Rorug07G0340000

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004120
Physical Location & Seq
Forward (+)
37431392 .. 37432867
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0340000.1

Sequence Viewer

Length: 1320 bp
ATGGGCGATAAGAACGACCCCCACAGAAGCCAATGGCGAGTTCCCTTTCTGTATGTCCTTTGGCACCGAGGCAGTGATCTTGCTATGACTAAAGCCATTTTAGAAGCACTCCCACAAACATTTCATAGATATTGCAGTTGGCACATTCTTAATAAATTTTCTGAGAAGCTAGATGCGATTAAATATCGGGATTCCTACCAAGACTTTCATAGCTGCATATGGAATTCAAGTAGTAGAGAGGAGTTTGACTCAAGATGGATTGAAATTATTGAGAAGAGTGTGTTGAGTGATAACAAGTGGCTGGAGTCGATATACGAAATTCGTTCATCATGGATACCAGCATATGTTAATCATGTTTTCTCAGCTGGAATGTCAAGTAGTCAAAGAGCAGAGAGTCAACATTCTTTCTTCAAGAATTATGTTTCTAAGTGGAATTCATTGGTGGAATTTATGGTTCAGTTTAAGAGGGGACTTCTTCACCAACGCCATTCTGAGTTAGAGGAAGATCATATTAATATTGATGAGAAGGCAAAAACTGTCATGTCCCTTGACATAGAAGATCATATGGCCAAGGTTTATACATGTAAACTATTTTATGAAGTTCAAGAACAGTTGAGAGAGAGCTTCAAATATAAACTAGAACTTCTGTTTGAAAATGTCACTCAAGAACAGTTTAAGGTTATGCAAAAGAACATTGATACTTGTAAGTCTCGTGAACTCACTTACGAAAAGAATTCTGATTTTGCATCATGCAGCTGTAGAAAGTTTGGCAGTGAAGGGCTCCCATGTCGGCATGTTTTGGCATATTTGATTAAGATCCAAGATGTTGATAAATTGCCTATTCAGTACATCTTGAAGAGATGGACTAAAGCTACAAGACAGAGAGTTGTGTTAAATTCTGATGGAATGGAGATAAAAGATAACAAAGCTTTACTTGCAAGGAGGACTAAACTATTCCAGCATGCTACATATGCAATTGATAAGGTTATGAATATTAAACCATTAATTAGTAATGAAAGTGGACAAAGTGCAGTAGGTTTGGAGACCAAGACTGATACTATTCAGCATGTTTTTAATGAACCAGATCAAGTGAGAGCAAAAGGGTGTGGGAGAAGGTTGAAGAAAGGAAAAGAGAAGAAGAAAGTTAAGGTAAAGGACAGTCAAGGTAGGCAATGCCATGGATGTGGACTATTTGGTCAGTCATATGACAAAAGAAATTGTCCAACACTTCATGGAAGACCTGCTATTGATAAAGATGGAGATTCAAGTTCCACTAGTATGGATGAGGATAATTGTTCATCATCTCATTTCACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

439

Amino Acids

51.25

Weight (kDa)

8.93

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 247 - 271 6.9e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1194
Acc36I ACCTGC 1 cut(s) 1249
AccB1I GGYRCC 1 cut(s) 63
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 7 cut(s) 155, 223, 318, 433, 446, 733, 895
AfaI GTAC 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 9 cut(s) 228, 263, 412, 605, 628, 653, 856, 1120, 1266
AhlI ACTAGT 1 cut(s) 1274
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 7 cut(s) 169, 213, 365, 624, 756, 872, 929
AluI AGCT 7 cut(s) 169, 213, 365, 624, 756, 872, 929
Alw26I GTCTC 2 cut(s) 714, 1037
AlwI GGATC 1 cut(s) 811
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 213, 753
ApoI RAATTY 7 cut(s) 155, 223, 318, 433, 446, 733, 895
AseI ATTAAT 2 cut(s) 513, 1004
AsuHPI GGTGA 1 cut(s) 470
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 783
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 1243
BbvI GCAGC 2 cut(s) 200, 765
BccI CCATC 4 cut(s) 249, 855, 896, 1250
BciVI GTATCC 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 714, 1037
BcuI ACTAGT 1 cut(s) 1274
BfaI CTAG 3 cut(s) 170, 638, 1275
BfmI CTRYAG 1 cut(s) 757
BfuAI ACCTGC 1 cut(s) 1249
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 2 cut(s) 214, 754
BlsI GCNGC 2 cut(s) 215, 755
BmiI GGNNCC 2 cut(s) 65, 782
BmsI GCATC 2 cut(s) 163, 755
BpiI GAAGAC 1 cut(s) 1243
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 235, 648
BsaBI GATNNNNATC 1 cut(s) 815
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 3 cut(s) 67, 570, 1177
Bse3DI GCAATG 1 cut(s) 1178
Bse8I GATNNNNATC 1 cut(s) 815
BseDI CCNNGG 3 cut(s) 67, 570, 1177
BseGI GGATG 2 cut(s) 1187, 1288
BseJI GATNNNNATC 1 cut(s) 815
BseMI GCAATG 1 cut(s) 1178
BseMII CTCAG 3 cut(s) 153, 375, 483
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 200, 765
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 63
BslFI GGGAC 2 cut(s) 483, 529
BsmAI GTCTC 2 cut(s) 714, 1037
BsmFI GGGAC 2 cut(s) 483, 529
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 1037
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 5 cut(s) 76, 505, 559, 816, 1084
Bsp19I CCATGG 1 cut(s) 1177
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 3 cut(s) 154, 374, 484
BspLI GGNNCC 2 cut(s) 65, 782
BspMI ACCTGC 1 cut(s) 1249
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 1178
BssECI CCNNGG 3 cut(s) 67, 570, 1177
BssMI GATC 5 cut(s) 76, 505, 559, 816, 1084
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 570, 1177
Bst2BI CACGAG 1 cut(s) 711
Bst4CI ACNGT 4 cut(s) 538, 612, 672, 1160
Bst6I CTCTTC 2 cut(s) 269, 851
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 4 cut(s) 162, 361, 426, 492
BstDSI CCRYGG 1 cut(s) 1177
BstF5I GGATG 2 cut(s) 1187, 1288
BstKTI GATC 5 cut(s) 79, 508, 562, 819, 1087
BstMAI GTCTC 2 cut(s) 714, 1037
BstMBI GATC 5 cut(s) 76, 505, 559, 816, 1084
BstMWI GCNNNNNNNGC 2 cut(s) 935, 971
BstNSI RCATGY 4 cut(s) 585, 797, 965, 1070
BstSFI CTRYAG 1 cut(s) 757
BstV1I GCAGC 2 cut(s) 200, 765
BstV2I GAAGAC 1 cut(s) 1243
BstX2I RGATCY 1 cut(s) 816
BstXI CCANNNNNNTGG 2 cut(s) 1184, 1279
BstYI RGATCY 1 cut(s) 816
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 1177
BtsCI GGATG 2 cut(s) 1187, 1288
BtsI GCAGTG 2 cut(s) 79, 778
BtsIMutI CAGTG 2 cut(s) 79, 778
BveI ACCTGC 1 cut(s) 1249
Cac8I GCNNGC 1 cut(s) 963
Csp6I GTAC 1 cut(s) 847
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 4 cut(s) 162, 361, 426, 492
DpnI GATC 5 cut(s) 78, 507, 561, 818, 1086
DpnII GATC 5 cut(s) 76, 505, 559, 816, 1084
DrdI GACNNNNNNGTC 1 cut(s) 1194
DseDI GACNNNNNNGTC 1 cut(s) 1194
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 2 cut(s) 269, 851
EarI CTCTTC 2 cut(s) 269, 851
Eco130I CCWWGG 2 cut(s) 570, 1177
Eco24I GRGCYC 1 cut(s) 783
Eco31I GGTCTC 1 cut(s) 1037
EcoRI GAATTC 3 cut(s) 223, 433, 733
EcoT14I CCWWGG 2 cut(s) 570, 1177
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 570, 1177
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 2 cut(s) 483, 529
FauNDI CATATG 5 cut(s) 218, 343, 564, 970, 1204
Fnu4HI GCNGC 2 cut(s) 214, 754
FokI GGATG 2 cut(s) 1194, 1295
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 2 cut(s) 214, 754
FspBI CTAG 3 cut(s) 170, 638, 1275
GluI GCNGC 2 cut(s) 214, 754
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 1 cut(s) 569
HincII GTYRAC 1 cut(s) 398
HindII GTYRAC 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 5 cut(s) 191, 248, 305, 394, 1262
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 5 cut(s) 398, 587, 716, 1022, 1187
Hpy188I TCNGA 4 cut(s) 163, 493, 739, 901
Hpy188III TCNNGA 7 cut(s) 188, 252, 412, 605, 665, 713, 853
Hpy8I GTNNAC 5 cut(s) 398, 587, 716, 1022, 1187
HpyAV CCTTC 3 cut(s) 520, 770, 1107
HpyCH4III ACNGT 4 cut(s) 538, 612, 672, 1160
HpyCH4V TGCA 8 cut(s) 135, 216, 685, 746, 753, 938, 974, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 935, 971
HpyF3I CTNAG 4 cut(s) 162, 361, 426, 492
Kzo9I GATC 5 cut(s) 76, 505, 559, 816, 1084
LmnI GCTCC 1 cut(s) 786
LpnPI CCDG 6 cut(s) 287, 351, 351, 971, 1095, 1254
Lsp1109I GCAGC 2 cut(s) 200, 765
LweI GCATC 2 cut(s) 163, 755
MaeI CTAG 3 cut(s) 170, 638, 1275
MaeIII GTNAC 1 cut(s) 658
MalI GATC 5 cut(s) 78, 507, 561, 818, 1086
MboI GATC 5 cut(s) 76, 505, 559, 816, 1084
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 783
MlsI TGGCCA 1 cut(s) 569
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 3 cut(s) 242, 314, 403
MmeI TCCRAC 1 cut(s) 1247
MnlI CCTC 6 cut(s) 62, 232, 459, 493, 936, 1279
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 1182, 1277
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 365, 756
MunI CAATTG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 935, 971
NcoI CCATGG 1 cut(s) 1177
NdeI CATATG 5 cut(s) 218, 343, 564, 970, 1204
NdeII GATC 5 cut(s) 76, 505, 559, 816, 1084
NlaIV GGNNCC 2 cut(s) 65, 782
NmuCI GTSAC 1 cut(s) 658
NspI RCATGY 4 cut(s) 585, 797, 965, 1070
PaeI GCATGC 1 cut(s) 965
PciI ACATGT 1 cut(s) 581
PfeI GAWTC 2 cut(s) 191, 1262
PkrI GCNGC 2 cut(s) 215, 755
PleI GAGTC 3 cut(s) 242, 313, 402
PpsI GAGTC 3 cut(s) 242, 313, 402
PscI ACATGT 1 cut(s) 581
PshBI ATTAAT 2 cut(s) 513, 1004
PspN4I GGNNCC 2 cut(s) 65, 782
PsuI RGATCY 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 365, 756
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
RseI CAYNNNNRTG 2 cut(s) 1182, 1277
SatI GCNGC 2 cut(s) 214, 754
Sau3AI GATC 5 cut(s) 76, 505, 559, 816, 1084
SchI GAGTC 3 cut(s) 242, 314, 403
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 2 cut(s) 163, 755
SfcI CTRYAG 1 cut(s) 757
SmiMI CAYNNNNRTG 2 cut(s) 1182, 1277
SmlI CTYRAG 2 cut(s) 250, 663
SmoI CTYRAG 2 cut(s) 250, 663
SpeI ACTAGT 1 cut(s) 1274
SphI GCATGC 1 cut(s) 965
SspI AATATT 2 cut(s) 517, 994
SspMI CTAG 3 cut(s) 170, 638, 1275
StyI CCWWGG 2 cut(s) 570, 1177
TaaI ACNGT 4 cut(s) 538, 612, 672, 1160
TaqI TCGA 1 cut(s) 308
TatI WGTACW 1 cut(s) 846
TfiI GAWTC 2 cut(s) 191, 1262
TscAI CASTG 2 cut(s) 79, 778
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 2 cut(s) 213, 753
Tsp45I GTSAC 1 cut(s) 658
TspRI CASTG 2 cut(s) 79, 778
VspI ATTAAT 2 cut(s) 513, 1004
XapI RAATTY 7 cut(s) 155, 223, 318, 433, 446, 733, 895
XceI RCATGY 4 cut(s) 585, 797, 965, 1070
XspI CTAG 3 cut(s) 170, 638, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.