCACCTGATTCTTTATCTGCATCACTTGCGGATGATAGTTTGGTGCCGGATGTGCAAAGCAGAATAGCTAAATGGCTTAAAGATAATACCTATTTGGATCTAATGCAGAAAAATTTTAAAACAAAATTAAGACCATCATTTTCATCCACGGTTGAGTTTGGAGGTTCTGATGCTCCATCAACAGAGTCTGGTATGTCGGATCCTGTAGCTGTTAAATCTGTACCCCCACGGAGAAGAACAAAAGGTGGTGTTAGGATTTTGAAGGATAACAAAGTTCTCAGATCATCAGACCAGACCTGTTGTGACAATGGGGTGTTGCATGACAAGACTAAATCAGACAAAATTACCAGTGGAGGACCAAAAAATTTGAAAGTCGAGTGCATCAGTTTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTCTTTGCCAACACATTCACCTGAAGGTTATTCAGTTAAGTCCTCAAATTGCAGCCTTTCACAAAGAGGTCAAGAAGTGGTGGCTACTATTCCTTCGCAGACTGACTTGGTGATTGCAAATGTAGATCCGTTGTTTTCAGTGGAAAAATCAGTTCCTGAAAGCAAGAAACCAGAGGGAGGTTCTAATGCCCAACTGCCCATCCAGAAGACATTATCACAGATGCAAAATGGGGTGCCTCCAAAGAACACAATTTATGGTTCAAGTGAAGGAGAAGTTTCTCGTGTGGAAGCATCTTCCCATGCAAGTGTTTGCTGTAATCACCAAAATATACATCCAAAATGTCATGATACCAACTGTAAATCTGATGAGATGGGTTTAGAACAGTTGGCTAAGGCTCATGAATTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAGCTCATCTATTATCAGCATAGGTTGCAAAACAATATAAGTGCGAGAAAGCATTATACAGATGTTTTGATGTGTAATGTCGCTAAGAGTCTGCCAAAAGAGATTGATGCAACTCGGAATCTGAAGTGGGATGCAGTGCTGGTTAACCAGTATCTTTGCGAGCTTAGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCCGTGTTAGCAGCTGCAACTGCTGCTGCGGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCCTTGATGAACCTGCGCATCAGGAGAATTTGGTGAAGCTGAGCAGCTTTAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCAAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAACACTCTGGTGCAGTTCATTCAGGCTCAGATATCTCTAAAGAACATCCTAGATTGTGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTACAAGAGAATCTACAGGCCCATGGTACTGTGAGTTATGTGAAGGCAAATCTACTGCCAATTTTTGGGAGAAAGAGCATTTAACTACAGAATGTGGTTTATGTGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCTTTTTGTGCTGAGTGGGTCTTTGAGTCAACGTTCAAAAGGGGACAAGTATCACCGATTGAGGGAATGGACACCGTTACAAAGGGCGTTGATTTCTGTTACATCTGCCGACGGAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGTCAACATTTCATCCCTCCTGTGGCAGAAGTTCAGATTTTTATATGAATGTAAAAGCTCTTGGTGGCAAGCAGCAACACAAGGCATACTGCGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTTTATACAATAAGGGCTGAACTGGAGAGGTTACGCCTTATTTGCGAAAGGATTATCAAACGGGAGAAAGTAAAGAGGGAATTACTTATTTGTTCACATGACCTTCTTGCCGTGAAAAGAGATCATGTCGCCAGTTCTGTGCTTGCTAACAGTCCTTTCTTGCTAGCGGATGCTAGTTCTGAATCAGCAACAACTTCTCTTAAAGCGCACACAGAGGATTACAGATCATGCAGTGATACATTCCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCAGTTAAGAACAGGACTAGAGTTCCTATAACTATTGATAACGACCAAAGGACAGATGATGACAGCTCCACATCCCAAAACCAGTTTACGCAGAATCTTTCGGAGAGGATGCAGTTTTCTGAGAAACAGATTCCTTTCAGATCATCTGTGGCATCTTGTAATCTTTTGGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCACGGTGAGATGTTTTCGAAGGAATTGGTGATGACATCAGATCAGGCATCGTTGAAAAATATGCAATTACCCAAAGGATATGCATATGTTCCTGCTGACCGCGTTCCAAATGAGAACCAGGTCAATCAGGATGCTTGTTCTGGGGAACAACCAGAGGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1482

Amino Acids

161.8

Weight (kDa)

7.27

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 349 - 382 8.2e-10 PHD-finger
zf-HC5HC2H_2 PF13832 393 - 511 2.1e-21 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 421 - 512 7.3e-19 PHD-like zinc-binding domain
PHD PF00628 1080 - 1123 1e-05 PHD-finger
PHD_2 PF13831 1091 - 1124 7.7e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1140 - 1246 8.7e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1161 - 1247 9e-13 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AatII GACGTC 1 cut(s) 216
Acc16I TGCGCA 1 cut(s) 3060
Acc36I ACCTGC 1 cut(s) 3064
AccB1I GGYRCC 2 cut(s) 1930, 2548
AccB7I CCANNNNNTGG 1 cut(s) 3393
AccBSI CCGCTC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 615
AccII CGCG 1 cut(s) 4380
AccIII TCCGGA 1 cut(s) 499
AclI AACGTT 1 cut(s) 3515
AclWI GGATC 6 cut(s) 1565, 1578, 1992, 2081, 2094, 2435
AcoI YGGCCR 3 cut(s) 48, 219, 3628
AcsI RAATTY 7 cut(s) 1476, 1487, 1594, 1999, 2251, 3070, 3599
AcuI CTGAAG 4 cut(s) 1244, 1686, 2358, 2903
AcyI GRCGYC 2 cut(s) 213, 338
AdeI CACNNNGTG 1 cut(s) 486
AfaI GTAC 7 cut(s) 410, 1542, 1583, 2109, 3331, 3356, 4072
AfiI CCNNNNNNNGG 7 cut(s) 506, 989, 2492, 3018, 3393, 3545, 3659
AgsI TTSAA 9 cut(s) 752, 924, 1508, 1599, 2149, 2257, 2577, 3520, 4333
AjnI CCWGG 1 cut(s) 4395
AjuI GAANNNNNNNTTGG 2 cut(s) 1462, 1494
AleI CACNNNNGTG 1 cut(s) 3189
Alw21I GWGCWC 2 cut(s) 2301, 2766
Alw26I GTCTC 6 cut(s) 220, 392, 2742, 2950, 3134, 3254
AlwI GGATC 6 cut(s) 1565, 1578, 1992, 2081, 2094, 2435
AlwNI CAGNNNCTG 3 cut(s) 1834, 2075, 2471
Ama87I CYCGRG 1 cut(s) 375
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 9 cut(s) 10, 48, 174, 219, 372, 1803, 2976, 3346, 3628
ApaI GGGCCC 1 cut(s) 1807
ApoI RAATTY 7 cut(s) 1476, 1487, 1594, 1999, 2251, 3070, 3599
AseI ATTAAT 1 cut(s) 1364
AspLEI GCGC 4 cut(s) 65, 1397, 3061, 4006
AspS9I GGNCC 8 cut(s) 253, 373, 1803, 1804, 2243, 3102, 3347, 3478
AsuC2I CCSGG 4 cut(s) 146, 376, 377, 646
AsuII TTCGAA 3 cut(s) 590, 1193, 4295
AsuNHI GCTAGC 2 cut(s) 281, 3961
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 4 cut(s) 253, 2243, 3102, 3478
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 1807
BalI TGGCCA 2 cut(s) 50, 3630
BamHI GGATCC 2 cut(s) 1570, 2086
BanI GGYRCC 2 cut(s) 1930, 2548
BanII GRGCYC 3 cut(s) 103, 1807, 2766
BauI CACGAG 1 cut(s) 2595
BbsI GAAGAC 2 cut(s) 216, 2528
Bbv12I GWGCWC 2 cut(s) 2301, 2766
BbvCI CCTCAGC 1 cut(s) 450
BceAI ACGGC 4 cut(s) 178, 2963, 2975, 3893
BciT130I CCWGG 1 cut(s) 4397
BciVI GTATCC 1 cut(s) 4250
BcnI CCSGG 4 cut(s) 146, 376, 377, 646
BcoDI GTCTC 6 cut(s) 220, 392, 2742, 2950, 3134, 3254
BfmI CTRYAG 5 cut(s) 2091, 3247, 3342, 3414, 4062
BfoI RGCGCY 1 cut(s) 1398
BfuAI ACCTGC 1 cut(s) 3064
BfuI GTATCC 1 cut(s) 4250
BlpI GCTNAGC 1 cut(s) 3083
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 5 cut(s) 146, 376, 377, 646, 4397
Bme18I GGWCC 4 cut(s) 253, 2243, 3102, 3478
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 8 cut(s) 253, 373, 1803, 1804, 2243, 3102, 3347, 3478
BmrFI CCNGG 5 cut(s) 146, 376, 377, 646, 4397
BmtI GCTAGC 2 cut(s) 285, 3965
BoxI GACNNNNGTC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 216, 2528
BpmI CTGGAG 3 cut(s) 1271, 2724, 3842
Bpu10I CCTNAGC 3 cut(s) 450, 519, 2706
Bpu1102I GCTNAGC 1 cut(s) 3083
Bpu14I TTCGAA 3 cut(s) 590, 1193, 4295
BpuEI CTTGAG 1 cut(s) 3764
BpuMI CCSGG 4 cut(s) 146, 376, 377, 646
BsaBI GATNNNNATC 3 cut(s) 993, 1883, 3321
BsaHI GRCGYC 2 cut(s) 213, 338
BsaWI WCCGGW 3 cut(s) 5, 499, 1345
Bsc4I CCNNNNNNNGG 7 cut(s) 506, 989, 2492, 3018, 3393, 3545, 3659
Bse118I RCCGGY 1 cut(s) 221
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 2 cut(s) 631, 1561
Bse8I GATNNNNATC 3 cut(s) 993, 1883, 3321
BseAI TCCGGA 1 cut(s) 499
BseBI CCWGG 1 cut(s) 4397
BseJI GATNNNNATC 3 cut(s) 993, 1883, 3321
BseLI CCNNNNNNNGG 7 cut(s) 506, 989, 2492, 3018, 3393, 3545, 3659
BseMI GCAATG 2 cut(s) 631, 1561
BseRI GAGGAG 7 cut(s) 86, 89, 419, 581, 620, 839, 1789
BseSI GKGCMC 1 cut(s) 1807
BseX3I CGGCCG 1 cut(s) 219
BsgI GTGCAG 3 cut(s) 800, 3213, 3640
Bsh1236I CGCG 1 cut(s) 4380
Bsh1285I CGRYCG 2 cut(s) 191, 222
BshFI GGCC 9 cut(s) 12, 50, 176, 221, 374, 1805, 2978, 3348, 3630
BshNI GGYRCC 2 cut(s) 1930, 2548
BsiEI CGRYCG 2 cut(s) 191, 222
BsiHKAI GWGCWC 2 cut(s) 2301, 2766
BsiHKCI CYCGRG 1 cut(s) 375
BslFI GGGAC 5 cut(s) 239, 564, 1711, 3146, 3540
BslI CCNNNNNNNGG 7 cut(s) 506, 989, 2492, 3018, 3393, 3545, 3659
BsmAI GTCTC 6 cut(s) 220, 392, 2742, 2950, 3134, 3254
BsmBI CGTCTC 3 cut(s) 220, 2950, 3254
BsmFI GGGAC 5 cut(s) 239, 564, 1711, 3146, 3540
BsmI GAATGC 3 cut(s) 352, 667, 697
BsnI GGCC 9 cut(s) 12, 50, 176, 221, 374, 1805, 2978, 3348, 3630
BsoBI CYCGRG 1 cut(s) 375
Bsp119I TTCGAA 3 cut(s) 590, 1193, 4295
Bsp120I GGGCCC 1 cut(s) 1803
Bsp1286I GDGCHC 4 cut(s) 103, 1807, 2301, 2766
Bsp13I TCCGGA 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 1581
Bsp1720I GCTNAGC 1 cut(s) 3083
Bsp19I CCATGG 1 cut(s) 3350
BspANI GGCC 9 cut(s) 12, 50, 176, 221, 374, 1805, 2978, 3348, 3630
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 1 cut(s) 4380
BspHI TCATGA 2 cut(s) 2659, 2713
BspMAI CTGCAG 1 cut(s) 3251
BspMI ACCTGC 1 cut(s) 3064
BspOI GCTAGC 2 cut(s) 285, 3965
BspPI GGATC 6 cut(s) 1565, 1578, 1992, 2081, 2094, 2435
BspT104I TTCGAA 3 cut(s) 590, 1193, 4295
BspT107I GGYRCC 2 cut(s) 1930, 2548
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 2 cut(s) 631, 1561
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 1581
BssAI RCCGGY 1 cut(s) 221
BssNI GRCGYC 2 cut(s) 213, 338
BssSI CACGAG 1 cut(s) 2595
BssT1I CCWWGG 3 cut(s) 444, 3149, 3350
Bst2BI CACGAG 1 cut(s) 2595
Bst2UI CCWGG 1 cut(s) 4397
Bst6I CTCTTC 2 cut(s) 750, 3019
BstACI GRCGYC 2 cut(s) 213, 338
BstAPI GCANNNNNTGC 5 cut(s) 778, 1913, 2785, 2999, 3618
BstAUI TGTACA 1 cut(s) 1581
BstBI TTCGAA 3 cut(s) 590, 1193, 4295
BstC8I GCNNGC 8 cut(s) 185, 283, 1423, 1745, 2921, 3707, 3942, 3963
BstDSI CCRYGG 5 cut(s) 66, 2034, 2114, 3128, 3350
BstENI CCTNNNNNAGG 1 cut(s) 3016
BstFNI CGCG 1 cut(s) 4380
BstH2I RGCGCY 1 cut(s) 1398
BstHHI GCGC 4 cut(s) 65, 1397, 3061, 4006
BstMAI GTCTC 6 cut(s) 220, 392, 2742, 2950, 3134, 3254
BstMCI CGRYCG 2 cut(s) 191, 222
BstNI CCWGG 1 cut(s) 4397
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 251
BstSCI CCNGG 5 cut(s) 144, 374, 375, 644, 4395
BstSFI CTRYAG 5 cut(s) 2091, 3247, 3342, 3414, 4062
BstSLI GKGCMC 1 cut(s) 1807
BstUI CGCG 1 cut(s) 4380
BstV2I GAAGAC 2 cut(s) 216, 2528
BstX2I RGATCY 4 cut(s) 1570, 1984, 2086, 2440
BstYI RGATCY 4 cut(s) 1570, 1984, 2086, 2440
BstZI CGGCCG 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 1 cut(s) 4250
BsuRI GGCC 9 cut(s) 12, 50, 176, 221, 374, 1805, 2978, 3348, 3630
BtgI CCRYGG 5 cut(s) 66, 2034, 2114, 3128, 3350
BtgZI GCGATG 1 cut(s) 1223
BtsI GCAGTG 2 cut(s) 2901, 4036
BtsIMutI CAGTG 9 cut(s) 426, 491, 1152, 1572, 1729, 2242, 2460, 2901, 4036
BveI ACCTGC 1 cut(s) 3064
Cac8I GCNNGC 8 cut(s) 185, 283, 1423, 1745, 2921, 3707, 3942, 3963
CaiI CAGNNNCTG 3 cut(s) 1834, 2075, 2471
CciI TCATGA 2 cut(s) 2659, 2713
CfoI GCGC 4 cut(s) 65, 1397, 3061, 4006
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 8 cut(s) 253, 373, 1803, 1804, 2243, 3102, 3347, 3478
Cfr9I CCCGGG 1 cut(s) 375
CseI GACGC 2 cut(s) 327, 905
CsiI ACCWGGT 1 cut(s) 4395
Csp6I GTAC 7 cut(s) 409, 1541, 1582, 2108, 3330, 3355, 4071
CviQI GTAC 7 cut(s) 409, 1541, 1582, 2108, 3330, 3355, 4071
DraI TTTAAA 1 cut(s) 2005
DraIII CACNNNGTG 1 cut(s) 486
EaeI YGGCCR 3 cut(s) 48, 219, 3628
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 750, 3019
EarI CTCTTC 2 cut(s) 750, 3019
EciI GGCGGA 1 cut(s) 744
Ecl136II GAGCTC 1 cut(s) 2764
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 444, 3149, 3350
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 3 cut(s) 103, 1807, 2766
Eco32I GATATC 3 cut(s) 436, 3214, 3244
Eco47I GGWCC 4 cut(s) 253, 2243, 3102, 3478
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 2764
Eco57I CTGAAG 4 cut(s) 1244, 1686, 2358, 2903
Eco81I CCTNAGG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 2764
EcoNI CCTNNNNNAGG 1 cut(s) 3016
EcoO109I RGGNCCY 2 cut(s) 1803, 1804
EcoRI GAATTC 1 cut(s) 1594
EcoRII CCWGG 1 cut(s) 4395
EcoRV GATATC 3 cut(s) 436, 3214, 3244
EcoT14I CCWWGG 3 cut(s) 444, 3149, 3350
EcoT22I ATGCAT 2 cut(s) 1798, 4363
EcoT38I GRGCYC 3 cut(s) 103, 1807, 2766
ErhI CCWWGG 3 cut(s) 444, 3149, 3350
Esp3I CGTCTC 3 cut(s) 220, 2950, 3254
FalI AAGNNNNNCTT 2 cut(s) 3030, 3062
FaqI GGGAC 5 cut(s) 239, 564, 1711, 3146, 3540
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 2 cut(s) 1376, 4363
FblI GTMKAC 1 cut(s) 615
FriOI GRGCYC 3 cut(s) 103, 1807, 2766
FspI TGCGCA 1 cut(s) 3060
GlaI GCGC 4 cut(s) 64, 1396, 3060, 4005
GsuI CTGGAG 3 cut(s) 1271, 2724, 3842
HaeII RGCGCY 1 cut(s) 1398
HaeIII GGCC 9 cut(s) 12, 50, 176, 221, 374, 1805, 2978, 3348, 3630
HgaI GACGC 2 cut(s) 327, 905
HhaI GCGC 4 cut(s) 65, 1397, 3061, 4006
Hin1I GRCGYC 2 cut(s) 213, 338
Hin6I GCGC 4 cut(s) 63, 1395, 3059, 4004
HinP1I GCGC 4 cut(s) 63, 1395, 3059, 4004
HincII GTYRAC 3 cut(s) 2905, 3513, 3642
HindII GTYRAC 3 cut(s) 2905, 3513, 3642
HpaI GTTAAC 1 cut(s) 2905
Hpy166II GTNNAC 9 cut(s) 616, 1174, 1582, 2905, 3310, 3513, 3642, 3893, 4164
Hpy8I GTNNAC 9 cut(s) 616, 1174, 1582, 2905, 3310, 3513, 3642, 3893, 4164
Hpy99I CGWCG 2 cut(s) 343, 3597
HpyCH4IV ACGT 4 cut(s) 213, 263, 3253, 3515
HpySE526I ACGT 4 cut(s) 213, 263, 3253, 3515
Hsp92I GRCGYC 2 cut(s) 213, 338
HspAI GCGC 4 cut(s) 63, 1395, 3059, 4004
Kpn2I TCCGGA 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 2905
LmnI GCTCC 6 cut(s) 106, 769, 985, 1776, 2065, 4148
MabI ACCWGGT 1 cut(s) 4395
MaeII ACGT 4 cut(s) 213, 263, 3253, 3515
MbiI CCGCTC 1 cut(s) 187
MflI RGATCY 4 cut(s) 1570, 1984, 2086, 2440
MhlI GDGCHC 4 cut(s) 103, 1807, 2301, 2766
MlsI TGGCCA 2 cut(s) 50, 3630
MluNI TGGCCA 2 cut(s) 50, 3630
MlyI GAGTC 5 cut(s) 115, 490, 2081, 2857, 3518
MmeI TCCRAC 4 cut(s) 282, 321, 939, 2064
Mox20I TGGCCA 2 cut(s) 50, 3630
Mph1103I ATGCAT 2 cut(s) 1798, 4363
MroI TCCGGA 1 cut(s) 499
MscI TGGCCA 2 cut(s) 50, 3630
MslI CAYNNNNRTG 3 cut(s) 1129, 2619, 3189
Msp20I TGGCCA 2 cut(s) 50, 3630
MspA1I CMGCKG 1 cut(s) 2990
MspR9I CCNGG 5 cut(s) 146, 376, 377, 646, 4397
Mva1269I GAATGC 3 cut(s) 352, 667, 697
MvaI CCWGG 1 cut(s) 4397
MvnI CGCG 1 cut(s) 4380
NciI CCSGG 4 cut(s) 146, 376, 377, 646
NcoI CCATGG 1 cut(s) 3350
NdeI CATATG 2 cut(s) 1376, 4363
NheI GCTAGC 2 cut(s) 281, 3961
NmeAIII GCCGAG 2 cut(s) 197, 294
NmuCI GTSAC 8 cut(s) 17, 327, 421, 1621, 1629, 1687, 2189, 4057
NsbI TGCGCA 1 cut(s) 3060
NsiI ATGCAT 2 cut(s) 1798, 4363
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 3 cut(s) 590, 1193, 4295
OliI CACNNNNGTG 1 cut(s) 3189
PagI TCATGA 2 cut(s) 2659, 2713
PceI AGGCCT 1 cut(s) 176
PctI GAATGC 3 cut(s) 352, 667, 697
PflFI GACNNNGTC 2 cut(s) 427, 1627
PflMI CCANNNNNTGG 1 cut(s) 3393
PleI GAGTC 5 cut(s) 115, 490, 2080, 2856, 3517
PpsI GAGTC 5 cut(s) 115, 490, 2080, 2856, 3517
PshAI GACNNNNGTC 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 1364
PsiI TTATAA 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 2766
Psp1406I AACGTT 1 cut(s) 3515
Psp6I CCWGG 1 cut(s) 4395
PspGI CCWGG 1 cut(s) 4395
PspOMI GGGCCC 1 cut(s) 1803
PspPI GGNCC 8 cut(s) 253, 373, 1803, 1804, 2243, 3102, 3347, 3478
PstI CTGCAG 1 cut(s) 3251
PstNI CAGNNNCTG 3 cut(s) 1834, 2075, 2471
PsuI RGATCY 4 cut(s) 1570, 1984, 2086, 2440
PsyI GACNNNGTC 2 cut(s) 427, 1627
PvuII CAGCTG 1 cut(s) 2990
RsaI GTAC 7 cut(s) 410, 1542, 1583, 2109, 3331, 3356, 4072
RsaNI GTAC 7 cut(s) 409, 1541, 1582, 2108, 3330, 3355, 4071
RseI CAYNNNNRTG 3 cut(s) 1129, 2619, 3189
SacI GAGCTC 1 cut(s) 2766
Sau96I GGNCC 8 cut(s) 253, 373, 1803, 1804, 2243, 3102, 3347, 3478
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 5 cut(s) 115, 490, 2081, 2857, 3518
ScrFI CCNGG 5 cut(s) 146, 376, 377, 646, 4397
SduI GDGCHC 4 cut(s) 103, 1807, 2301, 2766
SexAI ACCWGGT 1 cut(s) 4395
SfcI CTRYAG 5 cut(s) 2091, 3247, 3342, 3414, 4062
SfuI TTCGAA 3 cut(s) 590, 1193, 4295
SinI GGWCC 4 cut(s) 253, 2243, 3102, 3478
SmaI CCCGGG 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 1129, 2619, 3189
SmlI CTYRAG 1 cut(s) 3743
SmoI CTYRAG 1 cut(s) 3743
SseBI AGGCCT 1 cut(s) 176
SspI AATATT 1 cut(s) 514
SstI GAGCTC 1 cut(s) 2766
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 5 cut(s) 144, 374, 375, 644, 4395
StyI CCWWGG 3 cut(s) 444, 3149, 3350
TaiI ACGT 4 cut(s) 216, 266, 3256, 3518
TatI WGTACW 4 cut(s) 408, 1581, 3329, 4070
TauI GCSGC 6 cut(s) 231, 234, 237, 319, 338, 3008
TscAI CASTG 9 cut(s) 426, 491, 1159, 1572, 1729, 2242, 2460, 2901, 4036
TseFI GTSAC 8 cut(s) 17, 327, 421, 1621, 1629, 1687, 2189, 4057
Tsp45I GTSAC 8 cut(s) 17, 327, 421, 1621, 1629, 1687, 2189, 4057
TspGWI ACGGA 7 cut(s) 83, 93, 782, 1113, 2131, 2433, 3610
TspMI CCCGGG 1 cut(s) 375
TspRI CASTG 9 cut(s) 426, 491, 1159, 1572, 1729, 2242, 2460, 2901, 4036
Tth111I GACNNNGTC 2 cut(s) 427, 1627
Van91I CCANNNNNTGG 1 cut(s) 3393
VpaK11BI GGWCC 4 cut(s) 253, 2243, 3102, 3478
VspI ATTAAT 1 cut(s) 1364
XagI CCTNNNNNAGG 1 cut(s) 3016
XapI RAATTY 7 cut(s) 1476, 1487, 1594, 1999, 2251, 3070, 3599
XbaI TCTAGA 1 cut(s) 2728
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmaI CCCGGG 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 615
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 410
Zsp2I ATGCAT 2 cut(s) 1798, 4363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.