Prupe.1G506100_v2.0.a1

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004120
Physical Location & Seq
Forward (+)
41798666 .. 41809509
10844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G506100.1

Sequence Viewer

Length: 4563 bp
ATGACCGGAGGCCGATGTCACGAGGAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACGGAGGAGAGGCCATGCCCAATTTCTAGGGTTACGCCTAAAATTCCGGCGACCCAACCGGAAATTCCCGAGAAGTCTAGCTCTTTGAGAATTGATTTTTACTCGCAGGCCAAGAAGGCTTTGTGTGAGCGCTCTCCGTATGATGTTACCGAGGATGGTTCAGCTTCGAGTGTGCCCACCACCTTGCCTAGGAGCTTGGCTAGCTTCTTGTCGAGGCAGTCTGATAATCGGAAACGGCACAAGAAGTCGCATGCCAGTGCTGAAAAGAAGAGTTCTCGGCAGAGCGAGAGGTCGCGGGGTTCCAACATATGGGCGGAGACTGAGGACTACTTTAGACCCTTGAAATTGCCTGATATTGACACCTTGTGTCAGGTGTCTGAGCTTAGTAATTTAGCTGCTCGCAAGTGTTTTTTGATTCCGGTTTTGGGAAATGGTCCGAGGGTGAATGCAAATGAAAACGTCAAAGCAAATGGGGTTTTTGTAAGTGAGGAGAATGCAAATGCCGGTAATTCAAATAGTGTTGTTGTCAAGGATGAGAGTATAAATGGTGGGAATGCTAATGATGCTGTTGTCAAGGAGGACAATGCAAATGTTGGGAATGCTAATGAGGTTGTCGTCAAGGCTGAAAGTGCAAATGATGGGAATGCCATTTCTGTTGCAGTTAGAAACGTGAATGAGAATGGTGGAAATGAAAATGGAGTTGTTGAAGATGAGGTCAAGAGGGTGAAGGATGAGCATTCCATGGAAATTGATAGTGTGGGTGCTTCTGGGTTGCCTGAGGGGGATAAGGGTTGTTCTGTTTCAGATTCTCCTTATGGTCTTGAATGGCTTTTAGGATATAGGAATAAGATTGCTTTAACATCGGAGCGCCCTTCAAAGAAACGGAAGGTTCTGGGTGTTGATGCAGGGTTGGAGAAAGTCTTAATTGGTTCCCCTTGTGATGGGAATTCATCTTTATGCCATTTCTGCTGCATGGGCGATGCAGGTAAAGAATCAAACCGATTGATTGTTTGTCGTTCTTGTAAGGTTGGAGTTCATCGGAAGTGCTATGGAGTGGTAGAGGATGTAGATGCATCATGGGTATGCTCATGGTGTAAGCAGAAGACTGATACTAGTAATTCAGTAAAGCCTTGTGCGCTTTGTCCAAAGCAGGGTGGGGCTTTAAAGCCGGTTCTTAAGAGTATTGAAAATGGTGGATCTGTGGAGTTTGCTCACTTGTTTTGTTGTCAGTGGATGCCTGAAGTTTATATAGAGGACTTAGTGAAGATGGAGCCCATACTAAATGTTGGAGGAGTGAATGAAACCCGCAGAAAGTTAATATGTAATGTATGCAAGGTGAAGTGGGGCGCATGTGTTCGATGCAGTCATGGAACCTGCAGAACTTCATTCCATCCATTATGTGCGAGGGAGGCAAAACAAAGAATGGAAATTTGGGGAAAATATGGGTGTGATAATGTTGAATTGAGGGCCTTCTGTCCAAAGCACTCAGAAGTACCTGATAACAGAAACATTCAATTAGTAGATCCCCCTGTCTCTACTGACGGGAATGCAAATGTCTCCAACCATTTACCTGTGGCATTGTCAGAGAGCAAATTAAACAAGTTAAGGGTTGGCCGTAGAAATGGTGATAAAATTGCAGTCGCTACTGGGGCTCCAGATAGTATTTCTGAGAAATCGGGTGATTGTGAATCACAGGAGATAGCGTTTCCTAGTTCAAGATTAAATGCTAGACTTCAGTCGGATTGTAGTGATGCACAGCCAATTATTGATGCAGGGTCATTTGAGAGGAGCAGTGAGGATGTTAATGCATCCAGCTCCCATAATTTTTCTCTGATTTTAAAGAAGCTGATTGATTGTGGAAAAGTTAATGTGAAGGATGTGGCATCAGACATTGGCCTTTCATCTGATTCTTTAGCTGCATCACTTGCTGATGATAGCATGTTCCCTGATGTGCAATGCAGAATAGTTAAATGGCTTAAAGACCATTCTAACTTGGACTTAAGGCAGAAAAATGGGAAAATGAAATTAAGATCAGCAATTTCATCCATGGCTGAATTTGGGGGTTCTGATGGTTCTGATGCTGCATCTTTATCAGAGTCTGATATGACAGATGTAGCTGTTAAGTCAGTACCCCCACGGAGAAGAACCAAAAGTAGTTTTAGGATTTTGAAGGACAACAAAGTAATAAGCTCATCTGAGGGGATCTTTTGTGACAATGGCACGTTGAACAAGATTAAGGTAGATCAAATGATTACTGATGAACAAGAAAATTCAAGTAAAGTCTCCATCCCTGATCCCGTTGAGAAGAATTTGACGGAGGCTGTTGGGTTTCAGCATTCTTTGCCGACACTTACACCTAAATCAGAAGGTAATTCAGCTAAACCCTTAAATTGCAGCGTTGTGCAAAAGGGTCAAGAACAGCTGGCTACTATTCCTTTGCAGAGTACCTCAGTGATCGTAAATGAAGATCAGTTGTTTTCAGTTGCAAAACCAGTTGATCCTGAAGTCAATAAATCTGAGCCAGAAGTTCCTAGTTGTTATGTCCATCCGTATATTGAAAAGAAATTGTTTGAGATGCAGAATGGAGCAAATCCAATATGTGGTTCAAGCGAGGGAGAAATTTCTCGTCTGGAGGCATCTTCCCATGCCAGTGTTTGCTGTAATCACCAATATAAGCATCCAAAATGCTGTGATAATATTTGTAAATCTGATGAGGTAACTTTAGAAGAGTTGGTTAAGGCTCGAAAAATGGGAGCTCAAGAACCGTCTCCAGAAGATGAAGTGGAAGGAGAACTCATTTATTACCAGAATAGGTTGCTGAGCAATGTAGTTGCGAGAAAGCATTTTACTGATATTTTAATGTATAATGTTGTTAAGACTCTTCCATGGGAACTTGATGCTGTACGGAAGCAAAAATGGGATGCTGTGCTTGTTAATCAGTATCTTTGTGAGCTTAGAGAGGCAAAGAAGCAGGGTAGGAAGGAGAGACGGCATAAAGAAGCACAGGCTGTGCTTGCAGCTGCAACTGCTGCTGCTGCAGCCTCTTCTAGGATTTCATCATTTAGGAAAGATGTCCTTGATGAATCTTCCCATCAGGAGAATGTGATGAAGTTGAATACTTCTAGTGGGAGGTCTGGCTTTTCCTCACAGCTGATGCATCGGGCGAAAGAGACATTTCCGAGGGTGGCTGTCCCTAGGATTTCTGTGGAAAAACACACTGGTTTTGTTCATTCTGTTGCAGATTTTTCTAAAGAACATCCTAGATCTTGTGACATCTGCAGACGTTCTGAGACATTGTTAAACCCGATCTTAGTCTGTTCCAGTTGCAAGGTTGCCATTCACTTGGATTGCTATCGTAGTGTTAGAGAATCTACAGGTCCGTGGTACTGTGAATTATGTGAAGAACTATCATCATCTAGAAGCTCTGGAGCTCCTGTCAATTTTTGGGAGAAAGATCATTTTGCTGCAGAATGTGGTTTATGTGGTGGCAAAACTGGGGCTTTTAGAAAATCTTCTGATGGTCAGTGGGTGCATGCCTTCTGTGCTGAGTGGATCTTTGAATCAACATTCAAAAGGGGACAAGTATCTCCCGTTGAGGGAATGGAGACGATTTCTAAGGGGATTGATTTTTGTTATATCTGCCGACGCAAATGTGGTGTTTGCATAAAGTGCAACTATGGTAACTGTCAGGCAACATTTCACCCTTCATGTGCTAGAAGTTCTGGTTTTTACATGCATGTGAAAACTTTGGGCGGAAAGATTCAACACAAGGGGTACTGTGAAAAGCACAGCGTTGAGCAGAGGGCGAAGGCTGAAACACAAAAACATGGAACTGAGGACTTGGAGAACCTCAGGAAAATTAGGGTTGAACTAGAGAGGGTACGCCTTCTTTGCGAAAGAATCATCAAACGAGAAAAAGTAAAGCGGGAACTTCTCATTTGTTCACATGATCTTCTTGCTGTGAGGAGAGATCATGTTGCTCGATCCGTGCTGGTTCATAGTCCTTTCTTGCTACCTGATGTTAGTTCTGAATCAGCTACAACATCTCTTAAAGGACATACAGATGGTTACAAATCATGCAGTGAGGCATTTCAAAAATCAGATGATGTGACTGTGGATAGTACAATTTCCGAAAAGCGACGGACCAGAGTTCTGATAACTATCGACAATGATCAAAGGACAGATGATGACAGCTCCACATCCCAAGATCATTTTACTCCAAAGTTCACAGAGAGGGCACAATTTTCTGAGAAACAGATTCCTTGTAGACCTACTGCTGCAAATTGTAATATTTCGGAAGACGGGGGATGGAGGTCAAAATCTAGAAAGCATGCTGAGACATTTGAGAAAGAACTGGTAATGACTTCAGATCAAGCATCGATGAAAAATATGCTATTACCCAAAGGATATGCATATGTCCCTGCGGATTGCATCCCAAATGAAAAGCAGATCAACCAGGATGCTTGTTCTGGTGAACCCCCAGAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1521

Amino Acids

167.36

Weight (kDa)

7.5

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1040, 1448
AccB7I CCANNNNNTGG 2 cut(s) 375, 2666
AccI GTMKAC 1 cut(s) 4333
AccII CGCG 1 cut(s) 361
AciI CCGC 8 cut(s) 50, 63, 361, 380, 1372, 3819, 3991, 4490
AclWI GGATC 7 cut(s) 1270, 1583, 2276, 2354, 2558, 3626, 4044
AcoI YGGCCR 1 cut(s) 1678
AcsI RAATTY 8 cut(s) 108, 129, 1012, 1494, 2120, 2335, 2374, 2685
AcuI CTGAAG 4 cut(s) 1326, 1784, 2589, 4416
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 8 cut(s) 1560, 2196, 2512, 2970, 3452, 3842, 3948, 4189
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 9 cut(s) 255, 375, 491, 1007, 1217, 2666, 3114, 3662, 4550
AflII CTTAAG 2 cut(s) 1241, 2065
AhlI ACTAGT 1 cut(s) 1178
AjnI CCWGG 1 cut(s) 4521
AjuI GAANNNNNNNTTGG 6 cut(s) 114, 146, 1480, 1512, 2653, 2685
Alw21I GWGCWC 2 cut(s) 2824, 3499
AlwI GGATC 7 cut(s) 1270, 1583, 2276, 2354, 2558, 3626, 4044
AlwNI CAGNNNCTG 1 cut(s) 2165
Ama87I CYCGRG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 6 cut(s) 10, 77, 174, 1533, 1678, 1960
ApoI RAATTY 8 cut(s) 108, 129, 1012, 1494, 2120, 2335, 2374, 2685
Asp700I GAANNNNTTC 1 cut(s) 3577
AspA2I CCTAGG 2 cut(s) 254, 3260
AspLEI GCGC 4 cut(s) 198, 936, 1204, 1415
AspS9I GGNCC 4 cut(s) 500, 1533, 3443, 4209
AsuHPI GGTGA 8 cut(s) 520, 802, 1414, 1703, 1757, 2723, 3758, 4550
AsuNHI GCTAGC 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 3 cut(s) 500, 3443, 4209
AvrII CCTAGG 2 cut(s) 254, 3260
AxyI CCTNAGG 2 cut(s) 843, 3917
BaeGI GKGCMC 2 cut(s) 243, 4306
BanII GRGCYC 4 cut(s) 1341, 1720, 2824, 3499
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 1175, 4371
Bbv12I GWGCWC 2 cut(s) 2824, 3499
BceAI ACGGC 3 cut(s) 317, 1665, 3071
BciT130I CCWGG 1 cut(s) 4523
BclI TGATCA 1 cut(s) 4237
BcuI ACTAGT 1 cut(s) 1178
BfmI CTRYAG 5 cut(s) 1441, 3102, 3343, 3438, 3531
BfoI RGCGCY 2 cut(s) 199, 937
BfrI CTTAAG 2 cut(s) 1241, 2065
BfuAI ACCTGC 2 cut(s) 1040, 1448
BglI GCCNNNNNGGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 3329
BlnI CCTAGG 2 cut(s) 254, 3260
BlpI GCTNAGC 1 cut(s) 2885
Bme1390I CCNGG 1 cut(s) 4523
Bme18I GGWCC 3 cut(s) 500, 3443, 4209
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 500, 1533, 3443, 4209
BmiI GGNNCC 5 cut(s) 367, 997, 1338, 1438, 1719
BmrFI CCNGG 1 cut(s) 4523
BmrI ACTGGG 2 cut(s) 1722, 3570
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 2 cut(s) 1722, 3570
BoxI GACNNNNGTC 1 cut(s) 1801
BpiI GAAGAC 2 cut(s) 1175, 4371
BpmI CTGGAG 4 cut(s) 1704, 2717, 2820, 3513
Bpu1102I GCTNAGC 1 cut(s) 2885
BpuEI CTTGAG 1 cut(s) 2808
Bsa29I ATCGAT 1 cut(s) 4445
BsaBI GATNNNNATC 2 cut(s) 3417, 4226
BsaWI WCCGGW 3 cut(s) 5, 124, 484
BsaXI ACNNNNNCTCC 6 cut(s) 1702, 1732, 1754, 1784, 3486, 3516
Bsc4I CCNNNNNNNGG 9 cut(s) 255, 375, 491, 1007, 1217, 2666, 3114, 3662, 4550
Bse118I RCCGGY 2 cut(s) 569, 1234
Bse1I ACTGG 8 cut(s) 321, 1717, 2558, 2715, 3289, 3387, 3565, 4425
Bse21I CCTNAGG 2 cut(s) 843, 3917
Bse3DI GCAATG 2 cut(s) 2027, 2896
Bse8I GATNNNNATC 2 cut(s) 3417, 4226
BseBI CCWGG 1 cut(s) 4523
BseCI ATCGAT 1 cut(s) 4445
BseJI GATNNNNATC 2 cut(s) 3417, 4226
BseLI CCNNNNNNNGG 9 cut(s) 255, 375, 491, 1007, 1217, 2666, 3114, 3662, 4550
BseMI GCAATG 2 cut(s) 2027, 2896
BseNI ACTGG 8 cut(s) 321, 1717, 2558, 2715, 3289, 3387, 3565, 4425
BseRI GAGGAG 6 cut(s) 38, 86, 569, 1371, 1867, 4045
BseSI GKGCMC 2 cut(s) 243, 4306
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 6 cut(s) 12, 79, 176, 1535, 1680, 1962
BshVI ATCGAT 1 cut(s) 4445
BsiHKAI GWGCWC 2 cut(s) 2824, 3499
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 6 cut(s) 6, 113, 125, 485, 570, 1235
BslFI GGGAC 3 cut(s) 3242, 3657, 4469
BslI CCNNNNNNNGG 9 cut(s) 255, 375, 491, 1007, 1217, 2666, 3114, 3662, 4550
BsmBI CGTCTC 3 cut(s) 2838, 3046, 3665
BsmFI GGGAC 3 cut(s) 3242, 3657, 4469
BsmI GAATGC 8 cut(s) 517, 565, 625, 670, 715, 802, 1618, 2401
BsnI GGCC 6 cut(s) 12, 79, 176, 1535, 1680, 1962
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 6 cut(s) 243, 1341, 1720, 2824, 3499, 4306
Bsp1720I GCTNAGC 1 cut(s) 2885
Bsp19I CCATGG 3 cut(s) 807, 2112, 2951
BspACI CCGC 8 cut(s) 50, 63, 361, 380, 1372, 3819, 3991, 4490
BspANI GGCC 6 cut(s) 12, 79, 176, 1535, 1680, 1962
BspDI ATCGAT 1 cut(s) 4445
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 5 cut(s) 367, 997, 1338, 1438, 1719
BspMAI CTGCAG 4 cut(s) 1445, 3106, 3347, 3535
BspMI ACCTGC 2 cut(s) 1040, 1448
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 7 cut(s) 1270, 1583, 2276, 2354, 2558, 3626, 4044
BspTI CTTAAG 2 cut(s) 1241, 2065
BsrDI GCAATG 2 cut(s) 2027, 2896
BsrFI RCCGGY 2 cut(s) 569, 1234
BsrI ACTGG 8 cut(s) 321, 1717, 2558, 2715, 3289, 3387, 3565, 4425
BssAI RCCGGY 2 cut(s) 569, 1234
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 5 cut(s) 254, 807, 2112, 2951, 3260
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 4523
Bst4CI ACNGT 5 cut(s) 2832, 3455, 3752, 3845, 4180
Bst6I CTCTTC 4 cut(s) 329, 2787, 2952, 3115
BstAFI CTTAAG 2 cut(s) 1241, 2065
BstAPI GCANNNNNTGC 4 cut(s) 1991, 2407, 3095, 3735
BstC8I GCNNGC 8 cut(s) 174, 268, 318, 466, 2490, 3081, 3600, 4398
BstDSI CCRYGG 5 cut(s) 807, 2112, 2201, 2951, 3446
BstENI CCTNNNNNAGG 2 cut(s) 253, 3112
BstFNI CGCG 1 cut(s) 361
BstH2I RGCGCY 2 cut(s) 199, 937
BstHHI GCGC 4 cut(s) 198, 936, 1204, 1415
BstNI CCWGG 1 cut(s) 4523
BstNSI RCATGY 7 cut(s) 320, 1419, 2008, 3602, 3802, 3806, 4400
BstPAI GACNNNNGTC 1 cut(s) 1801
BstSCI CCNGG 1 cut(s) 4521
BstSFI CTRYAG 5 cut(s) 1441, 3102, 3343, 3438, 3531
BstSLI GKGCMC 2 cut(s) 243, 4306
BstUI CGCG 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 1175, 4371
BstX2I RGATCY 5 cut(s) 1262, 1588, 2268, 3329, 3618
BstXI CCANNNNNNTGG 1 cut(s) 3409
BstYI RGATCY 5 cut(s) 1262, 1588, 2268, 3329, 3618
Bsu15I ATCGAT 1 cut(s) 4445
Bsu36I CCTNAGG 2 cut(s) 843, 3917
BsuRI GGCC 6 cut(s) 12, 79, 176, 1535, 1680, 1962
BsuTUI ATCGAT 1 cut(s) 4445
BtgI CCRYGG 5 cut(s) 807, 2112, 2201, 2951, 3446
BtgZI GCGATG 1 cut(s) 1059
BtsI GCAGTG 2 cut(s) 1864, 4153
BtsIMutI CAGTG 8 cut(s) 328, 1301, 1864, 2523, 2722, 3282, 3596, 4153
BveI ACCTGC 2 cut(s) 1040, 1448
Cac8I GCNNGC 8 cut(s) 174, 268, 318, 466, 2490, 3081, 3600, 4398
CaiI CAGNNNCTG 1 cut(s) 2165
CfoI GCGC 4 cut(s) 198, 936, 1204, 1415
Cfr10I RCCGGY 2 cut(s) 569, 1234
Cfr13I GGNCC 4 cut(s) 500, 1533, 3443, 4209
ClaI ATCGAT 1 cut(s) 4445
CseI GACGC 1 cut(s) 3720
Csp6I GTAC 8 cut(s) 1559, 2195, 2511, 2969, 3451, 3841, 3947, 4188
CviQI GTAC 8 cut(s) 1559, 2195, 2511, 2969, 3451, 3841, 3947, 4188
DraI TTTAAA 2 cut(s) 1230, 1905
DraIII CACNNNGTG 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 1678
Eam1104I CTCTTC 4 cut(s) 329, 2787, 2952, 3115
EarI CTCTTC 4 cut(s) 329, 2787, 2952, 3115
EciI GGCGGA 2 cut(s) 395, 3834
Ecl136II GAGCTC 2 cut(s) 2822, 3497
Eco130I CCWWGG 5 cut(s) 254, 807, 2112, 2951, 3260
Eco24I GRGCYC 4 cut(s) 1341, 1720, 2824, 3499
Eco47I GGWCC 3 cut(s) 500, 3443, 4209
Eco47III AGCGCT 1 cut(s) 197
Eco53kI GAGCTC 2 cut(s) 2822, 3497
Eco57I CTGAAG 4 cut(s) 1326, 1784, 2589, 4416
Eco81I CCTNAGG 2 cut(s) 843, 3917
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 2 cut(s) 2822, 3497
EcoNI CCTNNNNNAGG 2 cut(s) 253, 3112
EcoO109I RGGNCCY 1 cut(s) 1533
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 1 cut(s) 4521
EcoT14I CCWWGG 5 cut(s) 254, 807, 2112, 2951, 3260
EcoT22I ATGCAT 5 cut(s) 1141, 1876, 3225, 3804, 4480
EcoT38I GRGCYC 4 cut(s) 1341, 1720, 2824, 3499
ErhI CCWWGG 5 cut(s) 254, 807, 2112, 2951, 3260
Esp3I CGTCTC 3 cut(s) 2838, 3046, 3665
FalI AAGNNNNNCTT 2 cut(s) 3126, 3158
FaqI GGGAC 3 cut(s) 3242, 3657, 4469
FauI CCCGC 3 cut(s) 354, 1379, 3984
FauNDI CATATG 2 cut(s) 374, 4480
FbaI TGATCA 1 cut(s) 4237
FblI GTMKAC 1 cut(s) 4333
FriOI GRGCYC 4 cut(s) 1341, 1720, 2824, 3499
GlaI GCGC 4 cut(s) 197, 935, 1203, 1414
GsuI CTGGAG 4 cut(s) 1704, 2717, 2820, 3513
HaeII RGCGCY 2 cut(s) 199, 937
HaeIII GGCC 6 cut(s) 12, 79, 176, 1535, 1680, 1962
HapII CCGG 6 cut(s) 6, 113, 125, 485, 570, 1235
HgaI GACGC 1 cut(s) 3720
HhaI GCGC 4 cut(s) 198, 936, 1204, 1415
Hin6I GCGC 4 cut(s) 196, 934, 1202, 1413
HinP1I GCGC 4 cut(s) 196, 934, 1202, 1413
HpaII CCGG 6 cut(s) 6, 113, 125, 485, 570, 1235
HphI GGTGA 8 cut(s) 520, 802, 1414, 1703, 1757, 2723, 3758, 4550
Hpy166II GTNNAC 4 cut(s) 4010, 4293, 4334, 4541
Hpy8I GTNNAC 4 cut(s) 4010, 4293, 4334, 4541
Hpy99I CGWCG 2 cut(s) 3714, 4209
HpyCH4III ACNGT 5 cut(s) 2832, 3455, 3752, 3845, 4180
HpyCH4IV ACGT 4 cut(s) 525, 735, 2288, 3349
HpySE526I ACGT 4 cut(s) 525, 735, 2288, 3349
HspAI GCGC 4 cut(s) 196, 934, 1202, 1413
Ksp22I TGATCA 1 cut(s) 4237
MaeII ACGT 4 cut(s) 525, 735, 2288, 3349
MaeIII GTNAC 9 cut(s) 17, 97, 211, 2276, 2782, 3335, 3746, 4133, 4174
MflI RGATCY 5 cut(s) 1262, 1588, 2268, 3329, 3618
MhlI GDGCHC 6 cut(s) 243, 1341, 1720, 2824, 3499, 4306
MlyI GAGTC 2 cut(s) 2171, 2938
MmeI TCCRAC 6 cut(s) 393, 957, 1075, 1333, 1650, 1785
Mph1103I ATGCAT 5 cut(s) 1141, 1876, 3225, 3804, 4480
MroXI GAANNNNTTC 1 cut(s) 3577
MslI CAYNNNNRTG 6 cut(s) 321, 1021, 1147, 2715, 3803, 4128
MspA1I CMGCKG 3 cut(s) 2488, 3086, 3217
MspCI CTTAAG 2 cut(s) 1241, 2065
MspI CCGG 6 cut(s) 6, 113, 125, 485, 570, 1235
MspR9I CCNGG 1 cut(s) 4523
Mva1269I GAATGC 8 cut(s) 517, 565, 625, 670, 715, 802, 1618, 2401
MvaI CCWGG 1 cut(s) 4523
MvnI CGCG 1 cut(s) 361
NcoI CCATGG 3 cut(s) 807, 2112, 2951
NdeI CATATG 2 cut(s) 374, 4480
NheI GCTAGC 1 cut(s) 266
NlaIV GGNNCC 5 cut(s) 367, 997, 1338, 1438, 1719
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 4 cut(s) 17, 2276, 3335, 4174
NsiI ATGCAT 5 cut(s) 1141, 1876, 3225, 3804, 4480
NspI RCATGY 7 cut(s) 320, 1419, 2008, 3602, 3802, 3806, 4400
PaeI GCATGC 3 cut(s) 320, 3602, 4400
PctI GAATGC 8 cut(s) 517, 565, 625, 670, 715, 802, 1618, 2401
PdmI GAANNNNTTC 1 cut(s) 3577
PflMI CCANNNNNTGG 2 cut(s) 375, 2666
PleI GAGTC 2 cut(s) 2170, 2938
PpsI GAGTC 2 cut(s) 2170, 2938
PshAI GACNNNNGTC 1 cut(s) 1801
Psp124BI GAGCTC 2 cut(s) 2824, 3499
Psp6I CCWGG 1 cut(s) 4521
PspGI CCWGG 1 cut(s) 4521
PspN4I GGNNCC 5 cut(s) 367, 997, 1338, 1438, 1719
PspPI GGNCC 4 cut(s) 500, 1533, 3443, 4209
PstI CTGCAG 4 cut(s) 1445, 3106, 3347, 3535
PstNI CAGNNNCTG 1 cut(s) 2165
PsuI RGATCY 5 cut(s) 1262, 1588, 2268, 3329, 3618
PvuII CAGCTG 3 cut(s) 2488, 3086, 3217
RsaI GTAC 8 cut(s) 1560, 2196, 2512, 2970, 3452, 3842, 3948, 4189
RsaNI GTAC 8 cut(s) 1559, 2195, 2511, 2969, 3451, 3841, 3947, 4188
RseI CAYNNNNRTG 6 cut(s) 321, 1021, 1147, 2715, 3803, 4128
SacI GAGCTC 2 cut(s) 2824, 3499
Sau96I GGNCC 4 cut(s) 500, 1533, 3443, 4209
SchI GAGTC 2 cut(s) 2171, 2938
ScrFI CCNGG 1 cut(s) 4523
SduI GDGCHC 6 cut(s) 243, 1341, 1720, 2824, 3499, 4306
SfcI CTRYAG 5 cut(s) 1441, 3102, 3343, 3438, 3531
SinI GGWCC 3 cut(s) 500, 3443, 4209
SmiMI CAYNNNNRTG 6 cut(s) 321, 1021, 1147, 2715, 3803, 4128
SmlI CTYRAG 3 cut(s) 1241, 2065, 2823
SmoI CTYRAG 3 cut(s) 1241, 2065, 2823
SpeI ACTAGT 1 cut(s) 1178
SphI GCATGC 3 cut(s) 320, 3602, 4400
SsiI CCGC 8 cut(s) 50, 63, 361, 380, 1372, 3819, 3991, 4490
SspI AATATT 2 cut(s) 2764, 4357
SstI GAGCTC 2 cut(s) 2824, 3499
StyD4I CCNGG 1 cut(s) 4521
StyI CCWWGG 5 cut(s) 254, 807, 2112, 2951, 3260
TaaI ACNGT 5 cut(s) 2832, 3455, 3752, 3845, 4180
TaiI ACGT 4 cut(s) 528, 738, 2291, 3352
TaqI TCGA 7 cut(s) 233, 278, 1423, 2809, 4048, 4230, 4445
TatI WGTACW 1 cut(s) 4187
TauI GCSGC 1 cut(s) 66
TscAI CASTG 8 cut(s) 328, 1301, 1864, 2523, 2722, 3289, 3596, 4153
TseFI GTSAC 4 cut(s) 17, 2276, 3335, 4174
Tsp45I GTSAC 4 cut(s) 17, 2276, 3335, 4174
TspRI CASTG 8 cut(s) 328, 1301, 1864, 2523, 2722, 3289, 3596, 4153
Van91I CCANNNNNTGG 2 cut(s) 375, 2666
Vha464I CTTAAG 2 cut(s) 1241, 2065
VpaK11BI GGWCC 3 cut(s) 500, 3443, 4209
XagI CCTNNNNNAGG 2 cut(s) 253, 3112
XapI RAATTY 8 cut(s) 108, 129, 1012, 1494, 2120, 2335, 2374, 2685
XbaI TCTAGA 2 cut(s) 3482, 4388
XceI RCATGY 7 cut(s) 320, 1419, 2008, 3602, 3802, 3806, 4400
XmaJI CCTAGG 2 cut(s) 254, 3260
XmiI GTMKAC 1 cut(s) 4333
XmnI GAANNNNTTC 1 cut(s) 3577
Zsp2I ATGCAT 5 cut(s) 1141, 1876, 3225, 3804, 4480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.