Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Forward (+)

14211128 .. 14214947

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14780.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCATCAACTCGTATTGCTGGTGCTCCTGTCAATTTTTGGGAGAAAGATCATTTTGTTGCAGAATGTGGTTTATGTGGTGGCAAAACAGGTGCATTTAGGAAGTCTTCTGATGGTAAATGGGTACATGCCTTTTGTGCCGAGTGGATCTTCGAGTCAACATTCAGAAGGGGTCAAGTATCTCCCATTGAGGGAATGGAGACGATTTCTAAGGCGCTTGATTTTTGTTATATCTGCCGACGCAAATGTGGTGTCTGCATAAAATGTAACTTTGGCAATTGTCAGTCAACATTTCATCCTTCCTGTGCTAGAAGCTCTGGCTTTTACATGAATGTGAAACCTTTCGGTGGAAAGATCGAACACAAGGCATACTGTGAAAAGCATAGTGTTGAGCAGAGGACGAAGGCTGAAACACAAATACATGGAACTGAGGAGTTAGAGAACCTCAGGAAAATCAGAGTTGAACTGGAGAGGGTACGACTACTTTGTGACAGAATCATCAAACGAGAAAAAGTAAAGCGGGAACTGCTCATTTGTTCACATGATCTTCTTGCTGTGAGGAGAGATCATGTTGCTCGGACAGTGCTTGTTACTAGTCCTTTCCTGCAACCTGATGTTAGTTCTGATTCAGCTACAACATCTCTTAATGGACATACAGATGATTACAAATCATGCAGTGATGCAATTCAAAGATCAGATGATGTGACTGTGGATAGTACAATTCCTGTGAAGCGGCTGAGAGTTCCTATAACTATTGACAATGACCCAAAAACAGATGATAACAGCTCCTCATCCCAAAACCATTCTACCAAAAAGCTCTCGGAGAGGCCACAAGTTTCTGAAAAACATATTCCTTGTGGAGCTTCTAGTGCTGCAACTTGTAATCTTTCGGAAGATGGAGGATGGAGGTCAAAATCTAGGAAGCATGCTGAGACATTTGAGAAAGAACTGGTAATGACATCTGATCAAGCATCGATGAAAAATATGAAATTACCCAAAGGATATGCATATGTTCCTGCTGATTGCATTCCAAATGAAAAGCAGATCAACCAGGATGCTTGTTCTGGTGAACAACCGCAAGGAGACGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

364

Amino Acids

40.54

Weight (kDa)

8.35

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	520, 733, 1076
AclWI	GGATC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	126, 477, 718
AfiI	CCNNNNNNNGG	2 cut(s)	191, 347
AgsI	TTSAA	2 cut(s)	464, 689
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	1050
AluBI	AGCT	5 cut(s)	315, 632, 786, 817, 863
AluI	AGCT	5 cut(s)	315, 632, 786, 817, 863
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	194, 926, 1077
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	1 cut(s)	872
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	1079
AxyI	CCTNAGG	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	3 cut(s)	107, 890, 897
BciT130I	CCWGG	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	3 cut(s)	194, 926, 1077
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	4 cut(s)	309, 594, 867, 918
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	734, 873
BlsI	GCNGC	2 cut(s)	735, 874
Bme1390I	CCNGG	1 cut(s)	1052
BmrFI	CCNGG	1 cut(s)	1052
BmsI	GCATC	3 cut(s)	670, 980, 1045
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	974
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 347
Bse1I	ACTGG	2 cut(s)	471, 954
Bse21I	CCTNAGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	1052
BseCI	ATCGAT	1 cut(s)	974
BseGI	GGATG	4 cut(s)	295, 791, 908, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	191, 347
BseMII	CTCAG	4 cut(s)	420, 460, 728, 921
BseNI	ACTGG	2 cut(s)	471, 954
BseRI	GAGGAG	3 cut(s)	446, 574, 778
BseXI	GCAGC	1 cut(s)	859
BshFI	GGCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	974
BsiHKAI	GWGCWC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	191, 347
BsmAI	GTCTC	3 cut(s)	194, 926, 1077
BsmBI	CGTCTC	2 cut(s)	194, 1077
BsmI	GAATGC	1 cut(s)	1026
BsnI	GGCC	1 cut(s)	829
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
BspACI	CCGC	3 cut(s)	520, 733, 1076
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	4 cut(s)	421, 459, 729, 922
BspDI	ATCGAT	1 cut(s)	974
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	471, 954
BssMI	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	3 cut(s)	374, 583, 709
BstC8I	GCNNGC	1 cut(s)	927
BstDEI	CTNAG	5 cut(s)	210, 429, 446, 737, 930
BstF5I	GGATG	4 cut(s)	295, 791, 908, 1060
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	8 cut(s)	52, 150, 357, 547, 568, 695, 967, 1047
BstMAI	GTCTC	3 cut(s)	194, 926, 1077
BstMBI	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 526, 869
BstNI	CCWGG	1 cut(s)	1052
BstNSI	RCATGY	2 cut(s)	131, 929
BstSCI	CCNGG	1 cut(s)	1050
BstV1I	GCAGC	1 cut(s)	859
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	974
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	829
BsuTUI	ATCGAT	1 cut(s)	974
BtsCI	GGATG	4 cut(s)	295, 791, 908, 1060
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	2 cut(s)	588, 682
Cac8I	GCNNGC	1 cut(s)	927
CfoI	GCGC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	974
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	125, 476, 717
CviAII	CATG	7 cut(s)	128, 328, 422, 542, 569, 672, 926
CviJI	RGCY	9 cut(s)	315, 321, 407, 632, 736, 786, 817, 829, 863
CviKI_1	RGCY	9 cut(s)	315, 321, 407, 632, 736, 786, 817, 829, 863
CviQI	GTAC	3 cut(s)	125, 476, 717
DdeI	CTNAG	5 cut(s)	210, 429, 446, 737, 930
DpnI	GATC	8 cut(s)	51, 149, 356, 546, 567, 694, 966, 1046
DpnII	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
Eco81I	CCTNAGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	1050
EcoT22I	ATGCAT	1 cut(s)	1009
Esp3I	CGTCTC	2 cut(s)	194, 1077
FaeI	CATG	7 cut(s)	131, 331, 425, 545, 572, 675, 929
FatI	CATG	7 cut(s)	127, 327, 421, 541, 568, 671, 925
FauI	CCCGC	1 cut(s)	513
FauNDI	CATATG	1 cut(s)	1009
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	734, 873
FokI	GGATG	4 cut(s)	282, 778, 915, 1067
Fsp4HI	GCNGC	2 cut(s)	734, 873
FspBI	CTAG	4 cut(s)	309, 594, 867, 918
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	734, 873
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	829
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	7 cut(s)	131, 331, 425, 545, 572, 675, 929
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	159, 288
HindII	GTYRAC	2 cut(s)	159, 288
HinfI	GANTC	3 cut(s)	155, 495, 626
HphI	GGTGA	1 cut(s)	1079
Hpy166II	GTNNAC	4 cut(s)	159, 288, 539, 1070
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	4 cut(s)	159, 288, 539, 1070
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	162, 309, 397
HpyCH4III	ACNGT	3 cut(s)	374, 583, 709
HpyCH4V	TGCA	9 cut(s)	62, 95, 258, 607, 675, 683, 875, 1007, 1026
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 526, 869
HpyF3I	CTNAG	5 cut(s)	210, 429, 446, 737, 930
Hsp92II	CATG	7 cut(s)	131, 331, 425, 545, 572, 675, 929
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
LmnI	GCTCC	3 cut(s)	31, 791, 860
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	3 cut(s)	670, 980, 1045
MaeI	CTAG	4 cut(s)	309, 594, 867, 918
MaeIII	GTNAC	4 cut(s)	266, 488, 589, 703
MalI	GATC	8 cut(s)	51, 149, 356, 546, 567, 694, 966, 1046
MboI	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
MboII	GAAGA	4 cut(s)	99, 142, 539, 905
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	5 cut(s)	34, 277, 684, 720, 989
MlyI	GAGTC	1 cut(s)	164
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	332, 657
MspR9I	CCNGG	1 cut(s)	1052
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	3 cut(s)	137, 526, 869
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
NlaIII	CATG	7 cut(s)	131, 331, 425, 545, 572, 675, 929
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	488, 703
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	2 cut(s)	131, 929
PaeI	GCATGC	1 cut(s)	929
PctI	GAATGC	1 cut(s)	1026
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	495, 626
PkrI	GCNGC	2 cut(s)	735, 874
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	1050
PspGI	CCWGG	1 cut(s)	1050
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	3 cut(s)	126, 477, 718
RsaNI	GTAC	3 cut(s)	125, 476, 717
RseI	CAYNNNNRTG	2 cut(s)	332, 657
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	734, 873
Sau3AI	GATC	8 cut(s)	49, 147, 354, 544, 565, 692, 964, 1044
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	1052
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	670, 980, 1045
SmiMI	CAYNNNNRTG	2 cut(s)	332, 657
SpeI	ACTAGT	1 cut(s)	593
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	5 cut(s)	34, 277, 684, 720, 989
SsiI	CCGC	3 cut(s)	520, 733, 1076
SspMI	CTAG	4 cut(s)	309, 594, 867, 918
StyD4I	CCNGG	1 cut(s)	1050
TaaI	ACNGT	3 cut(s)	374, 583, 709
TaqI	TCGA	3 cut(s)	153, 357, 974
TasI	AATT	5 cut(s)	34, 277, 684, 720, 989
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	2 cut(s)	495, 626
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	588, 682
TseFI	GTSAC	2 cut(s)	488, 703
TseI	GCWGC	1 cut(s)	872
Tsp45I	GTSAC	2 cut(s)	488, 703
TspDTI	ATGAA	5 cut(s)	284, 344, 992, 1001, 1050
TspRI	CASTG	2 cut(s)	588, 682
XceI	RCATGY	2 cut(s)	131, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	4 cut(s)	309, 594, 867, 918
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.