Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002313.1

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 7376

Gene Structure 7376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002313.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

aacatatgcaaggtgaagtggggcgcttgtgttcgatgcagtcatggtgcttgcagaacttccttccatccaatgtgtgcgagagaggcaagacaaagaatggaaatttgggcaaaatatgggctcaataatgttgaattgaaggctttctgctcaaagcattcagaagtaccaaataacagcaacactgaaccagaggatccttctgtctccattgacaagaattcaaatatctctgacagttctcatgtgacatcatcaccaaaaaaattaaacaagttgaaaattggcggtagaaatggtgataatgttgcagtcagtgttgagacttcagataattctgataaattcagtgatagcagatcacaggagatacctatgaatgataggggtaaattcgagaggagctgtgaggatgtcaatgcatctgggaaccttaaccttacccctattttacagaagctgattgattgtggaaaagttgacgtgaaggatgtggcgttggagattggcgtctcacccgattctttatctgcttcacttgctgatgatagcgtggtccctgatgtgcaatgcagaataattaaatggcttaaagaccatacctacttggatctaatgcagaaaaatgtaaaaacaaacttaagaccgtcatttgcatcattggccgagtttggaggttctgatgctccattatcagagtctggtatgtcagatccagtagctgttaaatcagtacccccacggaggagaacaaaaggtggtgttaggattttaaaggacaacaaagttcgtagctcatcagagcaggccttttgtgacaatgggattccactggacaagattaaattagataaaactatcagtgaaggaccaaaagatttgaaagaagagtccgtcagtgatgttgttgagaagaatatgacggtgctcaatgggttacaagattctttgccgacacattcacctgaaatggaaggttattcaactaagcccttaaattgcagccttttgcaaaaaggtcaagaagtggtgactattactcctttgcagaccaactcggtgattgcaaatgtagatccatcgttttcagttgaaaaaccagttcctgaaagcaagaaatcgggggcagaagctcctagttcttatgtccacccgcctatgcagaagacattgtcacagatggagaacggggtgtctctaaagaatccaatacatggttcaagtcaaggagaagtctctcgtgtggaggcatcttcccatgcaagtgtttgctgtaatcatcaaaatacacatccaaaatgttatgatacgatttgtaaaactgatgagaggaatttagaacagttggctaaggctcgtaaactgggagttctagaaatgtctccagaagatgaagtggaaggagaactcatttattatcagcataggttgcaaaacaatataactgcgagaaagcattatactgatgttttgatacgtaatgttgctaagagtctgccgaaagagattgatgcagcacggaatcagaagtgggatgctgtgctggttaaccaatatctttgcgagcttcgagaggcaaagaagcaaggtaggaaggagagacggcataaggaagcacaggctgttttagcagctgcaactgctgcagctgctgcctcttctaggatttcatcatttaggaaagatgtcgttgatgaacacccccatcaggagaatgtggtgaagctgagcactttcagtgggaggtccagcttttcctcacagatgataccacgggcaaaagagacatttccaagggtggctgtccctagagtttctgtggaaaagcactctggtgcagttaattcaggctcagatatctctaaagaacatcctaggtcatgtgatatctgcagacgttctgagacgatgttaaacccgattttagtctgttccagttgcaaggttgctgttcacttggattgctatcgtagtgctagagaatctacaggtccatggtactgtgaattatgtgaagacaaagctactgccaatgtttgggagaaagagcatttaactgcagaatgtggtttatgcggtgggaaaactggtgcttttaggaaatcctctgatggtcaatgggtccatgccttctgtgctgagtgggtctttgagtcaacattcaaaaggggacaagtatcactgattgatggaatggacacagtttcaaagggccttgatttctgttatatctgccgacgcaaatttggtgtctgcataaagtgcagctatggccattgtcaggcaacatttcatccctcgtgtggtagaagttctgatttttatatgaatgtaaaaactctcagtggcaagcagcaacacaaggcatactgtgagaggcatagccttgagcagagggtgaaggctgatacacaaaaacatggaatggaggaattaaagaacctctatacaataagggctgagctggagagattacgccttatttgcgaaagaattatcaaacgggaaaaagtaaagagggaattactcatttgttcacatgaccttctcgctgtgaaaagagatcatgttgcccgttccgtgcttgttaacagtcctttcttgctaccggatgctagttctgaatcagcaacaacttctcttaaagcgcagacagatgattacaggtcatgcagtgagacattccaaagatcagatgatgtgactgtagatagtacaatttctgttaggcacaggactagagttcctataactattgataacgaccaaaggacagatgatgacagctccacatcccaaaatcaatttacccacaatctttcggataggatgcaattttctgagaaacagattccattcagaccttctgccgcgaattgtaatctttcagaagatggtggatacaggtcaaaatctaagaagcatgccgagatgttttcgaaagaactggtgatgacatcagatcaggcatcggtgaaaaatatgctattacccaaaggatatgcatatgtacctgctgattgcattccaaatgagaagcaggccaaccaggatacttgttctggtgaacgaccagaaggagatgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

1030

Amino Acids

114.52

Weight (kDa)

8.23

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3025
AccB7I	CCANNNNNTGG	2 cut(s)	1217, 2040
AccII	CGCG	1 cut(s)	2876
AciI	CCGC	4 cut(s)	291, 1157, 2079, 2874
AclWI	GGATC	5 cut(s)	194, 207, 621, 710, 1073
AcoI	YGGCCR	2 cut(s)	666, 2275
AcsI	RAATTY	6 cut(s)	105, 223, 347, 395, 1336, 2246
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	5 cut(s)	171, 738, 2003, 2719, 3015
AfiI	CCNNNNNNNGG	7 cut(s)	747, 1217, 1665, 1711, 2040, 2284, 2306
AflII	CTTAAG	1 cut(s)	643
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	3051
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 1204, 1236
AleI	CACNNNNGTG	1 cut(s)	1836
Alw21I	GWGCWC	2 cut(s)	933, 1736
AlwI	GGATC	5 cut(s)	194, 207, 621, 710, 1073
AlwNI	CAGNNNCTG	5 cut(s)	463, 704, 725, 1109, 1655
AoxI	GGCC	5 cut(s)	666, 810, 2215, 2275, 3045
ApoI	RAATTY	6 cut(s)	105, 223, 347, 395, 1336, 2246
ArsI	GACNNNNNNTTYG	2 cut(s)	2238, 2270
Asp700I	GAANNNNTTC	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	1877
AspLEI	GCGC	2 cut(s)	26, 2653
AspS9I	GGNCC	6 cut(s)	559, 872, 1749, 1994, 2125, 2215
AsuII	TTCGAA	1 cut(s)	2942
AvaII	GGWCC	5 cut(s)	559, 872, 1749, 1994, 2125
AvrII	CCTAGG	1 cut(s)	1877
BalI	TGGCCA	1 cut(s)	2277
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	1242, 2302
BbsI	GAAGAC	2 cut(s)	1175, 2025
Bbv12I	GWGCWC	2 cut(s)	933, 1736
BccI	CCATC	8 cut(s)	75, 1090, 1177, 1716, 2108, 2186, 2891, 3080
BceAI	ACGGC	1 cut(s)	1622
BciT130I	CCWGG	1 cut(s)	3053
BciVI	GTATCC	2 cut(s)	2897, 3049
BfaI	CTAG	8 cut(s)	1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
BfmI	CTRYAG	5 cut(s)	1647, 1894, 1989, 2061, 2709
BfoI	RGCGCY	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	643
BfuAI	ACCTGC	1 cut(s)	3025
BfuI	GTATCC	2 cut(s)	2897, 3049
BlnI	CCTAGG	1 cut(s)	1877
BlpI	GCTNAGC	2 cut(s)	1730, 2463
Bme1390I	CCNGG	1 cut(s)	3053
Bme18I	GGWCC	5 cut(s)	559, 872, 1749, 1994, 2125
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	6 cut(s)	559, 872, 1749, 1994, 2125, 2215
BmiI	GGNNCC	4 cut(s)	201, 434, 561, 2126
BmrFI	CCNGG	1 cut(s)	3053
BmrI	ACTGGG	1 cut(s)	1376
BmuI	ACTGGG	1 cut(s)	1376
BpiI	GAAGAC	2 cut(s)	1175, 2025
BpmI	CTGGAG	2 cut(s)	1371, 2489
Bpu10I	CCTNAGC	1 cut(s)	1353
Bpu1102I	GCTNAGC	2 cut(s)	1730, 2463
Bpu14I	TTCGAA	1 cut(s)	2942
BpuEI	CTTGAG	1 cut(s)	2411
BsaAI	YACGTR	1 cut(s)	1481
BsaBI	GATNNNNATC	1 cut(s)	1968
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	5 cut(s)	743, 1775, 1796, 1877, 1997
BsaWI	WCCGGW	1 cut(s)	2611
BsaXI	ACNNNNNCTCC	2 cut(s)	1027, 1057
Bsc4I	CCNNNNNNNGG	7 cut(s)	747, 1217, 1665, 1711, 2040, 2284, 2306
Bse1I	ACTGG	7 cut(s)	719, 840, 1103, 1371, 1938, 2095, 2955
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	1968
BseBI	CCWGG	1 cut(s)	3053
BseDI	CCNNGG	5 cut(s)	743, 1775, 1796, 1877, 1997
BseJI	GATNNNNATC	1 cut(s)	1968
BseLI	CCNNNNNNNGG	7 cut(s)	747, 1217, 1665, 1711, 2040, 2284, 2306
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	7 cut(s)	1721, 1869, 1896, 2133, 2359, 2454, 2835
BseNI	ACTGG	7 cut(s)	719, 840, 1103, 1371, 1938, 2095, 2955
BseRI	GAGGAG	2 cut(s)	418, 763
BsgI	GTGCAG	2 cut(s)	1860, 2287
Bsh1236I	CGCG	1 cut(s)	2876
BshFI	GGCC	5 cut(s)	668, 812, 2217, 2277, 3047
BsiHKAI	GWGCWC	2 cut(s)	933, 1736
BsiSI	CCGG	1 cut(s)	2612
BslFI	GGGAC	3 cut(s)	545, 1793, 2187
BslI	CCNNNNNNNGG	7 cut(s)	747, 1217, 1665, 1711, 2040, 2284, 2306
BsmBI	CGTCTC	3 cut(s)	520, 1597, 1901
BsmFI	GGGAC	3 cut(s)	545, 1793, 2187
BsmI	GAATGC	2 cut(s)	160, 3027
BsnI	GGCC	5 cut(s)	668, 812, 2217, 2277, 3047
Bsp119I	TTCGAA	1 cut(s)	2942
Bsp1286I	GDGCHC	3 cut(s)	126, 933, 1736
Bsp143I	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
Bsp1720I	GCTNAGC	2 cut(s)	1730, 2463
Bsp19I	CCATGG	1 cut(s)	1997
BspACI	CCGC	4 cut(s)	291, 1157, 2079, 2874
BspANI	GGCC	5 cut(s)	668, 812, 2217, 2277, 3047
BspCNI	CTCAG	7 cut(s)	1722, 1868, 1897, 2134, 2358, 2455, 2836
BspFNI	CGCG	1 cut(s)	2876
BspLI	GGNNCC	4 cut(s)	201, 434, 561, 2126
BspMAI	CTGCAG	3 cut(s)	1651, 1898, 2065
BspMI	ACCTGC	1 cut(s)	3025
BspPI	GGATC	5 cut(s)	194, 207, 621, 710, 1073
BspT104I	TTCGAA	1 cut(s)	2942
BspTI	CTTAAG	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	578
BsrI	ACTGG	7 cut(s)	719, 840, 1103, 1371, 1938, 2095, 2955
BssECI	CCNNGG	5 cut(s)	743, 1775, 1796, 1877, 1997
BssMI	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
BssNI	GRCGYC	1 cut(s)	513
BssSI	CACGAG	2 cut(s)	1242, 2302
BssT1I	CCWWGG	3 cut(s)	1796, 1877, 1997
Bst2BI	CACGAG	2 cut(s)	1242, 2302
Bst2UI	CCWGG	1 cut(s)	3053
Bst4CI	ACNGT	9 cut(s)	242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
Bst6I	CTCTTC	2 cut(s)	885, 1666
BstACI	GRCGYC	1 cut(s)	513
BstAFI	CTTAAG	1 cut(s)	643
BstAPI	GCANNNNNTGC	4 cut(s)	1432, 1646, 1655, 2265
BstBAI	YACGTR	1 cut(s)	1481
BstBI	TTCGAA	1 cut(s)	2942
BstC8I	GCNNGC	6 cut(s)	52, 810, 1568, 2354, 2928, 3045
BstDSI	CCRYGG	3 cut(s)	743, 1775, 1997
BstENI	CCTNNNNNAGG	1 cut(s)	1663
BstFNI	CGCG	1 cut(s)	2876
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 2653
BstKTI	GATC	8 cut(s)	202, 365, 616, 718, 1081, 2569, 2696, 2968
BstMBI	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
BstNI	CCWGG	1 cut(s)	3053
BstNSI	RCATGY	1 cut(s)	2930
BstSCI	CCNGG	1 cut(s)	3051
BstSFI	CTRYAG	5 cut(s)	1647, 1894, 1989, 2061, 2709
BstSNI	TACGTA	1 cut(s)	1481
BstUI	CGCG	1 cut(s)	2876
BstV2I	GAAGAC	2 cut(s)	1175, 2025
BstX2I	RGATCY	4 cut(s)	199, 613, 715, 1078
BstYI	RGATCY	4 cut(s)	199, 613, 715, 1078
BsuI	GTATCC	2 cut(s)	2897, 3049
BsuRI	GGCC	5 cut(s)	668, 812, 2217, 2277, 3047
BtgI	CCRYGG	3 cut(s)	743, 1775, 1997
BtrI	CACGTC	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	2683
BveI	ACCTGC	1 cut(s)	3025
Cac8I	GCNNGC	6 cut(s)	52, 810, 1568, 2354, 2928, 3045
CaiI	CAGNNNCTG	5 cut(s)	463, 704, 725, 1109, 1655
CfoI	GCGC	2 cut(s)	26, 2653
Cfr13I	GGNCC	6 cut(s)	559, 872, 1749, 1994, 2125, 2215
CseI	GACGC	2 cut(s)	502, 2250
Csp6I	GTAC	5 cut(s)	170, 737, 2002, 2718, 3014
CviQI	GTAC	5 cut(s)	170, 737, 2002, 2718, 3014
DpnI	GATC	8 cut(s)	201, 364, 615, 717, 1080, 2568, 2695, 2967
DpnII	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
DraI	TTTAAA	1 cut(s)	777
EaeI	YGGCCR	2 cut(s)	666, 2275
Eam1104I	CTCTTC	2 cut(s)	885, 1666
EarI	CTCTTC	2 cut(s)	885, 1666
Eco105I	TACGTA	1 cut(s)	1481
Eco130I	CCWWGG	3 cut(s)	1796, 1877, 1997
Eco147I	AGGCCT	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	2 cut(s)	1861, 1891
Eco47I	GGWCC	5 cut(s)	559, 872, 1749, 1994, 2125
Eco57I	CTGAAG	1 cut(s)	315
EcoNI	CCTNNNNNAGG	1 cut(s)	1663
EcoO109I	RGGNCCY	1 cut(s)	2215
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	3051
EcoRV	GATATC	2 cut(s)	1861, 1891
EcoT14I	CCWWGG	3 cut(s)	1796, 1877, 1997
EcoT22I	ATGCAT	2 cut(s)	427, 3010
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	3 cut(s)	1796, 1877, 1997
Esp3I	CGTCTC	3 cut(s)	520, 1597, 1901
FaqI	GGGAC	3 cut(s)	545, 1793, 2187
FauI	CCCGC	1 cut(s)	1164
FauNDI	CATATG	2 cut(s)	5, 3010
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	8 cut(s)	1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
GlaI	GCGC	2 cut(s)	25, 2652
GsuI	CTGGAG	2 cut(s)	1371, 2489
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	668, 812, 2217, 2277, 3047
HapII	CCGG	1 cut(s)	2612
HgaI	GACGC	2 cut(s)	502, 2250
HhaI	GCGC	2 cut(s)	26, 2653
Hin1I	GRCGYC	1 cut(s)	513
Hin6I	GCGC	2 cut(s)	24, 2651
HinP1I	GCGC	2 cut(s)	24, 2651
HincII	GTYRAC	4 cut(s)	484, 1552, 2160, 2593
HindII	GTYRAC	4 cut(s)	484, 1552, 2160, 2593
HpaI	GTTAAC	2 cut(s)	1552, 2593
HpaII	CCGG	1 cut(s)	2612
Hpy166II	GTNNAC	9 cut(s)	484, 1153, 1364, 1552, 1957, 2160, 2540, 2593, 3071
Hpy188III	TCNNGA	7 cut(s)	400, 1025, 1109, 1376, 1388, 1574, 1712
Hpy8I	GTNNAC	9 cut(s)	484, 1153, 1364, 1552, 1957, 2160, 2540, 2593, 3071
Hpy99I	CGWCG	1 cut(s)	2244
HpyCH4III	ACNGT	9 cut(s)	242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
HpyCH4IV	ACGT	3 cut(s)	486, 1480, 1900
HpySE526I	ACGT	3 cut(s)	486, 1480, 1900
Hsp92I	GRCGYC	1 cut(s)	513
HspAI	GCGC	2 cut(s)	24, 2651
KspAI	GTTAAC	2 cut(s)	1552, 2593
Kzo9I	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
LmnI	GCTCC	4 cut(s)	405, 694, 1141, 2795
MaeI	CTAG	8 cut(s)	1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
MaeII	ACGT	3 cut(s)	486, 1480, 1900
MaeIII	GTNAC	6 cut(s)	250, 818, 939, 1033, 1176, 2704
MalI	GATC	8 cut(s)	201, 364, 615, 717, 1080, 2568, 2695, 2967
MboI	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
MboII	GAAGA	8 cut(s)	902, 928, 1180, 1248, 1403, 1653, 2030, 2906
MflI	RGATCY	4 cut(s)	199, 613, 715, 1078
MhlI	GDGCHC	3 cut(s)	126, 933, 1736
MlsI	TGGCCA	1 cut(s)	2277
MluNI	TGGCCA	1 cut(s)	2277
MlyI	GAGTC	4 cut(s)	710, 902, 1504, 2165
MmeI	TCCRAC	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	2277
Mph1103I	ATGCAT	2 cut(s)	427, 3010
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	2277
MslI	CAYNNNNRTG	2 cut(s)	1266, 1836
Msp20I	TGGCCA	1 cut(s)	2277
MspA1I	CMGCKG	2 cut(s)	1637, 1652
MspCI	CTTAAG	1 cut(s)	643
MspI	CCGG	1 cut(s)	2612
MspR9I	CCNGG	1 cut(s)	3053
Mva1269I	GAATGC	2 cut(s)	160, 3027
MvaI	CCWGG	1 cut(s)	3053
MvnI	CGCG	1 cut(s)	2876
NcoI	CCATGG	1 cut(s)	1997
NdeI	CATATG	2 cut(s)	5, 3010
NdeII	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
NlaIV	GGNNCC	4 cut(s)	201, 434, 561, 2126
NmeAIII	GCCGAG	2 cut(s)	694, 2956
NmuCI	GTSAC	5 cut(s)	250, 818, 1033, 1176, 2704
NsiI	ATGCAT	2 cut(s)	427, 3010
NspI	RCATGY	1 cut(s)	2930
NspV	TTCGAA	1 cut(s)	2942
OliI	CACNNNNGTG	1 cut(s)	1836
PaeI	GCATGC	1 cut(s)	2930
PceI	AGGCCT	1 cut(s)	812
PctI	GAATGC	2 cut(s)	160, 3027
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	8 cut(s)	524, 829, 947, 1207, 1525, 1985, 2627, 2854
PflFI	GACNNNGTC	1 cut(s)	1174
PflMI	CCANNNNNTGG	2 cut(s)	1217, 2040
PleI	GAGTC	4 cut(s)	709, 901, 1503, 2164
PpsI	GAGTC	4 cut(s)	709, 901, 1503, 2164
Ppu21I	YACGTR	1 cut(s)	1481
Psp6I	CCWGG	1 cut(s)	3051
PspGI	CCWGG	1 cut(s)	3051
PspN4I	GGNNCC	4 cut(s)	201, 434, 561, 2126
PspPI	GGNCC	6 cut(s)	559, 872, 1749, 1994, 2125, 2215
PstI	CTGCAG	3 cut(s)	1651, 1898, 2065
PstNI	CAGNNNCTG	5 cut(s)	463, 704, 725, 1109, 1655
PsuI	RGATCY	4 cut(s)	199, 613, 715, 1078
PsyI	GACNNNGTC	1 cut(s)	1174
PvuII	CAGCTG	2 cut(s)	1637, 1652
RsaI	GTAC	5 cut(s)	171, 738, 2003, 2719, 3015
RsaNI	GTAC	5 cut(s)	170, 737, 2002, 2718, 3014
RseI	CAYNNNNRTG	2 cut(s)	1266, 1836
Sau3AI	GATC	8 cut(s)	199, 362, 613, 715, 1078, 2566, 2693, 2965
Sau96I	GGNCC	6 cut(s)	559, 872, 1749, 1994, 2125, 2215
SchI	GAGTC	4 cut(s)	710, 902, 1504, 2165
ScrFI	CCNGG	1 cut(s)	3053
SduI	GDGCHC	3 cut(s)	126, 933, 1736
SfcI	CTRYAG	5 cut(s)	1647, 1894, 1989, 2061, 2709
SfuI	TTCGAA	1 cut(s)	2942
SinI	GGWCC	5 cut(s)	559, 872, 1749, 1994, 2125
SmiMI	CAYNNNNRTG	2 cut(s)	1266, 1836
SmlI	CTYRAG	2 cut(s)	643, 2390
SmoI	CTYRAG	2 cut(s)	643, 2390
SnaBI	TACGTA	1 cut(s)	1481
SphI	GCATGC	1 cut(s)	2930
SseBI	AGGCCT	1 cut(s)	812
SsiI	CCGC	4 cut(s)	291, 1157, 2079, 2874
SspMI	CTAG	8 cut(s)	1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
StuI	AGGCCT	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	3051
StyI	CCWWGG	3 cut(s)	1796, 1877, 1997
TaaI	ACNGT	9 cut(s)	242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
TaiI	ACGT	3 cut(s)	489, 1483, 1903
TaqI	TCGA	4 cut(s)	34, 399, 1573, 2942
TatI	WGTACW	1 cut(s)	2717
TauI	GCSGC	1 cut(s)	2876
TfiI	GAWTC	8 cut(s)	524, 829, 947, 1207, 1525, 1985, 2627, 2854
TseFI	GTSAC	5 cut(s)	250, 818, 1033, 1176, 2704
Tsp45I	GTSAC	5 cut(s)	250, 818, 1033, 1176, 2704
TspDTI	ATGAA	6 cut(s)	395, 1410, 1662, 1713, 2285, 2345
TspGWI	ACGGA	4 cut(s)	760, 886, 1537, 2572
Tth111I	GACNNNGTC	1 cut(s)	1174
Van91I	CCANNNNNTGG	2 cut(s)	1217, 2040
Vha464I	CTTAAG	1 cut(s)	643
VpaK11BI	GGWCC	5 cut(s)	559, 872, 1749, 1994, 2125
XagI	CCTNNNNNAGG	1 cut(s)	1663
XapI	RAATTY	6 cut(s)	105, 223, 347, 395, 1336, 2246
XbaI	TCTAGA	1 cut(s)	1375
XceI	RCATGY	1 cut(s)	2930
XmaJI	CCTAGG	1 cut(s)	1877
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	8 cut(s)	1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
Zsp2I	ATGCAT	2 cut(s)	427, 3010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.