Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004821.1

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Reverse (-)

102953 .. 111739

Gene Structure 8787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004821.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4515 bp

atgaccggaggccgatgtcacgggaagaagaagaagatgatgggtaggggtgcggacggaggttgcggcaccgaggagaagccttgcccgatttctagggttccgcccaagattccggcgactctgccggaaattcctaaaaagtcggttggggttgatttgtattctcaggccaggaaggccttgtgtgagcggtcgccgtttgatgtggttgaggacgtctcagcctcagctgctgctccttcttcttcttcctcgagtgtggtccccaccaccttgccgagggggttggctagcttcttgtccaggcaatctgatagccggaagcggcacaagaagtcgcattcggcgtcggataagaagcattcccggcagagtgagaagttgaaggggtctagtgtgtgggcagagacagaggagtactttagacccttgacattgcctgatattgaagccttagctgaggtatctgagcttagtaaggtagcagctactaagtgtttttcgattccgaatttgggcgatattcccgagctgaatggaaatgaaaatgtgaatgtgggacttgttttcggtgaggagtgtgtctgtggtcgtaattcgaatgagactgtaaacggtggcaatgctaatgaggttgccgccgaggttgatggtgggaatgctagtgaggttgtttgcaaggatgagattgtgaatggcgggaatgctagtgaggttgttgtcaaggatgagaatgcagatgatgggagtggcaattcggatgtagttgaaaaggttgatgagaatgacggaaatgaaaatggggctgtggaagaggaggacaagacggagcagaatgggcagtcgatggaaattgatagtggtttgcctgaagaggaagaaaaaggctgttctgtttcggattctcccaggggtattgagtggcttttaggttatagaaacaagacttctttagcgacagagcgcccttcaaagaagcgaaaggttcttggtgctgatgcagggttggagaaagtcttaagtgcttctccttgtgatgggaagccatctttatgccatttttgctgcaagggtgatgcaggaaaagagtcaaaccgattgattgtttgtagttcttgtaaggttgtggttcatcagaagtgctatggagtgctagaagatgtggatgcatcatggttatgctcttggtgtaagcacaacactggtgatagtaattcagcaaacccttgtgtgctttgctctaagcagggtggtgctttgaagccagttctgaagaatggtagtagtggtggatctctggagtttgcccacttgttttgctgtcagtggatgccagaggtttatatagaggatatggagaaggtggaacccatcatgaatgtcggaggaataccggaaacccgcagaaagctaatttgtaacatatgcaaggtgaagtggggcgcttgtgttcgatgcagtcatggtgcttgcagaacttcgttccatccaatgtgtgcgagagaggcaagacaaagaatggaaatttgggcaaaatatgggctcaataatgttgaattgaaggctttctgctcaaagcattcagaagtaccaaataacagcaacactgaaccagaggatccttctgtctccattgacaagaattcaaatatctctgacagttctcatgtgacatcatcaccaaaaaaattaaacaagttgaaaattggcggtagaaatggtgataatgttgcagtcagtgttgagacttcagataattctgataaattcagtgatagcagatcacaggagataccaatgaatgataggggtaaattcgagaggagctgtgaggatgtcaatgcatctgggaaccttaaccttacccctattttacagaagctgattgattgcggaaaagttgacgtgaaggatgtggcgttggagattggcgtctcacccaattctttatctgcttcacttgctgatgatagcgtggtccctgatgtgcaatgcagaatagttaaatggcttaaagaccatacgtacttggatctaatgcagaaaaatgtaaaaacaaacttaagaccgtcatttgcatcattggctgagtttggaggttctgatgctccattatcagagtctggtatgtcagatcctgtagctgttaaatcagtacccccacggaggagaacaaaaggtggtgttaggattttaaaggacaacaaagttcttagctcatcagagcaggccttttgtgacaatgggattccgctggacaagattaaattagataaaactatcagtgaaggaccaaaagatttgaaagaagagtccatcagtgatgttgttgagaagaatatgacggtgctcaatgggttacaagattctttgccgacacattcacctgaaatggaaggttattcaactaagcccttaaattgcagccttttgcaaaaaggtcaagaagtggtgactattactcctttgcagaccaactcggtgattgcaaatgtagatccatcgttttcagttgaaaaaccagttcctgaaagcaagaaatcgggggcagaagctcctagttcttatgtccacccgcctatgcagaagacattgtcacagatggagaacggggtgtctctaaagaatccaatacatggttcaagtcaaggagaagtctctcgtgtggaggcatcttcccatgcaagtgtttgctgtaatcatcaaaatacacatccaaaatgttatgatacgatttgtaaaactgatgagaggaatttagaacagttggctaaggctcgtaaactgggagttctagaaatgtctccagaagatgaagtggaaggagaactcatttattatcagcataggttgcaaaacaatataactgcgagaaagcattatactgatgttttgatacgtaatgttgctaagagtctgccgaaagagattgatgcagcacggaatcagaagtgggatgctgtgctggttaaccaatatctttgcgagcttcgagaggcaaagaagcaaggtaggaaggagagacggcataaggaagcacaggctgttttagcagctgcaactgctgcagctgctgcctcttctaggatttcatcatttaggaaagatgtcgttgatgaacacccccatcaggagaatgtggtgaagctgagcactttcagtgggaggtccagcttttcctcacagatgataccacgggcaaaagagacatttccaagggtggctgtccctagagtttctgtggaaaagcactctggtgcagttaattcaggctcagatatctctaaagaacatcctaggtcatgtgatatctgcagacgttctgagacgatgttaaacccgattttagtctgttccagttgcaaggttgctgttcacttggattgctatcgtagtgctagagaatctacaggtccatggtactgtgaattatgtgaagacaaagctactgccaatgtttgggagaaagagcatttaactgcagaatgtggtttatgcggtgggaaaactggtgcttttaggaaatcctctgatggtcaatgggtccatgccttctgtgctgagtgggtctttgagtcaacattcaaaaggggacaagtatcactgattgatggaatggacacagtttcaaagggccttgatttctgttatatctgccgacgcaaatttggtgtctgcataaagtgcagctatggccattgtcaggcaacatttcatccctcgtgtggtagaagttctgatttttatatgaatgtaaaaactctcagtggcaagcagcaacacaaggcatactgtgagaggcatagccttgagcagagggtgaaggctgatacacaaaaacatggaatggaggaattaaagaacctctatacaataagggctgagctggagagattacgccttatttgcgaaagaattatcaaacgggaaaaagtaaagagggaattactcatttgttcacatgaccttctcgctgtgaaaagagatcatgttgcccgttccgtgcttgttaacagtcctttcttgctaccggatgctagttctgaatcagcaacaacttctcttaaggcgcagacagatgattacaggtcatgcagtgagacatttcaaagatcagatgatgtgactgtagatagtacaatttctgttaggcacaggactagagttcctataactattgataacgaccaaaggacagatgatgacagctccacatcccaaaatcaatttacccacaatctttcggataggatgcaattttctgagaaacagattccattcagaccttctgccgcgaattgtaatctttcagaagatggtggatacaggtcaaaatctaagaagcatgccgagatgttttcgaaagaactggtgatgacatcagatcaggcatcggtgaaaaatatgctattacccaaaggatatgcatatgtacctgctgattgcattccaaatgagaagcaggccaaccaggatacttgttctggtgaacgaccagaaggagatgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

1504

Amino Acids

165.08

Weight (kDa)

6.73

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	4447
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	2 cut(s)	2639, 3462
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	1 cut(s)	4298
AclWI	GGATC	6 cut(s)	1303, 1616, 1629, 2043, 2132, 2495
AcoI	YGGCCR	1 cut(s)	3697
AcsI	RAATTY	8 cut(s)	132, 514, 1527, 1645, 1769, 1817, 2758, 3668
AcuI	CTGAAG	3 cut(s)	894, 1295, 1737
AcyI	GRCGYC	3 cut(s)	219, 350, 1935
AfaI	GTAC	7 cut(s)	422, 1593, 2030, 2160, 3425, 4141, 4437
AflII	CTTAAG	3 cut(s)	1021, 2065, 4067
AjiI	CACGTC	1 cut(s)	1909
AjnI	CCWGG	4 cut(s)	173, 305, 911, 4473
AjuI	GAANNNNNNNTTGG	4 cut(s)	1513, 1545, 2626, 2658
AleI	CACNNNNGTG	1 cut(s)	3258
Alw21I	GWGCWC	2 cut(s)	2355, 3158
AlwI	GGATC	6 cut(s)	1303, 1616, 1629, 2043, 2132, 2495
AlwNI	CAGNNNCTG	6 cut(s)	236, 1885, 2126, 2141, 2531, 3077
Ama87I	CYCGRG	2 cut(s)	256, 530
AoxI	GGCC	7 cut(s)	10, 171, 180, 2232, 3637, 3697, 4467
ApoI	RAATTY	8 cut(s)	132, 514, 1527, 1645, 1769, 1817, 2758, 3668
ArsI	GACNNNNNNTTYG	2 cut(s)	3660, 3692
Asp700I	GAANNNNTTC	1 cut(s)	1568
AspA2I	CCTAGG	1 cut(s)	3299
AspLEI	GCGC	3 cut(s)	969, 1448, 4075
AspS9I	GGNCC	7 cut(s)	265, 1981, 2294, 3171, 3416, 3547, 3637
AsuC2I	CCSGG	1 cut(s)	370
AsuII	TTCGAA	2 cut(s)	602, 4364
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	2 cut(s)	256, 530
AvaII	GGWCC	6 cut(s)	265, 1981, 2294, 3171, 3416, 3547
AvrII	CCTAGG	1 cut(s)	3299
BalI	TGGCCA	1 cut(s)	3699
BamHI	GGATCC	1 cut(s)	1621
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	1548
BauI	CACGAG	2 cut(s)	2664, 3724
BbsI	GAAGAC	2 cut(s)	2597, 3447
Bbv12I	GWGCWC	2 cut(s)	2355, 3158
BbvCI	CCTCAGC	2 cut(s)	229, 462
BceAI	ACGGC	2 cut(s)	184, 3044
BciT130I	CCWGG	4 cut(s)	175, 307, 913, 4475
BciVI	GTATCC	2 cut(s)	4319, 4471
BcnI	CCSGG	1 cut(s)	370
BfmI	CTRYAG	6 cut(s)	2142, 3069, 3316, 3411, 3483, 4131
BfoI	RGCGCY	2 cut(s)	970, 1449
BfrI	CTTAAG	3 cut(s)	1021, 2065, 4067
BfuAI	ACCTGC	1 cut(s)	4447
BfuI	GTATCC	2 cut(s)	4319, 4471
BglI	GCCNNNNNGGC	1 cut(s)	179
BlnI	CCTAGG	1 cut(s)	3299
BlpI	GCTNAGC	2 cut(s)	3152, 3885
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	5 cut(s)	175, 307, 370, 913, 4475
Bme18I	GGWCC	6 cut(s)	265, 1981, 2294, 3171, 3416, 3547
BmeT110I	CYCGRG	2 cut(s)	256, 530
BmgBI	CACGTC	1 cut(s)	1909
BmgT120I	GGNCC	7 cut(s)	265, 1981, 2294, 3171, 3416, 3547, 3637
BmiI	GGNNCC	8 cut(s)	70, 102, 267, 1371, 1623, 1856, 1983, 3548
BmrFI	CCNGG	5 cut(s)	175, 307, 370, 913, 4475
BmrI	ACTGGG	1 cut(s)	2798
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	2798
BpiI	GAAGAC	2 cut(s)	2597, 3447
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	3 cut(s)	1322, 2793, 3911
Bpu10I	CCTNAGC	4 cut(s)	229, 457, 462, 2775
Bpu1102I	GCTNAGC	2 cut(s)	3152, 3885
Bpu14I	TTCGAA	2 cut(s)	602, 4364
BpuEI	CTTGAG	1 cut(s)	3833
BpuMI	CCSGG	1 cut(s)	370
BsaAI	YACGTR	2 cut(s)	2028, 2903
BsaBI	GATNNNNATC	1 cut(s)	3390
BsaHI	GRCGYC	3 cut(s)	219, 350, 1935
BsaWI	WCCGGW	3 cut(s)	5, 1396, 4033
BsaXI	ACNNNNNCTCC	2 cut(s)	2449, 2479
Bse1I	ACTGG	7 cut(s)	1210, 1268, 2525, 2793, 3360, 3517, 4377
Bse3DI	GCAATG	3 cut(s)	437, 631, 2000
Bse8I	GATNNNNATC	1 cut(s)	3390
BseBI	CCWGG	4 cut(s)	175, 307, 913, 4475
BseJI	GATNNNNATC	1 cut(s)	3390
BseMI	GCAATG	3 cut(s)	437, 631, 2000
BseNI	ACTGG	7 cut(s)	1210, 1268, 2525, 2793, 3360, 3517, 4377
BseRI	GAGGAG	6 cut(s)	89, 431, 593, 833, 1840, 2185
BsgI	GTGCAG	2 cut(s)	3282, 3709
Bsh1236I	CGCG	1 cut(s)	4298
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	7 cut(s)	12, 173, 182, 2234, 3639, 3699, 4469
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	2 cut(s)	2355, 3158
BsiHKCI	CYCGRG	2 cut(s)	256, 530
BsiSI	CCGG	7 cut(s)	6, 116, 128, 322, 370, 1397, 4034
BslFI	GGGAC	5 cut(s)	251, 576, 1967, 3215, 3609
BsmBI	CGTCTC	4 cut(s)	226, 1942, 3019, 3323
BsmFI	GGGAC	5 cut(s)	251, 576, 1967, 3215, 3609
BsmI	GAATGC	7 cut(s)	343, 364, 667, 712, 742, 1582, 4449
BsnI	GGCC	7 cut(s)	12, 173, 182, 2234, 3639, 3699, 4469
BsoBI	CYCGRG	2 cut(s)	256, 530
Bsp119I	TTCGAA	2 cut(s)	602, 4364
Bsp1286I	GDGCHC	3 cut(s)	1548, 2355, 3158
Bsp143I	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
Bsp1720I	GCTNAGC	2 cut(s)	3152, 3885
Bsp19I	CCATGG	1 cut(s)	3419
BspANI	GGCC	7 cut(s)	12, 173, 182, 2234, 3639, 3699, 4469
BspFNI	CGCG	1 cut(s)	4298
BspHI	TCATGA	1 cut(s)	1377
BspLI	GGNNCC	8 cut(s)	70, 102, 267, 1371, 1623, 1856, 1983, 3548
BspMAI	CTGCAG	3 cut(s)	3073, 3320, 3487
BspMI	ACCTGC	1 cut(s)	4447
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	6 cut(s)	1303, 1616, 1629, 2043, 2132, 2495
BspT104I	TTCGAA	2 cut(s)	602, 4364
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	3 cut(s)	1021, 2065, 4067
BsrBI	CCGCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	437, 631, 2000
BsrI	ACTGG	7 cut(s)	1210, 1268, 2525, 2793, 3360, 3517, 4377
BssMI	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
BssNI	GRCGYC	3 cut(s)	219, 350, 1935
BssSI	CACGAG	2 cut(s)	2664, 3724
BssT1I	CCWWGG	3 cut(s)	3218, 3299, 3419
Bst2BI	CACGAG	2 cut(s)	2664, 3724
Bst2UI	CCWGG	4 cut(s)	175, 307, 913, 4475
Bst6I	CTCTTC	4 cut(s)	810, 870, 2307, 3088
BstACI	GRCGYC	3 cut(s)	219, 350, 1935
BstAFI	CTTAAG	3 cut(s)	1021, 2065, 4067
BstAPI	GCANNNNNTGC	4 cut(s)	2854, 3068, 3077, 3687
BstBAI	YACGTR	2 cut(s)	2028, 2903
BstBI	TTCGAA	2 cut(s)	602, 4364
BstC8I	GCNNGC	7 cut(s)	295, 1474, 2232, 2990, 3776, 4350, 4467
BstDSI	CCRYGG	3 cut(s)	2165, 3197, 3419
BstENI	CCTNNNNNAGG	2 cut(s)	280, 3085
BstFNI	CGCG	1 cut(s)	4298
BstH2I	RGCGCY	2 cut(s)	970, 1449
BstHHI	GCGC	3 cut(s)	969, 1448, 4075
BstKTI	GATC	9 cut(s)	1298, 1624, 1787, 2038, 2140, 2503, 3991, 4118, 4390
BstMBI	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
BstMCI	CGRYCG	1 cut(s)	197
BstNI	CCWGG	4 cut(s)	175, 307, 913, 4475
BstNSI	RCATGY	1 cut(s)	4352
BstSCI	CCNGG	5 cut(s)	173, 305, 368, 911, 4473
BstSFI	CTRYAG	6 cut(s)	2142, 3069, 3316, 3411, 3483, 4131
BstSNI	TACGTA	2 cut(s)	2028, 2903
BstUI	CGCG	1 cut(s)	4298
BstV2I	GAAGAC	2 cut(s)	2597, 3447
BstX2I	RGATCY	5 cut(s)	1295, 1621, 2035, 2137, 2500
BstYI	RGATCY	5 cut(s)	1295, 1621, 2035, 2137, 2500
BsuI	GTATCC	2 cut(s)	4319, 4471
BsuRI	GGCC	7 cut(s)	12, 173, 182, 2234, 3639, 3699, 4469
BtgI	CCRYGG	3 cut(s)	2165, 3197, 3419
BtrI	CACGTC	1 cut(s)	1909
BtsI	GCAGTG	1 cut(s)	4105
BveI	ACCTGC	1 cut(s)	4447
Cac8I	GCNNGC	7 cut(s)	295, 1474, 2232, 2990, 3776, 4350, 4467
CaiI	CAGNNNCTG	6 cut(s)	236, 1885, 2126, 2141, 2531, 3077
CciI	TCATGA	1 cut(s)	1377
CfoI	GCGC	3 cut(s)	969, 1448, 4075
Cfr13I	GGNCC	7 cut(s)	265, 1981, 2294, 3171, 3416, 3547, 3637
CseI	GACGC	3 cut(s)	339, 1924, 3672
Csp6I	GTAC	7 cut(s)	421, 1592, 2029, 2159, 3424, 4140, 4436
CspCI	CAANNNNNGTGG	2 cut(s)	1301, 1336
CviQI	GTAC	7 cut(s)	421, 1592, 2029, 2159, 3424, 4140, 4436
DpnI	GATC	9 cut(s)	1297, 1623, 1786, 2037, 2139, 2502, 3990, 4117, 4389
DpnII	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
DraI	TTTAAA	1 cut(s)	2199
EaeI	YGGCCR	1 cut(s)	3697
Eam1104I	CTCTTC	4 cut(s)	810, 870, 2307, 3088
EarI	CTCTTC	4 cut(s)	810, 870, 2307, 3088
EciI	GGCGGA	1 cut(s)	93
Eco105I	TACGTA	2 cut(s)	2028, 2903
Eco130I	CCWWGG	3 cut(s)	3218, 3299, 3419
Eco147I	AGGCCT	2 cut(s)	182, 2234
Eco24I	GRGCYC	1 cut(s)	1548
Eco32I	GATATC	2 cut(s)	3283, 3313
Eco47I	GGWCC	6 cut(s)	265, 1981, 2294, 3171, 3416, 3547
Eco57I	CTGAAG	3 cut(s)	894, 1295, 1737
Eco88I	CYCGRG	2 cut(s)	256, 530
EcoNI	CCTNNNNNAGG	2 cut(s)	280, 3085
EcoO109I	RGGNCCY	1 cut(s)	3637
EcoRI	GAATTC	1 cut(s)	1645
EcoRII	CCWGG	4 cut(s)	173, 305, 911, 4473
EcoRV	GATATC	2 cut(s)	3283, 3313
EcoT14I	CCWWGG	3 cut(s)	3218, 3299, 3419
EcoT22I	ATGCAT	3 cut(s)	1174, 1849, 4432
EcoT38I	GRGCYC	1 cut(s)	1548
ErhI	CCWWGG	3 cut(s)	3218, 3299, 3419
Esp3I	CGTCTC	4 cut(s)	226, 1942, 3019, 3323
FaqI	GGGAC	5 cut(s)	251, 576, 1967, 3215, 3609
FauI	CCCGC	3 cut(s)	695, 1412, 2586
FauNDI	CATATG	2 cut(s)	1427, 4432
FriOI	GRGCYC	1 cut(s)	1548
GlaI	GCGC	3 cut(s)	968, 1447, 4074
GsuI	CTGGAG	3 cut(s)	1322, 2793, 3911
HaeII	RGCGCY	2 cut(s)	970, 1449
HaeIII	GGCC	7 cut(s)	12, 173, 182, 2234, 3639, 3699, 4469
HapII	CCGG	7 cut(s)	6, 116, 128, 322, 370, 1397, 4034
HgaI	GACGC	3 cut(s)	339, 1924, 3672
HhaI	GCGC	3 cut(s)	969, 1448, 4075
Hin1I	GRCGYC	3 cut(s)	219, 350, 1935
Hin6I	GCGC	3 cut(s)	967, 1446, 4073
HinP1I	GCGC	3 cut(s)	967, 1446, 4073
HincII	GTYRAC	4 cut(s)	1906, 2974, 3582, 4015
HindII	GTYRAC	4 cut(s)	1906, 2974, 3582, 4015
HpaI	GTTAAC	2 cut(s)	2974, 4015
HpaII	CCGG	7 cut(s)	6, 116, 128, 322, 370, 1397, 4034
Hpy99I	CGWCG	2 cut(s)	355, 3666
HpyCH4IV	ACGT	5 cut(s)	219, 1908, 2027, 2902, 3322
HpySE526I	ACGT	5 cut(s)	219, 1908, 2027, 2902, 3322
Hsp92I	GRCGYC	3 cut(s)	219, 350, 1935
HspAI	GCGC	3 cut(s)	967, 1446, 4073
KspAI	GTTAAC	2 cut(s)	2974, 4015
Kzo9I	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
LmnI	GCTCC	6 cut(s)	244, 832, 1827, 2116, 2563, 4217
MaeII	ACGT	5 cut(s)	219, 1908, 2027, 2902, 3322
MaeIII	GTNAC	8 cut(s)	17, 1421, 1672, 2240, 2361, 2455, 2598, 4126
MalI	GATC	9 cut(s)	1297, 1623, 1786, 2037, 2139, 2502, 3990, 4117, 4389
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
MflI	RGATCY	5 cut(s)	1295, 1621, 2035, 2137, 2500
MhlI	GDGCHC	3 cut(s)	1548, 2355, 3158
MlsI	TGGCCA	1 cut(s)	3699
MluNI	TGGCCA	1 cut(s)	3699
MlyI	GAGTC	6 cut(s)	115, 1100, 2132, 2324, 2926, 3587
MmeI	TCCRAC	4 cut(s)	333, 990, 1366, 1905
Mox20I	TGGCCA	1 cut(s)	3699
Mph1103I	ATGCAT	3 cut(s)	1174, 1849, 4432
MroXI	GAANNNNTTC	1 cut(s)	1568
MscI	TGGCCA	1 cut(s)	3699
MslI	CAYNNNNRTG	4 cut(s)	1054, 1180, 2688, 3258
Msp20I	TGGCCA	1 cut(s)	3699
MspA1I	CMGCKG	4 cut(s)	233, 2257, 3059, 3074
MspCI	CTTAAG	3 cut(s)	1021, 2065, 4067
MspI	CCGG	7 cut(s)	6, 116, 128, 322, 370, 1397, 4034
MspR9I	CCNGG	5 cut(s)	175, 307, 370, 913, 4475
Mva1269I	GAATGC	7 cut(s)	343, 364, 667, 712, 742, 1582, 4449
MvaI	CCWGG	4 cut(s)	175, 307, 913, 4475
MvnI	CGCG	1 cut(s)	4298
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	3419
NdeI	CATATG	2 cut(s)	1427, 4432
NdeII	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
NheI	GCTAGC	1 cut(s)	293
NlaIV	GGNNCC	8 cut(s)	70, 102, 267, 1371, 1623, 1856, 1983, 3548
NmeAIII	GCCGAG	3 cut(s)	306, 670, 4378
NmuCI	GTSAC	6 cut(s)	17, 1672, 2240, 2455, 2598, 4126
NsiI	ATGCAT	3 cut(s)	1174, 1849, 4432
NspI	RCATGY	1 cut(s)	4352
NspV	TTCGAA	2 cut(s)	602, 4364
OliI	CACNNNNGTG	1 cut(s)	3258
PaeI	GCATGC	1 cut(s)	4352
PaeR7I	CTCGAG	1 cut(s)	256
PagI	TCATGA	1 cut(s)	1377
PasI	CCCWGGG	1 cut(s)	912
PceI	AGGCCT	2 cut(s)	182, 2234
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	7 cut(s)	343, 364, 667, 712, 742, 1582, 4449
PdmI	GAANNNNTTC	1 cut(s)	1568
PflFI	GACNNNGTC	1 cut(s)	2596
PflMI	CCANNNNNTGG	2 cut(s)	2639, 3462
PleI	GAGTC	6 cut(s)	115, 1099, 2131, 2323, 2925, 3586
PpsI	GAGTC	6 cut(s)	115, 1099, 2131, 2323, 2925, 3586
Ppu21I	YACGTR	2 cut(s)	2028, 2903
Psp6I	CCWGG	4 cut(s)	173, 305, 911, 4473
PspGI	CCWGG	4 cut(s)	173, 305, 911, 4473
PspN4I	GGNNCC	8 cut(s)	70, 102, 267, 1371, 1623, 1856, 1983, 3548
PspPI	GGNCC	7 cut(s)	265, 1981, 2294, 3171, 3416, 3547, 3637
PspXI	VCTCGAGB	1 cut(s)	256
PstI	CTGCAG	3 cut(s)	3073, 3320, 3487
PstNI	CAGNNNCTG	6 cut(s)	236, 1885, 2126, 2141, 2531, 3077
PsuI	RGATCY	5 cut(s)	1295, 1621, 2035, 2137, 2500
PsyI	GACNNNGTC	1 cut(s)	2596
PvuII	CAGCTG	3 cut(s)	233, 3059, 3074
RsaI	GTAC	7 cut(s)	422, 1593, 2030, 2160, 3425, 4141, 4437
RsaNI	GTAC	7 cut(s)	421, 1592, 2029, 2159, 3424, 4140, 4436
RseI	CAYNNNNRTG	4 cut(s)	1054, 1180, 2688, 3258
Sau3AI	GATC	9 cut(s)	1295, 1621, 1784, 2035, 2137, 2500, 3988, 4115, 4387
Sau96I	GGNCC	7 cut(s)	265, 1981, 2294, 3171, 3416, 3547, 3637
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	6 cut(s)	115, 1100, 2132, 2324, 2926, 3587
ScrFI	CCNGG	5 cut(s)	175, 307, 370, 913, 4475
SduI	GDGCHC	3 cut(s)	1548, 2355, 3158
SfcI	CTRYAG	6 cut(s)	2142, 3069, 3316, 3411, 3483, 4131
SfiI	GGCCNNNNNGGCC	1 cut(s)	179
Sfr274I	CTCGAG	1 cut(s)	256
SfuI	TTCGAA	2 cut(s)	602, 4364
SinI	GGWCC	6 cut(s)	265, 1981, 2294, 3171, 3416, 3547
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	4 cut(s)	1054, 1180, 2688, 3258
SmlI	CTYRAG	5 cut(s)	256, 1021, 2065, 3812, 4067
SmoI	CTYRAG	5 cut(s)	256, 1021, 2065, 3812, 4067
SnaBI	TACGTA	2 cut(s)	2028, 2903
SphI	GCATGC	1 cut(s)	4352
SseBI	AGGCCT	2 cut(s)	182, 2234
StuI	AGGCCT	2 cut(s)	182, 2234
StyD4I	CCNGG	5 cut(s)	173, 305, 368, 911, 4473
StyI	CCWWGG	3 cut(s)	3218, 3299, 3419
TaiI	ACGT	5 cut(s)	222, 1911, 2030, 2905, 3325
TaqI	TCGA	8 cut(s)	257, 506, 602, 848, 1456, 1821, 2995, 4364
TatI	WGTACW	2 cut(s)	420, 4139
TauI	GCSGC	4 cut(s)	69, 331, 644, 4298
TseFI	GTSAC	6 cut(s)	17, 1672, 2240, 2455, 2598, 4126
Tsp45I	GTSAC	6 cut(s)	17, 1672, 2240, 2455, 2598, 4126
TspGWI	ACGGA	6 cut(s)	72, 807, 845, 2182, 2959, 3994
Tth111I	GACNNNGTC	1 cut(s)	2596
Van91I	CCANNNNNTGG	2 cut(s)	2639, 3462
Vha464I	CTTAAG	3 cut(s)	1021, 2065, 4067
VpaK11BI	GGWCC	6 cut(s)	265, 1981, 2294, 3171, 3416, 3547
XagI	CCTNNNNNAGG	2 cut(s)	280, 3085
XapI	RAATTY	8 cut(s)	132, 514, 1527, 1645, 1769, 1817, 2758, 3668
XbaI	TCTAGA	1 cut(s)	2797
XceI	RCATGY	1 cut(s)	4352
XhoI	CTCGAG	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	3299
XmnI	GAANNNNTTC	1 cut(s)	1568
ZraI	GACGTC	1 cut(s)	220
ZrmI	AGTACT	1 cut(s)	422
Zsp2I	ATGCAT	3 cut(s)	1174, 1849, 4432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.