Rroxscaffold_3G00219430

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004120
Physical Location & Seq
Forward (+)
1549685 .. 1559238
9554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219430.1

Sequence Viewer

Length: 4524 bp
ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAAGCCTTGCCCGATTTCTAGGGTTCCGCCCAAGATTCCGGCGACTCTGCCGGAAATTCCTAAAAAGTCGGTTGGGGTTGATTTGTATTCTCAGGCCAGGAAGGCCTTGTGTGAGCGGTCGCCGTTTGATGTGGTTGAGGACGCCTCGGTCTCAGCCTCAGCTGCTGCTGCTGCTCCTTCTTCTTCCTCGGGTGTGGTCCCCACCACCTTGCCGAGGGGGTTGGCTAACTTCTTGTCCAGGCAATCTGATAGCCGAAAGCGGCACAAGAAGTCGCATTCGGCGTCGGATAAGAAGCATTCCCGGCAGAGTGAGAAGTTGAAGGGGTATAGTGTGTGGGCAGAGACAGAGGAGTACTTTAGACCCTTGACATTGCCTGATATTGAAGCCTTAGCTGAGGTATCTGAGCTTAGTAAGGTAGCTGCTACAAAGTGTTTTTCGATTCCGAATTTGGGAAATATTCCCGAGCTGAATGGAAATGAAAATGTGAATGTGGGACTTGTTTTCAGTGAGGAGTGTGTTTGTGGTCGTAATTCGAATGAGACTGTAAACGGTGGCAATGCTAATGAGGTTGCTGCCGAGGATGATGGTGGGAATGCTAGTGAGGTTGTTTGCAAGGATGAGATTGTGAATGGCGGGAATGCTAGTGAGGTTGATGTCAAGGATGAGAATGCAGATGATGGGAGTGGCAATTCGGATGTCGTTGAAAGGGTTAATGAGAATGACGGAAATGAAAATGGGGCTGTGGAAGAGGAGGACAAGACGGAGCAGAATGGGCAGTCGATGGAAATTGATAGTGGTTTGCCTGAAGAGGAAAAAAAAAGCTGTACTGTTTCGGATTCTCCCAGGGGTATTGAGTGGCTTTTAGGTTATAGAAACAAGACTTCTTTAGCGACAGAGCGCCCTTCAAAGAAGCGAAAGGTTCTTGGTGCTGATGCAGGGTTGGAGAAAGTCTTAAGTGCTTCTCCTTGTGATGGGAAGCCATCTTTATGCCATTTTTGCTGCAAGGGTGATGCAGGAAAAGAGTCAAACCAATTGATTGTTTGTAGTTCTTGTAAGGTCGTGGTTCATCAGAAGTGCTATGGAGTGCTAGAAGACGTAGATGCGTCATGGTTATGCTCTTGGTGTAAGCACAACACTGGTGATAGTAATTCAGCAAACCCTTGTGTGCTTTGCTCTAAGCAGGGTGGTGCTTTGAAGCCAGTTCTGAAGAATGGTAATAGTGGTGGATCTCCAGAGTTTGCCCACTTGTTTTGCTGTCAGTGGATGCCAGAGGTTTATATAGAGGATATGGAGAAGGTGGAACCCATCATGAATGTCGGAGGAATACCGGAAACCCGCCGAAAGCTAATTTGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGTGCTTGCAGAACTTCCTTCCATCCAATGTGTGCGAGAGAGGCAAGACAAAGAATGGAAATTTGGGCAAAATATGGGCTCAATAATGTTGAATTGAAGGCTTTCTGCTCAAAGCATTCAGAAGTACCAAATAACAGCAACACTGAACCAGAGGATCCTTCTGTCTCCATTGACAAGAATTCAAATATCTCTGACAGTTCTCATGTGACATCGTCACCAAAAAAATTAAACAAGTTGAAAATTGGTGGTAGAAATGGTGATAATGTTGCAGTCAGTGTTGAGACTTCAGATAATTCTGATAAATTCAGTGATAGCAGATCACAGGAGATACCAATGAATGATAGGGGTAAATTTGAGAGGAGCTGTGAGGATGTCAATGCATCTGGGAACCTTAACCTTACCCCTATTTTACAGAAGCTGATTGATTGTGGAAAAGTTGACGTGAAGGATGTGGCGTTGGAGATTGGCGTCTCACCCGATTCTTTATCTGCATCACTTGCTGATGATAGCGTGGTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATACCTACTTGGATCTAATGCAGAAAAATGTAAAAACAAAATTAAGACCGTCATTTGCATCATTGGCTGAGTTTGGAGGTTCTGATGCTCCATTATCAGAGTCTGGTATGTCAGATCCTGTAGCTGTTAAATCAGTACCCCCACGGAGGAGAACAAAAGGTGGTGTTAGGATTTTAAAGGACAACAAAGTTCTTAGCTCATCAGAGCAGGCCTTTTGTGACAATGGGATTTCTCTGGACAAGATTAAATTAGATAAAACTATCAGTGAAGGACCAAAAGATTTGAAAGAAGAGTCCATCAGTGATGTTGTTGAGAAGAATATGACGGTGCTCAATGGGTTACAAGATTTTTTGCCGACACATTCACCTGAAATGGAAGGTTATTCAACTAAGCCCTTAAATTGCAGCCTTTTGCAAAAAGGTCAAGAAGTGGTGACTATTACTCCTTTGCAGACCAACTCGGTGATTGCAAATGTAGATCCATCTTTTTCAGTTGAAAAACCAGTTCCTGAAAGCAAGAAATCAGGGGCAGAAGCTCCTAGTTCTTATGTCCAGCTGCCTATGCAGAAGACATTATCACAGATGCAGAATGGTGTGTCTCTAAAGAATCCAATACATGGTTCAAGTCAAGGAGAAGTCTCTCGTGTGGAGGCATCTTCCCATGCAAGTGTTTGCTGTAATCATCAAAATACACATCCAAAATGTTATGATACGATTTGTAAAACTGACGAGAGGAATTTGGAACAGTTGGCTAAGGCTCGTAAACTGGGAGTTCTAGAAATGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTATCAGCATAGGTTGCAAAACAATATAACTGCGAGAAAGCATTATACTGATGTTTTGATACGTAATGTTGCTAAGAGTCTGCCGAAAGAGATCGATGCAGCACGGAATCAGAAGTGGGATGCTGTGCTGGTTAACCAATATCTTTGCGAGCTTCGAGAGGCAAAGAAGCAAGGTAGGAAGGAGAGACGGCATAAGGAAGCACAGGCTGTTTTAGCAGCTGCAACTGCTGCAGCTGCTGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCGTTGATGAACACCCCCATCAGGAGAATGTGGCGAAGCTGAGCACTTTCAGTGGGAGGTCCAGCTTTTCCTCACAGATGATACCACGGGCAAAAGAGACATTTCCCAGGGTGGCTGTCCCTAGAGTTTCTGTGGAAAAGCACTCTGGTGCAGTTAATTCAGGCTCAGATATCTCTAAAGAACATCCTAGGTCATGTGATATCTGCAGACGTTCTGAGACGATGTTAAACCCGATTTTAGTCTGTTCCAGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGCAAGAGAATCTACAGGTCCATGGTACTGTGAATTATGTGAAGACAAAGCTACTGCCAATGTTTGGGAGAGAGAGCATTTAACTGCAGAATGTGGTTTATGCGGTGGGAAAACTGGTGCTTTTAGGAAATCCTCTGATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGGTCTTTGAGTCAACATTCAAAAGGGGACAAGTATCACTGATTGATGGAATGGACACAGTTTCAAAGGGCCTTGATTTCTGTTATATCTGCCGACGCAAATTTGGTGTCTGCATAAAGTGCAGCTATGGCCATTGTCAGGCAACATTTCATCCCTCCTGTGGTAGAAGTTCTGACTTTTATATGAGTGTAAAAACTCTCGGTGGCAAGCAGCAACACAAGGCATACTGTGAGAGGCATAGCCTTGAGCAGAGGGCGAAGGCTGATACACAAAAACATGGAATGGAGGAATTAAAGAACCTCTATACAATAAGGGCTGAGCTGGAGAGATTACGCCTTATTTGCGAAAGAATTATCAAACGGGAAAAAGTAAAGAGGGAATTACTCATTTGTTCACATGACCTTCTCGCTGTGAAAAGAGATCATGTTGCCCGTTCCGTGCTTGTTAACAGTCCTTTCTTGCTACCGGATGCTAGTTCTGAATCAGCAACGACTTCTCTTAAAGCGCAGACGGATGATTACAGATCATGCAGTGAGACATTCCAAAGATCAGATGATGTGACTGTAGATAGTACAATTTCTGTTAGGCACAGGACTAGAGTTCCTATAACTATTGATAACGACCAAAGGACAGATGATGACAGCTCCACATCCCAAAATCAATTTACCCACAATCTTTCTGATAGGATGCAATTTTCTGAGAAACAGATTCCATTCAGACCTTCTGCCGCGACTTGTAATCTTTCAGAAGATGGTGGATACAGGTCAAAATCTAAGAAGCATGCCGAGATGTTTTCGAAAGAACTGGTGATGACATCAGATCAGGCATCAGTGAAAAATATGCTATTACCCAAAGGATATGCATATGTACCTGCTGATTGCATTCCAAATGAGAAGCAGGCCAACCAGGATACTTGTTCTGGTGAACGACCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1507

Amino Acids

165.45

Weight (kDa)

6.86

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 369 - 402 1e-09 PHD-finger
zf-HC5HC2H_2 PF13832 413 - 531 2.8e-22 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 441 - 532 2.9e-19 PHD-like zinc-binding domain
PHD_2 PF13831 1117 - 1150 9.8e-10 PHD-finger
zf-HC5HC2H_2 PF13832 1166 - 1272 1.2e-18 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1187 - 1273 4.1e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 4456
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 2 cut(s) 2648, 3471
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 4307
AciI CCGC 9 cut(s) 53, 66, 104, 193, 337, 711, 1414, 3510, 4305
AclWI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
AcoI YGGCCR 1 cut(s) 3706
AcsI RAATTY 8 cut(s) 132, 523, 1536, 1654, 1778, 1826, 2767, 3677
AcuI CTGAAG 3 cut(s) 903, 1304, 1746
AcyI GRCGYC 3 cut(s) 219, 359, 1944
AfaI GTAC 7 cut(s) 431, 904, 1602, 2169, 3434, 4150, 4446
AflII CTTAAG 1 cut(s) 1030
AjiI CACGTC 1 cut(s) 1918
AjnI CCWGG 5 cut(s) 173, 314, 920, 3227, 4482
AjuI GAANNNNNNNTTGG 4 cut(s) 1522, 1554, 2635, 2667
AleI CACNNNNGTG 1 cut(s) 3267
Alw21I GWGCWC 2 cut(s) 2364, 3167
AlwI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
AlwNI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
Ama87I CYCGRG 2 cut(s) 265, 539
AoxI GGCC 7 cut(s) 10, 171, 180, 2241, 3646, 3706, 4476
ApoI RAATTY 8 cut(s) 132, 523, 1536, 1654, 1778, 1826, 2767, 3677
ArsI GACNNNNNNTTYG 2 cut(s) 3669, 3701
Asp700I GAANNNNTTC 1 cut(s) 1577
AspA2I CCTAGG 1 cut(s) 3308
AspLEI GCGC 3 cut(s) 978, 1457, 4084
AspS9I GGNCC 7 cut(s) 274, 1990, 2303, 3180, 3425, 3556, 3646
AsuC2I CCSGG 1 cut(s) 379
AsuII TTCGAA 2 cut(s) 611, 4373
AvaI CYCGRG 2 cut(s) 265, 539
AvaII GGWCC 6 cut(s) 274, 1990, 2303, 3180, 3425, 3556
AvrII CCTAGG 1 cut(s) 3308
BalI TGGCCA 1 cut(s) 3708
BamHI GGATCC 1 cut(s) 1630
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 1557
BauI CACGAG 1 cut(s) 2673
BbsI GAAGAC 3 cut(s) 1176, 2606, 3456
Bbv12I GWGCWC 2 cut(s) 2364, 3167
BbvCI CCTCAGC 2 cut(s) 235, 471
BceAI ACGGC 2 cut(s) 184, 3053
BciT130I CCWGG 5 cut(s) 175, 316, 922, 3229, 4484
BciVI GTATCC 2 cut(s) 4328, 4480
BcnI CCSGG 1 cut(s) 379
BfmI CTRYAG 6 cut(s) 2151, 3078, 3325, 3420, 3492, 4140
BfoI RGCGCY 2 cut(s) 979, 1458
BfrI CTTAAG 1 cut(s) 1030
BfuAI ACCTGC 1 cut(s) 4456
BfuI GTATCC 2 cut(s) 4328, 4480
BglI GCCNNNNNGGC 1 cut(s) 179
BlnI CCTAGG 1 cut(s) 3308
BlpI GCTNAGC 2 cut(s) 3161, 3894
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 6 cut(s) 175, 316, 379, 922, 3229, 4484
Bme18I GGWCC 6 cut(s) 274, 1990, 2303, 3180, 3425, 3556
BmeT110I CYCGRG 2 cut(s) 265, 539
BmgBI CACGTC 1 cut(s) 1918
BmgT120I GGNCC 7 cut(s) 274, 1990, 2303, 3180, 3425, 3556, 3646
BmiI GGNNCC 8 cut(s) 70, 102, 276, 1380, 1632, 1865, 1992, 3557
BmrFI CCNGG 6 cut(s) 175, 316, 379, 922, 3229, 4484
BmrI ACTGGG 1 cut(s) 2807
BmuI ACTGGG 1 cut(s) 2807
BpiI GAAGAC 3 cut(s) 1176, 2606, 3456
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 3 cut(s) 1293, 2802, 3920
Bpu10I CCTNAGC 4 cut(s) 235, 466, 471, 2784
Bpu1102I GCTNAGC 2 cut(s) 3161, 3894
Bpu14I TTCGAA 2 cut(s) 611, 4373
BpuEI CTTGAG 1 cut(s) 3842
BpuMI CCSGG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 2943
BsaAI YACGTR 1 cut(s) 2912
BsaBI GATNNNNATC 1 cut(s) 3399
BsaHI GRCGYC 3 cut(s) 219, 359, 1944
BsaI GGTCTC 1 cut(s) 232
BsaWI WCCGGW 3 cut(s) 5, 1405, 4042
BsaXI ACNNNNNCTCC 2 cut(s) 2458, 2488
Bse1I ACTGG 7 cut(s) 1219, 1277, 2534, 2802, 3369, 3526, 4386
Bse3DI GCAATG 3 cut(s) 446, 640, 2009
Bse8I GATNNNNATC 1 cut(s) 3399
BseBI CCWGG 5 cut(s) 175, 316, 922, 3229, 4484
BseCI ATCGAT 1 cut(s) 2943
BseJI GATNNNNATC 1 cut(s) 3399
BseMI GCAATG 3 cut(s) 446, 640, 2009
BseNI ACTGG 7 cut(s) 1219, 1277, 2534, 2802, 3369, 3526, 4386
BseRI GAGGAG 6 cut(s) 89, 440, 602, 842, 1849, 2194
BsgI GTGCAG 2 cut(s) 3291, 3718
Bsh1236I CGCG 1 cut(s) 4307
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 7 cut(s) 12, 173, 182, 2243, 3648, 3708, 4478
BshNI GGYRCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 2943
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 2364, 3167
BsiHKCI CYCGRG 2 cut(s) 265, 539
BsiSI CCGG 6 cut(s) 6, 116, 128, 379, 1406, 4043
BslFI GGGAC 5 cut(s) 260, 585, 1976, 3224, 3618
BsmBI CGTCTC 3 cut(s) 1951, 3028, 3332
BsmFI GGGAC 5 cut(s) 260, 585, 1976, 3224, 3618
BsmI GAATGC 7 cut(s) 352, 373, 676, 721, 751, 1591, 4458
BsnI GGCC 7 cut(s) 12, 173, 182, 2243, 3648, 3708, 4478
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 2 cut(s) 265, 539
Bsp119I TTCGAA 2 cut(s) 611, 4373
Bsp1286I GDGCHC 3 cut(s) 1557, 2364, 3167
Bsp1720I GCTNAGC 2 cut(s) 3161, 3894
Bsp19I CCATGG 1 cut(s) 3428
BspACI CCGC 9 cut(s) 53, 66, 104, 193, 337, 711, 1414, 3510, 4305
BspANI GGCC 7 cut(s) 12, 173, 182, 2243, 3648, 3708, 4478
BspDI ATCGAT 1 cut(s) 2943
BspFNI CGCG 1 cut(s) 4307
BspHI TCATGA 1 cut(s) 1386
BspLI GGNNCC 8 cut(s) 70, 102, 276, 1380, 1632, 1865, 1992, 3557
BspMAI CTGCAG 3 cut(s) 3082, 3329, 3496
BspMI ACCTGC 1 cut(s) 4456
BspPI GGATC 6 cut(s) 1312, 1625, 1638, 2052, 2141, 2504
BspT104I TTCGAA 2 cut(s) 611, 4373
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 1030
BspTNI GGTCTC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 3 cut(s) 446, 640, 2009
BsrI ACTGG 7 cut(s) 1219, 1277, 2534, 2802, 3369, 3526, 4386
BssNI GRCGYC 3 cut(s) 219, 359, 1944
BssSI CACGAG 1 cut(s) 2673
BssT1I CCWWGG 2 cut(s) 3308, 3428
Bst2BI CACGAG 1 cut(s) 2673
Bst2UI CCWGG 5 cut(s) 175, 316, 922, 3229, 4484
Bst6I CTCTTC 4 cut(s) 819, 879, 2316, 3097
BstACI GRCGYC 3 cut(s) 219, 359, 1944
BstAFI CTTAAG 1 cut(s) 1030
BstAPI GCANNNNNTGC 5 cut(s) 1973, 2863, 3077, 3086, 3696
BstBAI YACGTR 1 cut(s) 2912
BstBI TTCGAA 2 cut(s) 611, 4373
BstC8I GCNNGC 6 cut(s) 1483, 2241, 2999, 3785, 4359, 4476
BstDSI CCRYGG 3 cut(s) 2174, 3206, 3428
BstENI CCTNNNNNAGG 2 cut(s) 289, 3094
BstFNI CGCG 1 cut(s) 4307
BstH2I RGCGCY 2 cut(s) 979, 1458
BstHHI GCGC 3 cut(s) 978, 1457, 4084
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 5 cut(s) 175, 316, 922, 3229, 4484
BstNSI RCATGY 1 cut(s) 4361
BstSCI CCNGG 6 cut(s) 173, 314, 377, 920, 3227, 4482
BstSFI CTRYAG 6 cut(s) 2151, 3078, 3325, 3420, 3492, 4140
BstSNI TACGTA 1 cut(s) 2912
BstUI CGCG 1 cut(s) 4307
BstV2I GAAGAC 3 cut(s) 1176, 2606, 3456
BstX2I RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
BstYI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
Bsu15I ATCGAT 1 cut(s) 2943
BsuI GTATCC 2 cut(s) 4328, 4480
BsuRI GGCC 7 cut(s) 12, 173, 182, 2243, 3648, 3708, 4478
BsuTUI ATCGAT 1 cut(s) 2943
BtgI CCRYGG 3 cut(s) 2174, 3206, 3428
BtrI CACGTC 1 cut(s) 1918
BtsI GCAGTG 1 cut(s) 4114
BveI ACCTGC 1 cut(s) 4456
Cac8I GCNNGC 6 cut(s) 1483, 2241, 2999, 3785, 4359, 4476
CaiI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
CciI TCATGA 1 cut(s) 1386
CfoI GCGC 3 cut(s) 978, 1457, 4084
Cfr13I GGNCC 7 cut(s) 274, 1990, 2303, 3180, 3425, 3556, 3646
ClaI ATCGAT 1 cut(s) 2943
CseI GACGC 5 cut(s) 227, 348, 1170, 1933, 3681
Csp6I GTAC 7 cut(s) 430, 903, 1601, 2168, 3433, 4149, 4445
CspCI CAANNNNNGTGG 2 cut(s) 1310, 1345
CviQI GTAC 7 cut(s) 430, 903, 1601, 2168, 3433, 4149, 4445
DraI TTTAAA 1 cut(s) 2208
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 3706
Eam1104I CTCTTC 4 cut(s) 819, 879, 2316, 3097
EarI CTCTTC 4 cut(s) 819, 879, 2316, 3097
EciI GGCGGA 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 2912
Eco130I CCWWGG 2 cut(s) 3308, 3428
Eco147I AGGCCT 2 cut(s) 182, 2243
Eco24I GRGCYC 1 cut(s) 1557
Eco31I GGTCTC 1 cut(s) 232
Eco32I GATATC 2 cut(s) 3292, 3322
Eco47I GGWCC 6 cut(s) 274, 1990, 2303, 3180, 3425, 3556
Eco57I CTGAAG 3 cut(s) 903, 1304, 1746
Eco88I CYCGRG 2 cut(s) 265, 539
EcoNI CCTNNNNNAGG 2 cut(s) 289, 3094
EcoO109I RGGNCCY 1 cut(s) 3646
EcoRI GAATTC 1 cut(s) 1654
EcoRII CCWGG 5 cut(s) 173, 314, 920, 3227, 4482
EcoRV GATATC 2 cut(s) 3292, 3322
EcoT14I CCWWGG 2 cut(s) 3308, 3428
EcoT22I ATGCAT 2 cut(s) 1858, 4441
EcoT38I GRGCYC 1 cut(s) 1557
ErhI CCWWGG 2 cut(s) 3308, 3428
Esp3I CGTCTC 3 cut(s) 1951, 3028, 3332
FaqI GGGAC 5 cut(s) 260, 585, 1976, 3224, 3618
FauI CCCGC 2 cut(s) 704, 1421
FauNDI CATATG 2 cut(s) 1436, 4441
FriOI GRGCYC 1 cut(s) 1557
GlaI GCGC 3 cut(s) 977, 1456, 4083
GsuI CTGGAG 3 cut(s) 1293, 2802, 3920
HaeII RGCGCY 2 cut(s) 979, 1458
HaeIII GGCC 7 cut(s) 12, 173, 182, 2243, 3648, 3708, 4478
HapII CCGG 6 cut(s) 6, 116, 128, 379, 1406, 4043
HgaI GACGC 5 cut(s) 227, 348, 1170, 1933, 3681
HhaI GCGC 3 cut(s) 978, 1457, 4084
Hin1I GRCGYC 3 cut(s) 219, 359, 1944
Hin6I GCGC 3 cut(s) 976, 1455, 4082
HinP1I GCGC 3 cut(s) 976, 1455, 4082
HincII GTYRAC 4 cut(s) 1915, 2983, 3591, 4024
HindII GTYRAC 4 cut(s) 1915, 2983, 3591, 4024
HpaI GTTAAC 2 cut(s) 2983, 4024
HpaII CCGG 6 cut(s) 6, 116, 128, 379, 1406, 4043
Hpy166II GTNNAC 9 cut(s) 625, 1915, 2795, 2983, 3388, 3591, 3971, 4024, 4502
Hpy8I GTNNAC 9 cut(s) 625, 1915, 2795, 2983, 3388, 3591, 3971, 4024, 4502
Hpy99I CGWCG 2 cut(s) 364, 3675
HpyCH4IV ACGT 4 cut(s) 1173, 1917, 2911, 3331
HpySE526I ACGT 4 cut(s) 1173, 1917, 2911, 3331
Hsp92I GRCGYC 3 cut(s) 219, 359, 1944
HspAI GCGC 3 cut(s) 976, 1455, 4082
KspAI GTTAAC 2 cut(s) 2983, 4024
LmnI GCTCC 6 cut(s) 256, 841, 1836, 2125, 2572, 4226
MaeII ACGT 4 cut(s) 1173, 1917, 2911, 3331
MaeIII GTNAC 8 cut(s) 17, 1430, 1681, 1689, 2249, 2370, 2464, 4135
MbiI CCGCTC 1 cut(s) 193
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
MhlI GDGCHC 3 cut(s) 1557, 2364, 3167
MlsI TGGCCA 1 cut(s) 3708
MluNI TGGCCA 1 cut(s) 3708
MlyI GAGTC 6 cut(s) 115, 1109, 2141, 2333, 2935, 3596
MmeI TCCRAC 4 cut(s) 342, 999, 1375, 1914
Mox20I TGGCCA 1 cut(s) 3708
Mph1103I ATGCAT 2 cut(s) 1858, 4441
MroXI GAANNNNTTC 1 cut(s) 1577
MscI TGGCCA 1 cut(s) 3708
MslI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
Msp20I TGGCCA 1 cut(s) 3708
MspA1I CMGCKG 4 cut(s) 239, 2587, 3068, 3083
MspCI CTTAAG 1 cut(s) 1030
MspI CCGG 6 cut(s) 6, 116, 128, 379, 1406, 4043
MspR9I CCNGG 6 cut(s) 175, 316, 379, 922, 3229, 4484
MunI CAATTG 1 cut(s) 1109
Mva1269I GAATGC 7 cut(s) 352, 373, 676, 721, 751, 1591, 4458
MvaI CCWGG 5 cut(s) 175, 316, 922, 3229, 4484
MvnI CGCG 1 cut(s) 4307
NciI CCSGG 1 cut(s) 379
NcoI CCATGG 1 cut(s) 3428
NdeI CATATG 2 cut(s) 1436, 4441
NlaIV GGNNCC 8 cut(s) 70, 102, 276, 1380, 1632, 1865, 1992, 3557
NmeAIII GCCGAG 3 cut(s) 315, 679, 4387
NmuCI GTSAC 6 cut(s) 17, 1681, 1689, 2249, 2464, 4135
NsiI ATGCAT 2 cut(s) 1858, 4441
NspI RCATGY 1 cut(s) 4361
NspV TTCGAA 2 cut(s) 611, 4373
OliI CACNNNNGTG 1 cut(s) 3267
PaeI GCATGC 1 cut(s) 4361
PagI TCATGA 1 cut(s) 1386
PasI CCCWGGG 2 cut(s) 921, 3228
PceI AGGCCT 2 cut(s) 182, 2243
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PctI GAATGC 7 cut(s) 352, 373, 676, 721, 751, 1591, 4458
PdmI GAANNNNTTC 1 cut(s) 1577
PfeI GAWTC 9 cut(s) 112, 517, 914, 1955, 2638, 2956, 3416, 4058, 4285
PflFI GACNNNGTC 1 cut(s) 1687
PflMI CCANNNNNTGG 2 cut(s) 2648, 3471
PleI GAGTC 6 cut(s) 115, 1108, 2140, 2332, 2934, 3595
PpsI GAGTC 6 cut(s) 115, 1108, 2140, 2332, 2934, 3595
Ppu21I YACGTR 1 cut(s) 2912
Psp6I CCWGG 5 cut(s) 173, 314, 920, 3227, 4482
PspGI CCWGG 5 cut(s) 173, 314, 920, 3227, 4482
PspN4I GGNNCC 8 cut(s) 70, 102, 276, 1380, 1632, 1865, 1992, 3557
PspPI GGNCC 7 cut(s) 274, 1990, 2303, 3180, 3425, 3556, 3646
PstI CTGCAG 3 cut(s) 3082, 3329, 3496
PstNI CAGNNNCTG 6 cut(s) 242, 1894, 2135, 2150, 2540, 3086
PsuI RGATCY 5 cut(s) 1304, 1630, 2044, 2146, 2509
PsyI GACNNNGTC 1 cut(s) 1687
PvuII CAGCTG 4 cut(s) 239, 2587, 3068, 3083
RsaI GTAC 7 cut(s) 431, 904, 1602, 2169, 3434, 4150, 4446
RsaNI GTAC 7 cut(s) 430, 903, 1601, 2168, 3433, 4149, 4445
RseI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
Sau96I GGNCC 7 cut(s) 274, 1990, 2303, 3180, 3425, 3556, 3646
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 6 cut(s) 115, 1109, 2141, 2333, 2935, 3596
ScrFI CCNGG 6 cut(s) 175, 316, 379, 922, 3229, 4484
SduI GDGCHC 3 cut(s) 1557, 2364, 3167
SfcI CTRYAG 6 cut(s) 2151, 3078, 3325, 3420, 3492, 4140
SfiI GGCCNNNNNGGCC 1 cut(s) 179
SfuI TTCGAA 2 cut(s) 611, 4373
SinI GGWCC 6 cut(s) 274, 1990, 2303, 3180, 3425, 3556
SmiMI CAYNNNNRTG 4 cut(s) 1063, 1189, 2697, 3267
SmlI CTYRAG 2 cut(s) 1030, 3821
SmoI CTYRAG 2 cut(s) 1030, 3821
SnaBI TACGTA 1 cut(s) 2912
SphI GCATGC 1 cut(s) 4361
SseBI AGGCCT 2 cut(s) 182, 2243
SsiI CCGC 9 cut(s) 53, 66, 104, 193, 337, 711, 1414, 3510, 4305
SspI AATATT 1 cut(s) 535
StuI AGGCCT 2 cut(s) 182, 2243
StyD4I CCNGG 6 cut(s) 173, 314, 377, 920, 3227, 4482
StyI CCWWGG 2 cut(s) 3308, 3428
TaiI ACGT 4 cut(s) 1176, 1920, 2914, 3334
TaqI TCGA 7 cut(s) 515, 611, 857, 1465, 2943, 3004, 4373
TaqII GACCGA 1 cut(s) 214
TatI WGTACW 3 cut(s) 429, 902, 4148
TauI GCSGC 3 cut(s) 69, 340, 4307
TfiI GAWTC 9 cut(s) 112, 517, 914, 1955, 2638, 2956, 3416, 4058, 4285
TseFI GTSAC 6 cut(s) 17, 1681, 1689, 2249, 2464, 4135
Tsp45I GTSAC 6 cut(s) 17, 1681, 1689, 2249, 2464, 4135
TspDTI ATGAA 9 cut(s) 570, 822, 1133, 1403, 1826, 2841, 3093, 3144, 3716
TspGWI ACGGA 7 cut(s) 72, 816, 854, 2191, 2968, 4003, 4103
Tth111I GACNNNGTC 1 cut(s) 1687
Van91I CCANNNNNTGG 2 cut(s) 2648, 3471
Vha464I CTTAAG 1 cut(s) 1030
VpaK11BI GGWCC 6 cut(s) 274, 1990, 2303, 3180, 3425, 3556
XagI CCTNNNNNAGG 2 cut(s) 289, 3094
XapI RAATTY 8 cut(s) 132, 523, 1536, 1654, 1778, 1826, 2767, 3677
XbaI TCTAGA 1 cut(s) 2806
XceI RCATGY 1 cut(s) 4361
XmaJI CCTAGG 1 cut(s) 3308
XmnI GAANNNNTTC 1 cut(s) 1577
ZrmI AGTACT 1 cut(s) 431
Zsp2I ATGCAT 2 cut(s) 1858, 4441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.